mRNA_Ecto-sp13_S_contig64479.17215.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64479.17215.1
Unique NamemRNA_Ecto-sp13_S_contig64479.17215.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64479.17215.1 vs. uniprot
Match: A0A6H5K0G0_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.520e-29
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    1 QWGDEIFKHETVVRPDILLSIMAQGYKVLWTDVDIVWLGNPLPLLPDTHKNATA 162
            QWGDEIFKHETVVRPDILLSIMAQGYKVLWTDVDIVWLGNPLPLLPDT KN+TA
Sbjct: 1288 QWGDEIFKHETVVRPDILLSIMAQGYKVLWTDVDIVWLGNPLPLLPDTQKNSTA 1341
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BLAST of mRNA_Ecto-sp13_S_contig64479.17215.1 vs. uniprot
Match: D8LU02_ECTSI (Xylosyltransferase, family GT77 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU02_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 9.080e-16
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 QWGDEIFKHETVVRPDILLSIMAQGYKVLWTDVDIVWLGNPLPLLPDTHKNAT 159
            QWGD IFK +TV RPDILL I+ QGYK L+TDVDI WLGN L LLP++    T
Sbjct:  348 QWGDNIFKQQTVARPDILLPILRQGYKALYTDVDIFWLGNVLSLLPNSRVTQT 400
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BLAST of mRNA_Ecto-sp13_S_contig64479.17215.1 vs. uniprot
Match: A0A6P4CS42_ARADU (Glycosyltransferase n=8 Tax=Arachis TaxID=3817 RepID=A0A6P4CS42_ARADU)

HSP 1 Score: 47.8 bits (112), Expect = 8.960e-5
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 QWGDEIFKHETVVRPDILLSIMAQGYKVLWTDVDIVWLGNPLPLLPDTH 147
            ++G + F + T  RP  LL I+  GY V++ DVD+VWLG+PL  L   H
Sbjct:  156 KFGSKGFFNFTARRPSHLLKILELGYSVMYNDVDMVWLGDPLLQLEGNH 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64479.17215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K0G0_9PHAE9.520e-2996.30Nucleotid_trans domain-containing protein n=1 Tax=... [more]
D8LU02_ECTSI9.080e-1666.04Xylosyltransferase, family GT77 n=1 Tax=Ectocarpus... [more]
A0A6P4CS42_ARADU8.960e-544.90Glycosyltransferase n=8 Tax=Arachis TaxID=3817 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64479contigEcto-sp13_S_contig64479:6..176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score81.3
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog2880.D8LU02
Model size171
KEGG koko:K11714,ko:K20784
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009664,GO:0009832,GO:0009856,GO:0009987,GO:0010306,GO:0010383,GO:0010393,GO:0010396,GO:0012505,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0017144,GO:0019538,GO:0022414,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0035250,GO:0035252,GO:0036211,GO:0042285,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0045229,GO:0045488,GO:0045489,GO:0048856,GO:0048868,GO:0051704,GO:0052325,GO:0052546,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons1
EggNOG free text desc.rhamnogalacturonan II biosynthetic process
EggNOG OGs28KPY@1,2QT5X@2759
Cds size171
COG Functional cat.M
CAZyGT77
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463890.695233-CDS-Ecto-sp13_S_contig64479:5..1761681463890.695233-CDS-Ecto-sp13_S_contig64479:5..176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64479 6..176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64479.17215.1prot_Ecto-sp13_S_contig64479.17215.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64479 6..176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64479.17215.1

>prot_Ecto-sp13_S_contig64479.17215.1 ID=prot_Ecto-sp13_S_contig64479.17215.1|Name=mRNA_Ecto-sp13_S_contig64479.17215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
QWGDEIFKHETVVRPDILLSIMAQGYKVLWTDVDIVWLGNPLPLLPDTHK
NATAVS*
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mRNA from alignment at Ecto-sp13_S_contig64479:6..176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64479.17215.1 ID=mRNA_Ecto-sp13_S_contig64479.17215.1|Name=mRNA_Ecto-sp13_S_contig64479.17215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64479:6..176+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAATGGGGGGACGAGATCTTCAAGCACGAGACCGTGGTAAGGCCCGACAT
ACTCCTGTCCATCATGGCCCAGGGCTATAAGGTGCTCTGGACGGACGTCG
ATATCGTCTGGCTCGGGAACCCTTTGCCCCTCCTGCCGGACACTCATAAA
AATGCCACAGCGGTAAGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64479:6..176+

>mRNA_Ecto-sp13_S_contig64479.17215.1 ID=mRNA_Ecto-sp13_S_contig64479.17215.1|Name=mRNA_Ecto-sp13_S_contig64479.17215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64479:6..176+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAATGGGGGGACGAGATCTTCAAGCACGAGACCGTGGTAAGGCCCGACAT
ACTCCTGTCCATCATGGCCCAGGGCTATAAGGTGCTCTGGACGGACGTCG
ATATCGTCTGGCTCGGGAACCCTTTGCCCCTCCTGCCGGACACTCATAAA
AATGCCACAGCGGTAAGTTAA
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