mRNA_Ecto-sp13_S_contig6306.17051.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6306.17051.1
Unique NamemRNA_Ecto-sp13_S_contig6306.17051.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6306.17051.1 vs. uniprot
Match: D7FJ24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ24_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 1.330e-147
Identity = 248/295 (84.07%), Postives = 257/295 (87.12%), Query Frame = 1 
Query:    1 MVERSAHDMGLADLRELMLDLAAASLDEEVNGSCETETCRALVAVVDAIPSREYGDAFSSLVAGLCDPSARGLEARMTTFTWPLLARNVPFKRSSSSSPHGSRGEGVVIGXXXXXXXXXATEAADGVGITIAAAAANSAVVPSLSHEVCHRLLKERFLKDTSYVDAKESPEGLGRALKALDVLLENEDDVLESETQEGYKRQYVVVALANEMAAGSMAVSRTAKPDGNECRKMVRLLEGINRELTSVMQNSVQMSKTLLDLMKSKYTPFLPASSGVQSKLSFGGKTVTSFVGENS 885
            MVERSAHDMGLADLRELMLDLAAASLDEEVNGSCETETCRALVAVVDA+P+REYGDAFSSLVAGLCDPSARGLE+R+TTFTWPLLARNVPFKRSS               XXXXXXXXX                    VVPSLSHEVCHRLLKERFLKDTSY DA+ESP+GLGRALKALDVLLENEDDVLESETQEGYKRQYVVVALANEMAAGSMAVSRTAKPDG+EC+KMVRLLE INRELTSVMQNSVQMSKTLLDLMKSKYTPFLPASSGVQSKLSFGGKTVTSF GE+S
Sbjct:    1 MVERSAHDMGLADLRELMLDLAAASLDEEVNGSCETETCRALVAVVDAMPAREYGDAFSSLVAGLCDPSARGLESRVTTFTWPLLARNVPFKRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPSLSHEVCHRLLKERFLKDTSYADAEESPQGLGRALKALDVLLENEDDVLESETQEGYKRQYVVVALANEMAAGSMAVSRTAKPDGDECKKMVRLLEAINRELTSVMQNSVQMSKTLLDLMKSKYTPFLPASSGVQSKLSFGGKTVTSFGGEDS 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6306.17051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ24_ECTSI1.330e-14784.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6306contigEcto-sp13_S_contig6306:1382..6733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2173
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_004660.1
Cds size951
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6306.17051.1prot_Ecto-sp13_S_contig6306.17051.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6306 2604..6733 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463875.597236-UTR-Ecto-sp13_S_contig6306:1381..26031681463875.597236-UTR-Ecto-sp13_S_contig6306:1381..2603Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6306 1382..2603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463875.609242-CDS-Ecto-sp13_S_contig6306:2603..27921681463875.609242-CDS-Ecto-sp13_S_contig6306:2603..2792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6306 2604..2792 -
1681463875.6204612-CDS-Ecto-sp13_S_contig6306:3787..39731681463875.6204612-CDS-Ecto-sp13_S_contig6306:3787..3973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6306 3788..3973 -
1681463875.6319556-CDS-Ecto-sp13_S_contig6306:4849..52171681463875.6319556-CDS-Ecto-sp13_S_contig6306:4849..5217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6306 4850..5217 -
1681463875.6431336-CDS-Ecto-sp13_S_contig6306:5868..59861681463875.6431336-CDS-Ecto-sp13_S_contig6306:5868..5986Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6306 5869..5986 -
1681463875.6543584-CDS-Ecto-sp13_S_contig6306:6643..67331681463875.6543584-CDS-Ecto-sp13_S_contig6306:6643..6733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6306 6644..6733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6306.17051.1

>prot_Ecto-sp13_S_contig6306.17051.1 ID=prot_Ecto-sp13_S_contig6306.17051.1|Name=mRNA_Ecto-sp13_S_contig6306.17051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=317bp
MVERSAHDMGLADLRELMLDLAAASLDEEVNGSCETETCRALVAVVDAIP
SREYGDAFSSLVAGLCDPSARGLEARMTTFTWPLLARNVPFKRSSSSSPH
GSRGEGVVIGGGEGGNNNNATEAADGVGITIAAAAANSAVVPSLSHEVCH
RLLKERFLKDTSYVDAKESPEGLGRALKALDVLLENEDDVLESETQEGYK
RQYVVVALANEMAAGSMAVSRTAKPDGNECRKMVRLLEGINRELTSVMQN
SVQMSKTLLDLMKSKYTPFLPASSGVQSKLSFGGKTVTSFVGENSSDDDD
DDDDDDEEEEDETESQ*
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mRNA from alignment at Ecto-sp13_S_contig6306:1382..6733-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6306.17051.1 ID=mRNA_Ecto-sp13_S_contig6306.17051.1|Name=mRNA_Ecto-sp13_S_contig6306.17051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5352bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6306:1382..6733- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGAACGAAGTGCCCACGATATGGGCCTTGCCGATCTCCGAGAACT
AATGCTGGACCTCGCTGCCGCATCGCTAGACGAGGAGGTGGTGAGTCGAT
TCGGGTCGAGACGAACCGACACAAGTCCGGGTGGCGAGTGCGTTGGCTAT
GTCATCTCTCTGCTATTTTTCTCGCCTCAGCATCGCATGTCACGATTCCA
TATCCTAGCATACCACCACGGCACGCTCCCTCACTCAATCTTTCACTCAC
CACGCACCATGCGGTGCTTGCGTGTACCGCTCCGCTCCAAGAGGTGGTGC
AATTTGTAGCAATAGGCTGCGTGTATGCATCACGTGTACTGGCGTTTCTT
AGGCCATGCCTGGATCAAACGCGCGGTAATGTCCCCACTTTGTTGGGCGA
TTCATACAACCAAATTCAAGATGCACTGCAACATACCATACCGTGCTGCA
GTATTTAAAGTATACGTCAAAGATTAGCTCGCTTCTGAACAGCCCCTTTC
GGATACAGCAGAATATTGCGCATCGGGTCCATGTTGTTCGAGTTTGGTTG
TGCCGTATTATAGTGGTGGTGTTGACACGACAACTAACGACAAACATGCC
CCTTTGTATGCCAAATAAGAACTTAAATAGTATGCTGCCGCTCCCATTAT
GCGTAACGAGGTTTCTTATTCGAAAGAACCTCAAAAATACTTCTAAAAGA
CAGTGAGAAACTAAAAGGGGCGCGATTGATGGTATTTGTACGAACAGAAC
GGGTCCTGCGAGACCGAGACGTGTCGAGCCTTGGTGGCCGTCGTGGATGC
CATACCGTCTCGAGAGTACGGAGACGCCTTCTCCTCGCTGGTGGCCGGCT
TGTGCGACCCCTCCGGTGAGCGGATTTGGAGATCGAGTTCTTGTATGCGC
TTTTCCCGCTGACTTGTTTGTGTGAAAAATGGTGCTAATTATCCGTGTTT
ATAGATTCGCAGGAAGCAAAGTGAAAAGATAGGTCGTCATGATTTTTTTT
GTGTTGACTGTAAGGGATTGGACCTTACGCCTGTGAAGATCGCTTGCAAG
GTGGTCGTGTAGAGCTTCGTACCCGATTTAGGTTGTGTCGTGTTTTCGGA
GGTTGTTCTGGCGTGGATGTGGCAACACGTCGAGATCGACATAGCTACAC
AAGTGACGTATGCATAGCAGTAGCTCTGGTTAGCAACAACACAAGACCAA
ACTCGCTCTAGGCTCGAAGGCTTCAAGCCCTCGATTCGGCAACCGCTTCG
CTGCTGGCGTCCGATTACCGTCACCGATCTCCCTACCGCCTGCCATGTCA
AGGAATTTCTTTGCCCTCGTTTTTTTTGTCCTGGCCAACGACAAACAAGC
CACCTCCCGTTCCATCCACCTCTCCATCCATACTGTAAATATCACCACCG
CTGCCACTCCTGTCTGCCTTTCCTGTGTTTTATTCGTTTTTTTTGTTATT
CCGTAAGGCCTTGTCTCTCTCGCCGTGTGGTGTTTCCTCAACTGCCTTGT
CTCGTTTCGTGTTTAGCGCGTGGACTAGAAGCTCGGATGACGACTTTCAC
GTGGCCGCTCCTCGCGAGGAACGTCCCGTTCAAGCGATCCTCCTCCTCTT
CGCCTCACGGCTCGAGAGGCGAGGGTGTTGTCATCGGGGGTGGGGAGGGG
GGAAACAATAACAACGCCACCGAAGCGGCCGATGGCGTCGGCATCACCAT
TGCTGCGGCAGCTGCGAATTCGGCGGTGGTGCCATCGCTGAGCCACGAGG
TCTGTCACCGGCTGCTGAAGGAGCGTTTCCTGAAGGACACGTCGTACGTG
GACGCGAAGGAATCGCCGGAAGGGCTCGGGCGTGCCCTCAAGGCGCTGGA
CGTGCTGCTGGAAAACGAGGACGACGTGCTCGAGGTGATTGGTTGCCTTC
GTGCTTTGTGCCGGTTTTTGTTGTTCTTGTTGTCGATGCTTGGTTCGTCG
TTGCCGCCGTTGTTGCTTGTGCCTTCTACTAGGACTGTTGTTGTTGTAGG
TTTATTTGGGTGCAATTATTTGCAGAGAGTAGGTGGCAAAAAAGGATATA
GACTTGGAGCGGATGGACCGGCTGAATTTAGAACTCGTCTTGGACAGCGC
GTACGGAAAGCCCATCTCGAGAAACTTGTCTGTGCCAACTCGTTTTCTTT
CATGAAAATCCGCACGTGCGCGCGTTGTGCTCTTGTAGACACCACCACGT
TGCACATCACGCCTGTGCTGCAAAATGGGGGGGCTGTGTTTTTTTTGGCA
TCCCTGACTCGTAGTTTCCAACGCGTGAGGGCAACTATGTGGGTGTGGAT
GTTTTAAGGTGACCTAAGTGCCGTCAGCGGTTGCTTCGACCGTGTGCAAT
GTGTAAAAGGTACACGACGAACCAAGCAGGCACAATGCGGGCCAATCCCG
GCCCCCCCGTTTGTTCAGTGGACATACCTTGGTGAAACATCGATCGCTGT
TGTTGGATGCAAGTGGTGGAATAAAACCGTACCTGGTGGTAAGGAAGGGG
GGCGGGAACGAACAAGAACTCATAACGAGAAACACTGGAAAACACACAAA
GTGAGCGCCCCAGTGTCTGCGGTGAAGAACAGAAGTGTAGTGACCGTCAG
TGTCCGTTCTCGGGAAGAGAGACGAGAGGCGTGTTTAGTAGTGCAGCGGG
TATTGAAGCAACGAAAAAACACAGGTGCGCACACGCTGCCTCTACGAAGT
GGAAAAATCAAACGCGTGAACCCTAATCGCATGAACCCCCCCGTCCCTCC
CTATCCCAAGTCTGAGACCCAGGAGGGCTACAAGCGGCAGTACGTTGTCG
TGGCCCTCGCCAACGAGATGGCGGCGGGATCGATGGCGGTGTCTCGGACC
GCCAAGCCTGATGGGAACGAGTGCAGGAAGATGGTCCGATTGTTGGAGGG
CATCAATAGGGAGCTTACCAGCGTCATGCAGAACAGCGTCCAGATGGTGA
GCGGGTACGGGGCGATCGCCGCCGCGCGGTCGGTCGGTCGGTCGGTCGAT
CGGTCGCACACGGCGGGGAGGGGCATGCACTCTTGACTTGTCTTCCCAAA
ATCCAAACAAAAACCCACAATTAAAAGTAAATACTAATTGTGTACCACAG
CGTTTCCCAAGCAACCTCGAAAATAAACTCAATGATCTATTTTTTGTGTT
TTTTCTGCCCTCCGCCGGCGGGCTGGGTAGAAAAAGAAAAAAACTTCCCC
AAATCACACATTAGCTAAGATCGCACTCACACTTCTCTGTGAAGTGCAGT
CTATTGGATTTAAATGTTTGCACGATAGTTTTCGGTTTAAAAAAACTCCC
CTTTGCGTCTCCCAGATTCGTTGTACCCGCGGGAATAGATTTTGAGGGTG
GAAAGCTACATGGCACGACGCTTTTAGCCGTTCCTAGACGAACGTGGCGG
GACCAACCAATCCTTGGGGAAGTTCATGATTATCCACGATACGCATCGTA
TGGGATTTCGAGATGATAATGTGCGTTTCAACTCAGTTTGGCCGGAGCTG
CCCCGGAATCATCAAGCGGGTGCACATCGTCCACTTCTCTACCTCTCTGC
AAGTCATTCCCGAATATATGTGGGTCCTTGAGCGGGCTCATGAAATATTA
ACGATCAAAGTACATATGAGTTTGGTTTGTTTCGTGTAACGGAAAGCATG
TCATCCGACAGACCCCCCGCCGAAGCGTTGGTTCGTTTGTCGTTTGGTTT
TACCGTCGTGTGGTCGTCTCTACCCAGCCCCAACACCCTGTGTCTCTGCT
ATCCTGGCTCACGACACTGATTTCGACTTGACTCGTGATACGACACGAAG
TACGTCACATGGCCCGGTCTTTTCGTCCGCCCCCGGCCCCGGCCCCGGCC
CCGGCCCGACGAAACCTCATCTGATCTCAGCTTGTCGCCCCGAATGGATT
CCGATTCGCCCGTTCACCCCCCCCCCTTCCTATCCACGCAGAGCAAAACC
CTTCTGGACTTGATGAAGAGCAAGTACACTCCGTTCCTGCCCGCTTCGTC
CGGGGTGCAGAGCAAGCTGTCCTTCGGCGGCAAGACTGTCACCTCCTTCG
TGGGGGAGAACTCTAGCGACGATGACGACGACGATGATGATGATGATGAG
GAGGAGGAGGACGAAACCGAGTCTCAGTGATGCTTATTGCATGTGGTGCG
TTTTTCGCAATCAGCGCGGGCGTTGTCATCGACAGTATATAGCATGTTCT
TCAGCACCAGAAGCCATTCGAAAAAGGAAAGCTTGAGACGGAACCGGGGG
GACTGAGTTGCGTGTTAGGTCTATGTTGTGACCTCAATGTGGTCAATCAA
GCTTCCAGGAGGGTGTGGCGCTTTTCGTTGCGTCGTGTATTTCTCTCTCC
GCGACTGTACAGCAGTTACCACGAGGGTGCGTCTTAAAGAGTTGTTTTTA
TCTTCTGTTGGAAATGACGACGCTGGATTTGCGCTACACTCTATGAATGT
AACTCGTGTTGTCTTTGAGTGGTTTGTAGCGAAATGGTATACATACGGTG
AAGAAGCAGTTATGCCTCGCTTGAAGGACACCAACATGAAGGAAATCCCC
CGGTTAAGGGCATTTTTTTTCACGGACATGGGGGCTTGGAGAACGTACGA
CATAAGGAGGGGTATCAACCTTAGGGACACTTCCCCGGCTTAAGGACACA
TTTTTAGCAAAAAAACAGGTGTGTCCGTAACCAAGGTTCGACCGTGTTGT
AGAGTGTACTGGAAGGATTATGTTTCGAGTTGTGGCACAACCAACAACGT
ATTTCTTGTTGCCCACGAAATGTTTGTTCTGCCTTTGGGTATTTTTTTCT
CGCCGTCGCTGGTGCCATGCAGCAGATTCTCCTGACATTTTTCCCAGACA
ATGTGGGACGTGTCGAACTTGTCTCGGTAAGCTCATGGGCACTATGACGG
TAGGACTTCGTACACCAAGCACGGAGCTAGTTATCATTTGTTGGCTGTTG
GAGCCGGCCTAGGTAGGTGTCAATGCCGCGCGTTGATCGCGGACAGCGAT
CAGTCTGTTTAACAAAACAGTAGACGACACCTTCGATCCATGTTCAGAGG
AAGGAGCCTGATTGCTTACCAGACACGAGCATAGTTTTAAAGGACGGAGG
AGTGAATGGAGATGTTTCCGGAGAAGAATCAAGTGTCCCATTTACAGGCG
ATTGTCGGGTTTTTCTCTTGTGTGCGTCAGCGGCGCCCTTGGTGTGGTGA
TGATGATGATGTAGCCTCTCTCGGCTGTGTCTCGGTGGCAAAATGTTGAG
CGGTAAATTTCCGCGAGCACCATGATTCTTGCCGCTGAAACCTTTACTAG
ACTGCATAATAGTAAGCCTTGCATTGGTTAGACTACGGCCTCCTTTTTCC
GC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6306:1382..6733-

>mRNA_Ecto-sp13_S_contig6306.17051.1 ID=mRNA_Ecto-sp13_S_contig6306.17051.1|Name=mRNA_Ecto-sp13_S_contig6306.17051.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=951bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6306:1382..6733- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGAACGAAGTGCCCACGATATGGGCCTTGCCGATCTCCGAGAACT
AATGCTGGACCTCGCTGCCGCATCGCTAGACGAGGAGGTGAACGGGTCCT
GCGAGACCGAGACGTGTCGAGCCTTGGTGGCCGTCGTGGATGCCATACCG
TCTCGAGAGTACGGAGACGCCTTCTCCTCGCTGGTGGCCGGCTTGTGCGA
CCCCTCCGCGCGTGGACTAGAAGCTCGGATGACGACTTTCACGTGGCCGC
TCCTCGCGAGGAACGTCCCGTTCAAGCGATCCTCCTCCTCTTCGCCTCAC
GGCTCGAGAGGCGAGGGTGTTGTCATCGGGGGTGGGGAGGGGGGAAACAA
TAACAACGCCACCGAAGCGGCCGATGGCGTCGGCATCACCATTGCTGCGG
CAGCTGCGAATTCGGCGGTGGTGCCATCGCTGAGCCACGAGGTCTGTCAC
CGGCTGCTGAAGGAGCGTTTCCTGAAGGACACGTCGTACGTGGACGCGAA
GGAATCGCCGGAAGGGCTCGGGCGTGCCCTCAAGGCGCTGGACGTGCTGC
TGGAAAACGAGGACGACGTGCTCGAGTCTGAGACCCAGGAGGGCTACAAG
CGGCAGTACGTTGTCGTGGCCCTCGCCAACGAGATGGCGGCGGGATCGAT
GGCGGTGTCTCGGACCGCCAAGCCTGATGGGAACGAGTGCAGGAAGATGG
TCCGATTGTTGGAGGGCATCAATAGGGAGCTTACCAGCGTCATGCAGAAC
AGCGTCCAGATGAGCAAAACCCTTCTGGACTTGATGAAGAGCAAGTACAC
TCCGTTCCTGCCCGCTTCGTCCGGGGTGCAGAGCAAGCTGTCCTTCGGCG
GCAAGACTGTCACCTCCTTCGTGGGGGAGAACTCTAGCGACGATGACGAC
GACGATGATGATGATGATGAGGAGGAGGAGGACGAAACCGAGTCTCAGTG
A
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