mRNA_Ecto-sp13_S_contig6512.17313.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6512.17313.1
Unique NamemRNA_Ecto-sp13_S_contig6512.17313.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6512.17313.1 vs. uniprot
Match: A0A6H5L089_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L089_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 1.370e-82
Identity = 141/214 (65.89%), Postives = 145/214 (67.76%), Query Frame = 1 
Query:  370 RGSPCLVEAIVKADGVGSMTMRHLAAKIFAEEVGCDWLIPSQWGMPAAGGGSGASVYCHSAATYEEQRRGFGNATKDEAESMVHRCSVVNWPEYFNLNTSSVEPPTNCAFRVVEA-------------------------------------------------------------DTSSNHDLEMALKEIDANGFDNIEWDRLKIVLRQPHAS 828
            +GSPCLV+A+VKADGVGSMTMRHLAAKIFAEEVGCDWL PSQWGMPAAG GSGASVYCHSAATYEEQRRGFGNATK EAESMVHRCSVVNWPEYFNLN SSVEPP NCA RVVE                                                              DTSSNHDLEMALKEIDANGFDN+ WDRLKIVLRQPHAS
Sbjct:   15 QGSPCLVDAVVKADGVGSMTMRHLAAKIFAEEVGCDWLTPSQWGMPAAGDGSGASVYCHSAATYEEQRRGFGNATKAEAESMVHRCSVVNWPEYFNLNASSVEPPANCALRVVEGQHGSGEGGSFSAAPIFEVARRRLGTRQYHSGFNQNRSSFYPNNVHENAMLAGLCAYFVVKVDTSSNHDLEMALKEIDANGFDNLGWDRLKIVLRQPHAS 228
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BLAST of mRNA_Ecto-sp13_S_contig6512.17313.1 vs. uniprot
Match: D7FRT1_ECTSI (Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT1_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 8.320e-75
Identity = 122/135 (90.37%), Postives = 124/135 (91.85%), Query Frame = 1 
Query:  424 MTMRHLAAKIFAEEVGCDWLIPSQWGMPAAGGGSGASVYCHSAATYEEQRRGFGNATKDEAESMVHRCSVVNWPEYFNLNTSSVEPPTNCAFRVVEADTSSNHDLEMALKEIDANGFDNIEWDRLKIVLRQPHAS 828
            MTMRHLAAKIFAEEVGCDWL PSQWGMP AG GSGASVYCHSAATY+EQRRGFGNATKDEAE MVHRCSVVNWPEYFNLN SSVE P NC FRVVEADTS NHDLEMALKE DANGFDN+ WDRLKIVLRQPHAS
Sbjct:    1 MTMRHLAAKIFAEEVGCDWLTPSQWGMPVAGDGSGASVYCHSAATYDEQRRGFGNATKDEAEIMVHRCSVVNWPEYFNLNASSVELPANCTFRVVEADTSRNHDLEMALKETDANGFDNLGWDRLKIVLRQPHAS 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6512.17313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L089_9PHAE1.370e-8265.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FRT1_ECTSI8.320e-7590.37Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6512contigEcto-sp13_S_contig6512:3021..4559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score258.8
Seed ortholog evalue2.8e-66
Seed eggNOG ortholog2880.D7FRT1
Model size829
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0318@1,KOG3628@2759
Ec32 ortholog descriptionAcyl carrier protein-like
Ec32 orthologEc-25_000270.2
Cds size828
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.3025064-CDS-Ecto-sp13_S_contig6512:3020..31371681463898.3025064-CDS-Ecto-sp13_S_contig6512:3020..3137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6512 3021..3137 -
1681463898.31533-CDS-Ecto-sp13_S_contig6512:3432..37701681463898.31533-CDS-Ecto-sp13_S_contig6512:3432..3770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6512 3433..3770 -
1681463898.326558-CDS-Ecto-sp13_S_contig6512:4186..45591681463898.326558-CDS-Ecto-sp13_S_contig6512:4186..4559Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6512 4187..4559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6512.17313.1prot_Ecto-sp13_S_contig6512.17313.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6512 3021..4559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6512.17313.1

>prot_Ecto-sp13_S_contig6512.17313.1 ID=prot_Ecto-sp13_S_contig6512.17313.1|Name=mRNA_Ecto-sp13_S_contig6512.17313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=276bp
TAHCLLQVTPCLPRVTSTATAAIAIEVKAEQQKRTLVPPQACQEFSHQQA
IAASDNDNVKNRSTRAAPVPLPSSPSPSSLDSYWSASDCMDVWASWTATL
PASLQPSYANRELLKERAADMRARGSPCLVEAIVKADGVGSMTMRHLAAK
IFAEEVGCDWLIPSQWGMPAAGGGSGASVYCHSAATYEEQRRGFGNATKD
EAESMVHRCSVVNWPEYFNLNTSSVEPPTNCAFRVVEADTSSNHDLEMAL
KEIDANGFDNIEWDRLKIVLRQPHAS
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mRNA from alignment at Ecto-sp13_S_contig6512:3021..4559-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6512.17313.1 ID=mRNA_Ecto-sp13_S_contig6512.17313.1|Name=mRNA_Ecto-sp13_S_contig6512.17313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1539bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6512:3021..4559- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGCCCATTGTCTTCTCCAGGTAACGCCATGCCTGCCGCGGGTGACATC
AACAGCAACTGCAGCAATCGCTATCGAGGTCAAAGCTGAGCAGCAGAAGA
GAACGCTTGTCCCTCCCCAGGCGTGCCAGGAGTTCTCCCACCAGCAAGCT
ATCGCCGCATCAGATAACGACAATGTCAAGAATCGTAGTACTAGGGCGGC
ACCGGTTCCTCTACCTTCCTCGCCGTCGCCGTCGTCGTTGGACAGCTACT
GGTCGGCGTCCGACTGCATGGACGTTTGGGCGTCTTGGACGGCCACCTTG
CCCGCTTCGCTGCAGCCTTCCTACGCGAACCGAGAGCTCTTGAAAGAACG
CGCGGCGGACATGCGGGCACGAGGTGTGCGGGTATAAGATAGTAGCACCA
TGGATATGGACGGGAAAAACAGAACTAGAAACTAGAAGACCTGGTTTTCG
GCGGAGATGTAGTAGGTAGTTGCCCTGCACGGGCAGAGAGCCCCCAGTGG
TGTTCTGTCGGAAGGGCCTCTGAGTGTGATGGAATCGTTCGTTCAAGATC
TTCAGAAAATCGGGAATCCACCCCGGTCCAACTGCTGTTTCGACTTGAGC
CTGCTCCGAGGATAGAGTAGTAGAGACCTCGCCCCAAACGCTGGGTCTCC
TGCTGGCTGAACTCCTTCCTTTGCCAGTCAAACTCAGTCCTCACGCCACT
AAAGGAGGCCGACGAGAACCAAAACCAGCAGCAGCAGTAATTATGCAAAG
CGTCTTTGTTCCCGCCCCCGCGTATTTTTTCATTGCAAGGGTCGCCGTGC
CTGGTGGAAGCGATAGTGAAGGCGGACGGAGTCGGGAGCATGACAATGCG
ACATCTTGCAGCAAAAATATTCGCGGAAGAGGTGGGGTGCGACTGGCTAA
TCCCGTCGCAGTGGGGGATGCCGGCAGCAGGAGGCGGGAGCGGGGCATCC
GTTTACTGCCATTCGGCAGCAACGTATGAGGAGCAGCGTAGGGGTTTCGG
AAACGCCACCAAAGATGAAGCGGAAAGCATGGTTCATCGATGCTCCGTGG
TGAACTGGCCGGAGTACTTTAATCTCAACACTTCTTCGGTGGAGCCGCCG
ACGAACTGCGCGTTTCGCGTAGTGGAGGTGAGGTGCGGTGTCTTCGACCA
CGGTTGGTTGCGTATATGGCGTGCGCGCTAGATACACGAGTGGGTGGCTC
TGAGACAGCCGAATGGCATACGTCGTCGGTAGATCAGGGACAGCATGGGT
CCGGAGACGGCGGCAGCTGCTCGGTCGCTCGGATTTTCGATAAGTTGCGA
GACGACGACTTGGAACACCCCAATACCACAGCTGTTTCAATCCAAACTGG
AGTTTCTTCTACCCAAACAACGTGCATCAAAACGCAATGCTTGCCGGATT
GTGCGCGTACTTTGTTACCAAGGCGGACACGTCCAGCAACCACGATCTCG
AGATGGCCCTCAAAGAGATCGATGCCAACGGCTTCGACAATATCGAATGG
GATCGACTAAAGATTGTGCTTCGACAGCCGCACGCCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6512:3021..4559-

>mRNA_Ecto-sp13_S_contig6512.17313.1 ID=mRNA_Ecto-sp13_S_contig6512.17313.1|Name=mRNA_Ecto-sp13_S_contig6512.17313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6512:3021..4559- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGCCCATTGTCTTCTCCAGGTAACGCCATGCCTGCCGCGGGTGACATC
AACAGCAACTGCAGCAATCGCTATCGAGGTCAAAGCTGAGCAGCAGAAGA
GAACGCTTGTCCCTCCCCAGGCGTGCCAGGAGTTCTCCCACCAGCAAGCT
ATCGCCGCATCAGATAACGACAATGTCAAGAATCGTAGTACTAGGGCGGC
ACCGGTTCCTCTACCTTCCTCGCCGTCGCCGTCGTCGTTGGACAGCTACT
GGTCGGCGTCCGACTGCATGGACGTTTGGGCGTCTTGGACGGCCACCTTG
CCCGCTTCGCTGCAGCCTTCCTACGCGAACCGAGAGCTCTTGAAAGAACG
CGCGGCGGACATGCGGGCACGAGGGTCGCCGTGCCTGGTGGAAGCGATAG
TGAAGGCGGACGGAGTCGGGAGCATGACAATGCGACATCTTGCAGCAAAA
ATATTCGCGGAAGAGGTGGGGTGCGACTGGCTAATCCCGTCGCAGTGGGG
GATGCCGGCAGCAGGAGGCGGGAGCGGGGCATCCGTTTACTGCCATTCGG
CAGCAACGTATGAGGAGCAGCGTAGGGGTTTCGGAAACGCCACCAAAGAT
GAAGCGGAAAGCATGGTTCATCGATGCTCCGTGGTGAACTGGCCGGAGTA
CTTTAATCTCAACACTTCTTCGGTGGAGCCGCCGACGAACTGCGCGTTTC
GCGTAGTGGAGGCGGACACGTCCAGCAACCACGATCTCGAGATGGCCCTC
AAAGAGATCGATGCCAACGGCTTCGACAATATCGAATGGGATCGACTAAA
GATTGTGCTTCGACAGCCGCACGCCAGC
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