mRNA_Ecto-sp13_S_contig6318.17059.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6318.17059.1
Unique NamemRNA_Ecto-sp13_S_contig6318.17059.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: A0A6H5JPV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV4_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 8.730e-105
Identity = 284/318 (89.31%), Postives = 286/318 (89.94%), Query Frame = 1
Query:  637 MPRADLLAEPSAAAAAGSPLTRGKATTTGAAPSP---SRLSXXXXXXXXXAGGSIGRAGSNRLLHGMATEAGIGGGSSSTDNSPRRPSVGRGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRTDGXXMXEGEEGRDGEAGAAATEDPKAARIEQLRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHSDDHAEEVKARAKVCSRSV 1581
            MPRADLLAEPSAAAAAGSPLTRGKAT           SRLS         AGGSIGRAGSNRLLHGMA EAGIGGGSSSTDNSPRRPS GRGV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RTDGXX XEGEEGRDG AGAAATEDPKAARIEQLRKLTK+CLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQF+CGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHSDDHA EVKARAKV    V
Sbjct:    1 MPRADLLAEPSAAAAAGSPLTRGKATAXXXXXXXXXXSRLSGGASSSRRRAGGSIGRAGSNRLLHGMAPEAGIGGGSSSTDNSPRRPSAGRGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RTDGXXXXEGEEGRDGNAGAAATEDPKAARIEQLRKLTKNCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHSDDHAVEVKARAKVARSGV 317          
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: D8LN33_ECTSI (Putative subunit of the Anaphase Promoting Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN33_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 3.700e-79
Identity = 229/257 (89.11%), Postives = 236/257 (91.83%), Query Frame = 1
Query:  826 MATEAGIGGGSSSTDNSPRRPSVGRGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----IGRTDGXXMXEGEEGRDGEAGAAATEDPKAARIEQLRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHSDDHAEEVKARAKVCSRSVS 1584
            MA EAGIGGGSSSTDNSPRRPS GR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    X    IGRTDG  M +GEEGRDG+AGAAATEDPKAARIEQLR+LTK+CLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQF+CGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGH+DDHAEEVKARAK     V+
Sbjct:    1 MAPEAGIGGGSSSTDNSPRRPSAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSHAXXXXXIGRTDGGGMGDGEEGRDGQAGAAATEDPKAARIEQLRELTKNCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHTDDHAEEVKARAKAARSGVA 257          
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: A0A383WBY8_TETOB (Uncharacterized protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WBY8_TETOB)

HSP 1 Score: 62.8 bits (151), Expect = 1.060e-6
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 1225 EQLRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLL 1506
            +QLR L +DC+ +++  TA +YADKLVT + +    V L+A+  F  G + R V LL  H L++      +R  +LAA+SL A +  +E ++LL
Sbjct:    6 DQLRSLVQDCIAKHLYSTAVFYADKLVTLTQYAPGDVYLVAQTYFVSGQHRRAVMLLKHHGLME-----DVRFRYLAAKSLAAVDDWDEVLALL 94          
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: A0A7J7PWQ9_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PWQ9_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 3.750e-5
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 1228 QLRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLL 1506
            QLR L +DC+ +++  TA +YADKLVT + +    V L+A+  F    + R V LL  H L++      +R  +LAA+ L   E+ +E ++LL
Sbjct:    5 QLRSLVQDCIAKHLYSTAVFYADKLVTLTQYAPGDVYLVAQTYFVSRQHRRAVMLLKHHGLME-----DVRFRYLAAKCLAEVEEWDECLTLL 92          
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: A0A061QQV3_9CHLO (Cell division n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QQV3_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 4.620e-5
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 1231 LRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLL 1506
            LR L +DC+E+++  +AA++ADKLVT SN++   V LLA+  F    + R + LL Q + ++    F     +LAAR L    + EE +S+L
Sbjct:   10 LRSLIQDCIEKHLYTSAAFFADKLVTLSNYEPGDVYLLAQTFFLGRNFRRALKLLNQSKTVERDARFR----YLAARCLFECSEWEECLSML 97          
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: A0A061RDF5_9CHLO (Anaphase-promoting complex subunit 6 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RDF5_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 6.630e-5
Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 1231 LRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLL 1506
            LR L +DC+E+++  +AA++ADKLVT SN++   V LLA+  F    + R + LL Q + ++    F     +LAAR L    + EE +S+L
Sbjct:   10 LRSLIQDCIEKHLYTSAAFFADKLVTLSNYEPGDVYLLAQTFFLGRNFRRALKLLNQSKTVERDARFR----YLAARCLFECSEWEECLSML 97          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JPV4_9PHAE8.730e-10589.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN33_ECTSI3.700e-7989.11Putative subunit of the Anaphase Promoting Complex... [more]
A0A383WBY8_TETOB1.060e-638.30Uncharacterized protein n=2 Tax=Tetradesmus obliqu... [more]
A0A7J7PWQ9_9CHLO3.750e-536.56Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A061QQV3_9CHLO4.620e-538.04Cell division n=1 Tax=Tetraselmis sp. GSL018 TaxID... [more]
A0A061RDF5_9CHLO6.630e-538.04Anaphase-promoting complex subunit 6 n=1 Tax=Tetra... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6318contigEcto-sp13_S_contig6318:3596..7860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score280.8
Seed ortholog evalue1.3e-72
Seed eggNOG ortholog2880.D8LN33
Model size1589
KEGG koko:K03353
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.cell division
EggNOG OGsKOG1173@1,KOG1173@2759
Cds size1587
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463876.1160414-CDS-Ecto-sp13_S_contig6318:3595..48201681463876.1160414-CDS-Ecto-sp13_S_contig6318:3595..4820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6318 3596..4820 +
1681463876.1777933-CDS-Ecto-sp13_S_contig6318:5886..60111681463876.1777933-CDS-Ecto-sp13_S_contig6318:5886..6011Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6318 5887..6011 +
1681463876.1894271-CDS-Ecto-sp13_S_contig6318:6674..67871681463876.1894271-CDS-Ecto-sp13_S_contig6318:6674..6787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6318 6675..6787 +
1681463876.1984427-CDS-Ecto-sp13_S_contig6318:7736..78601681463876.1984427-CDS-Ecto-sp13_S_contig6318:7736..7860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6318 7737..7860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6318.17059.1prot_Ecto-sp13_S_contig6318.17059.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6318 3596..7860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6318.17059.1

>prot_Ecto-sp13_S_contig6318.17059.1 ID=prot_Ecto-sp13_S_contig6318.17059.1|Name=mRNA_Ecto-sp13_S_contig6318.17059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=529bp
AAWFIFVLSSPSNAQQGIANNNNNNNNNNNEPNSARLRLKPPHPPPPLLP
SLFCRCRCQQQQQQQQHISFNHHHHHCCCCCCALPSLSKPRAPRAAAGGA
SAFHVVLWGGGPKSPTTSSHRDPRSGSGGGWAGRRRNSSSSSADGTAAAP
GLDDSYSSPPSQLPAKRKRVSSPSPEQQQEQVAVPDSCELPAAAEEERVG
EDLVVGGLPPARMPRADLLAEPSAAAAAGSPLTRGKATTTGAAPSPSRLS
GGASSSRRRAGGSIGRAGSNRLLHGMATEAGIGGGSSSTDNSPRRPSVGR
GVGGGVGNGSTAVGAAGRGGKGKGKARPRSVVVPSSTSASATANGGVATA
AAAAATSGNSGGGGGSRSHADGGGGIGRTDGGGMGEGEEGRDGEAGAAAT
EDPKAARIEQLRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAK
AQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVS
LLEKVLGHSDDHAEEVKARAKVCSRSVS*
back to top

mRNA from alignment at Ecto-sp13_S_contig6318:3596..7860+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6318.17059.1 ID=mRNA_Ecto-sp13_S_contig6318.17059.1|Name=mRNA_Ecto-sp13_S_contig6318.17059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6318:3596..7860+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCATGGTTCATCTTTGTCCTGTCTTCGCCGTCGAACGCACAGCAGGG AATCGCCAACAACAACAACAACAACAACAACAACAACAACGAACCCAACT CGGCACGACTACGTTTAAAACCGCCGCACCCACCTCCTCCTCTCCTCCCC TCTCTCTTCTGCCGCTGCCGCTGCCAGCAGCAGCAGCAGCAGCAGCAGCA TATTTCCTTCAACCACCACCACCACCACTGCTGCTGTTGCTGCTGTGCAT TGCCGTCCCTCTCGAAACCTCGCGCACCGCGTGCGGCGGCGGGGGGCGCG TCTGCCTTCCACGTCGTCCTTTGGGGCGGCGGGCCAAAATCTCCCACCAC GAGTTCGCACCGAGATCCGCGCTCCGGTTCCGGCGGCGGCTGGGCAGGAA GAAGAAGAAACTCCTCCTCCTCCTCGGCCGACGGCACTGCTGCTGCCCCG GGTCTTGACGACTCCTACTCCTCACCGCCCTCACAGCTGCCTGCCAAGCG CAAGCGCGTGTCCTCGCCCAGCCCGGAACAGCAGCAGGAGCAGGTGGCGG TGCCGGATAGCTGCGAGCTCCCAGCGGCAGCGGAGGAAGAAAGGGTCGGC GAGGACTTGGTTGTTGGGGGACTCCCTCCCGCCCGCATGCCAAGGGCGGA CCTGTTGGCGGAGCCCTCTGCTGCTGCTGCAGCAGGTTCGCCGTTAACGA GGGGAAAGGCCACGACAACGGGGGCTGCCCCTAGCCCCAGCCGCCTCAGC GGCGGCGCCAGCAGCAGCAGGCGGCGAGCGGGGGGATCGATAGGGCGAGC AGGAAGCAACAGGCTGTTGCATGGCATGGCCACAGAGGCCGGGATCGGCG GCGGAAGTAGCAGCACCGATAACTCTCCCAGGAGGCCCTCTGTCGGGAGG GGCGTGGGCGGTGGCGTGGGCAACGGCAGCACGGCCGTAGGCGCAGCCGG CAGGGGGGGGAAAGGGAAGGGTAAGGCCAGGCCAAGATCGGTCGTCGTCC CAAGTAGCACCTCTGCGAGCGCTACTGCCAACGGCGGCGTCGCCACTGCT GCAGCAGCTGCTGCTACCTCGGGGAACAGCGGCGGTGGTGGTGGCAGCAG GAGCCATGCCGACGGCGGAGGGGGAATTGGTAGGACGGATGGGGGGGGTA TGGGAGAGGGAGAGGAGGGAAGAGATGGGGAGGCAGGAGCAGCGGCGACT GAGGATCCGAAGGCTGCCCGCATAGGTATGTTTCAGCGCCTCGAAAGATC GTTGTATGCTACGCAGAGAGTAATGGTCGTACATGTGTACATGACCACGA GTTCGGGCTGTACCGTGTAGGTATTTAGTTTGGTCTACCATGCTGGAAGC ACGCGCTAGTTAGCCAAGGCGCGTTTTCATGGTGACGAAAGGCTTCGATT GACTGTTGCGGTTGTGCTGACCCCGGCGTTGTTGTAGGTGCTCGTGAGAC TGGTAGAGATGTCGGCCTTTCTCCGTGGGTGTCCCACGGTGAGGTGTCCC ACACACGCACGCAGCACAGGGCGCGAGGGCGACGTCATGTGTAAGTGTGC TGTTGTTCAGGCGGAACTCGTTTTATGAATGAACTCACCATGTTCAGCGT CCAGCCTGCCCCGTATGACTGTACTCTTGTCCAAAACTTGCCTGTTTTGT GAAGTGAGAATATTTTTGTGCTCTCGATCGACGCGCGAGGTGTGATAAAC GTACAGAAAGAAAATGTGCTAATAGGGTGATCGCGCGAACTATCCGACCA TCCGAGCATGGGAGCACACAAGTATATCCTAGGAGACGTGCGTCGGTTTT GGCACCCCCTTGGTTGTGGAGCATTCAAGCTGTGAAAGTTGGCCTTACGA AGGTGATTGTGCACTCACTCGCACCTTGACAGTGGGTGGACAAGGTGGGA GGCACGGTTCGCATGCGGTCGTTTGCTGCACGATGCGCGAGTACATGAAT GTATCAGCCGGCTGCCGGCCTGTGGTGATGCGAGACGATCTTGCTTCCCA ATTTTCATCTAGCCATTCCAGTTGTGATGCGCACACTCACAGGATTTAGC TTTGGTCGATATGAACACACATAAACATACGACAGGGTAGGCTCCCTCAT GGCTCCTCCTCAAGGGTCCCCAGGTCATGACCGCGAGGAGTGCTGCACAT GTTTAGCCGCACTGAGACTATTGGATTTTCATTGGTCTGCCGACTAGCAC GGCAGGTGCTTCCTTTTGTCGCGAATATATTCGCCCACGCCCACTCGAAC GCGCGCCTTTCGGTGGTGCCAAACGTCATGCTGCTGTGAAGAGCAACTGC GGAAGCTGACGAAGGACTGCCTGGAGGAGAACATGTCGGACACGGCCGCC TACTACGCGGACAAGCTGGTGACCTTCTCCAACTTCGATCGAGAAGCCGT GCTCCTTCTCGCTAAGGTGACCCCCCTCCTCCCCTTCTCGTGAACCGCTG TGCGGCTCGTTTCTATGGTGAAGACATGACGGTAGGTGTCAGAAGCGGGC GAGGCAATTTGTTATTTAACTTGGGGCCGAGTTTTGGTTGTGTTGACGAA AAGGGTGTGCTTCTTAGCAGCACACGTGGTGTTGGCCTGGCGTTTCTGAC GAACGGTGACTCGCTTTGCAGCGCGTTGGCGACGGTCGGTGCTTCCGTAG CTTCGTGTGACGCTTTCCTGTCCGTTCTTCACACGAAGAGACTTGCTCCA TATTGCCGAGGGGCTATTGGGTACACAACAGCACAAGAGTTGTCTTTCAT GGGTGTTGTCCTCCTAGCCAAGATGAACACCGCGAGAGGGTTGCTGGCTG CAACCAACCCCACATGCGTCGGGAAATCTGTAGCGGTATTTCTTGAACAA GTTGCCTTCGGCACAGGTTTGAAATGGAGGAAGAAGTGTTCTGCAACATA TTTGAAATGCACACGAGGTTGCAGCCAGCGACGCAAGTCACGCTTGACCC CATCATCAGGTCGAAGAACCTCTTTTTACGGACGAAGTGAGATCGGATTT GCTTGCGATACGTTTGCTACGCCCCCCTTCTTTGATTGACGCTCCCGCTG GGACGTGTGTTCTTCTCAAACGAAAAAAGGCGCAATTTTCTTGCGGGGCG TACCTCCGTACGGTGCACCTGCTGGCCCAGCACCGCCTGCTGGACTACGC GGACAATTTCGGCCTCAGGGCGTGCCACTTGGCTGCGAGAAGGTGCGAGG GGAGCTGCACCGTAAGCTGTCGCTTGGGAATAGTGGCGCTAGGTTGATTT GATTGTCCACGGGGAAGCGTCGGTGGAAATGCCGCGTGGGGGGAGAGGTT GTGTGGGGGGGGCAAGGTTGTTGACATCTCACCCCGTCTCGTGCAGTGCA TCCCTCTTCGGGTGCCACGGGAGGGTTGGTCCTGTGGCTACGAGTTCGAA GATGGCGTCGACAGGCGTGCGTCGTGAGCACGAGCGGATGTTGCGAGTAC GGTAGACCTTGTTCGGGATGGAAGAGGCAAGATCTGCGGGGGAGGCTGCA CCGAAGAGGCAGTCCGTATTGCACGACGCAGAAAGATACACTCACCAGCC TGCCGCTCTTCGGCCGGGCCTGCCTTGTTCGCCTTGGTAGGAAACCTTGG AGACCATTGCTCGAGGGCAGCCTAGTTGTCGGCAGCCCTTACATCTACTT CGCACCTACAGCAAGGACCGCTCGTTGGTTGGGACTAGACTGTTGTCTGT TGCTTGGAAGCAGTTGGTGTTGATGGACGGTTTTTCGTCGTCACTGTTTT GTCGGACGCCTTTGTTTGCCTCGCATCGTTTGTCCGCGCACCGACCGGCA AACCTAGCAATGGCTGCACGTGTCATCCTGTTACGCATACTCTGCAGCGG CGTCCTAAAGCGGTACCGTGCGATGCGTAAGCCGACATCCCCCCCCCTCC CCTCTTCCCCTGCAAGGCACGATGTGTTTGTTCCCTCGTCAAAAGCGGTC TCACAATCTTCAAACGCTGCACCTCGAAACCGAGACCCTCGGTTCTCAAG GAGGAGGGCTTTGCACCGCCGCAAAACCGGTTGGTTTGTAGCCGCTTTGT GCTGTACGTCGTCAACGTAATTTCCCACGAACTTTACTCGCCTCGCCGTG GGGGCGCCGCGATTTGTGGTTTTTCTGTGATGGTCCCCCAGTCTAAGGGC GGCAGAGAAGACAGAAGAGTCGGTGTCTCTGCTGGAGAAGGTTTTGGGTC ATAGCGACGACCACGCCGAGGAGGTGAAGGCCAGGGCTAAGGTGTGTAGT AGGTCCGTGTCTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6318:3596..7860+

>mRNA_Ecto-sp13_S_contig6318.17059.1 ID=mRNA_Ecto-sp13_S_contig6318.17059.1|Name=mRNA_Ecto-sp13_S_contig6318.17059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1587bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6318:3596..7860+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCATGGTTCATCTTTGTCCTGTCTTCGCCGTCGAACGCACAGCAGGG
AATCGCCAACAACAACAACAACAACAACAACAACAACAACGAACCCAACT
CGGCACGACTACGTTTAAAACCGCCGCACCCACCTCCTCCTCTCCTCCCC
TCTCTCTTCTGCCGCTGCCGCTGCCAGCAGCAGCAGCAGCAGCAGCAGCA
TATTTCCTTCAACCACCACCACCACCACTGCTGCTGTTGCTGCTGTGCAT
TGCCGTCCCTCTCGAAACCTCGCGCACCGCGTGCGGCGGCGGGGGGCGCG
TCTGCCTTCCACGTCGTCCTTTGGGGCGGCGGGCCAAAATCTCCCACCAC
GAGTTCGCACCGAGATCCGCGCTCCGGTTCCGGCGGCGGCTGGGCAGGAA
GAAGAAGAAACTCCTCCTCCTCCTCGGCCGACGGCACTGCTGCTGCCCCG
GGTCTTGACGACTCCTACTCCTCACCGCCCTCACAGCTGCCTGCCAAGCG
CAAGCGCGTGTCCTCGCCCAGCCCGGAACAGCAGCAGGAGCAGGTGGCGG
TGCCGGATAGCTGCGAGCTCCCAGCGGCAGCGGAGGAAGAAAGGGTCGGC
GAGGACTTGGTTGTTGGGGGACTCCCTCCCGCCCGCATGCCAAGGGCGGA
CCTGTTGGCGGAGCCCTCTGCTGCTGCTGCAGCAGGTTCGCCGTTAACGA
GGGGAAAGGCCACGACAACGGGGGCTGCCCCTAGCCCCAGCCGCCTCAGC
GGCGGCGCCAGCAGCAGCAGGCGGCGAGCGGGGGGATCGATAGGGCGAGC
AGGAAGCAACAGGCTGTTGCATGGCATGGCCACAGAGGCCGGGATCGGCG
GCGGAAGTAGCAGCACCGATAACTCTCCCAGGAGGCCCTCTGTCGGGAGG
GGCGTGGGCGGTGGCGTGGGCAACGGCAGCACGGCCGTAGGCGCAGCCGG
CAGGGGGGGGAAAGGGAAGGGTAAGGCCAGGCCAAGATCGGTCGTCGTCC
CAAGTAGCACCTCTGCGAGCGCTACTGCCAACGGCGGCGTCGCCACTGCT
GCAGCAGCTGCTGCTACCTCGGGGAACAGCGGCGGTGGTGGTGGCAGCAG
GAGCCATGCCGACGGCGGAGGGGGAATTGGTAGGACGGATGGGGGGGGTA
TGGGAGAGGGAGAGGAGGGAAGAGATGGGGAGGCAGGAGCAGCGGCGACT
GAGGATCCGAAGGCTGCCCGCATAGAGCAACTGCGGAAGCTGACGAAGGA
CTGCCTGGAGGAGAACATGTCGGACACGGCCGCCTACTACGCGGACAAGC
TGGTGACCTTCTCCAACTTCGATCGAGAAGCCGTGCTCCTTCTCGCTAAG
GCGCAATTTTCTTGCGGGGCGTACCTCCGTACGGTGCACCTGCTGGCCCA
GCACCGCCTGCTGGACTACGCGGACAATTTCGGCCTCAGGGCGTGCCACT
TGGCTGCGAGAAGTCTAAGGGCGGCAGAGAAGACAGAAGAGTCGGTGTCT
CTGCTGGAGAAGGTTTTGGGTCATAGCGACGACCACGCCGAGGAGGTGAA
GGCCAGGGCTAAGGTGTGTAGTAGGTCCGTGTCTTGA
back to top