mRNA_Ecto-sp13_S_contig62448.16972.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62448.16972.1
Unique NamemRNA_Ecto-sp13_S_contig62448.16972.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62448.16972.1 vs. uniprot
Match: D7FPC4_ECTSI (Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC4_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 5.840e-60
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = 2 
Query:   17 RQESNDAAVTALERGSGGARVRQRRRRRYLDLQVFCDDEDGEELRLPPVRLDMRSSARGSGVSPRRERERESAEGAVAAEVTEGRRGLLGRVWGAFFGPFQAGAGGSNVRGEIAGDSEE-EEWSESQED 400
            R ESNDAAVTAL+R SGGARVRQRRR  YLDLQVFCDDEDGEELRLPPVRLDMRSSARGSG SPRRERE ESAEGAVAAEV EGRRGL+GRVWGAFFGP QAG GGS+V GE+AGDSEE EEWSESQED
Sbjct: 1020 RHESNDAAVTALKRESGGARVRQRRR--YLDLQVFCDDEDGEELRLPPVRLDMRSSARGSGASPRREREEESAEGAVAAEVREGRRGLVGRVWGAFFGPLQAGVGGSSVEGEMAGDSEEDEEWSESQED 1146
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BLAST of mRNA_Ecto-sp13_S_contig62448.16972.1 vs. uniprot
Match: A0A6H5KE41_9PHAE (UBA_e1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE41_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.800e-44
Identity = 94/131 (71.76%), Postives = 99/131 (75.57%), Query Frame = 2 
Query:    5 DARGRQESNDAAVTALERGSGGARVRQRRRRRYLDLQVFCDDEDGEELRLPPVRLDMRSSARGSGVSPRRERERESAEGAVAAEVTEGRRGLLGRVWGAFFGPFQAGAGGSNVRGEIAGDSEEEE---WSE 388
            D  G   SNDAAVTALERGSGGARVRQRRR RYLDLQVFCDDEDGEELRLPPVRLDMRSSARGSG SPRRER                   L+GRVWGAFFGP QAG+GGS+V GE+A DSEEEE   WS+
Sbjct:  629 DTGGCHNSNDAAVTALERGSGGARVRQRRRSRYLDLQVFCDDEDGEELRLPPVRLDMRSSARGSGASPRRERXXXXXXXXXXXXXXXXXX-LVGRVWGAFFGPLQAGSGGSSVEGEMARDSEEEEEEEWSD 758
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62448.16972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPC4_ECTSI5.840e-6088.37Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus ... [more]
A0A6H5KE41_9PHAE1.800e-4471.76UBA_e1_C domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62448contigEcto-sp13_S_contig62448:238..797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score124.4
Seed ortholog evalue2.3e-26
Seed eggNOG ortholog2880.D7FPC4
Preferred nameINTS1
Model size560
KEGG koko:K03178,ko:K13138
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010466,GO:0010467,GO:0010605,GO:0010941,GO:0010951,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0030162,GO:0030880,GO:0031123,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032039,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034474,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040007,GO:0042795,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043628,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045861,GO:0046483,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2000117
Exons1
EggNOG free text desc.U2 snRNA 3'-end processing
EggNOG OGsCOG0476@1,KOG2012@2759,KOG4596@1,KOG4596@2759
EC6.2.1.45
Cds size231
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.687729-UTR-Ecto-sp13_S_contig62448:237..4091681463868.687729-UTR-Ecto-sp13_S_contig62448:237..409Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62448 238..409 +
1681463868.716053-UTR-Ecto-sp13_S_contig62448:640..7971681463868.716053-UTR-Ecto-sp13_S_contig62448:640..797Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62448 641..797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463868.7029357-CDS-Ecto-sp13_S_contig62448:409..6401681463868.7029357-CDS-Ecto-sp13_S_contig62448:409..640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62448 410..640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62448.16972.1prot_Ecto-sp13_S_contig62448.16972.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62448 410..640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62448.16972.1

>prot_Ecto-sp13_S_contig62448.16972.1 ID=prot_Ecto-sp13_S_contig62448.16972.1|Name=mRNA_Ecto-sp13_S_contig62448.16972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MRSSARGSGVSPRRERERESAEGAVAAEVTEGRRGLLGRVWGAFFGPFQA
GAGGSNVRGEIAGDSEEEEWSESQED*
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mRNA from alignment at Ecto-sp13_S_contig62448:238..797+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62448.16972.1 ID=mRNA_Ecto-sp13_S_contig62448.16972.1|Name=mRNA_Ecto-sp13_S_contig62448.16972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=560bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62448:238..797+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGACGCCAGAGGTCGCCAAGAAAGCAATGACGCCGCTGTAACGGCCC
TTGAGAGAGGAAGCGGTGGGGCGCGAGTCCGGCAGCGACGACGACGACGC
TACCTCGACCTCCAAGTGTTCTGCGACGACGAGGACGGGGAGGAGCTGAG
GCTTCCACCCGTGCGGCTTGACATGCGGAGTTCCGCACGCGGGAGCGGGG
TTTCTCCTAGGCGTGAGAGAGAAAGAGAAAGTGCGGAGGGGGCGGTGGCA
GCGGAAGTTACAGAAGGCCGGCGAGGTCTGCTAGGGAGGGTGTGGGGGGC
GTTCTTTGGACCGTTCCAGGCCGGGGCCGGGGGTAGCAATGTGAGGGGGG
AGATTGCCGGGGACAGTGAGGAAGAGGAGTGGTCTGAATCTCAAGAAGAT
TGACAGCAGTCGTCAGTGGAAGTCTTTTGTAGGGCCGTGAGCTTTTGAAA
GTCTGTCGACGCCAGACACGATAGACGAGGGGCGTTTGGTTTTGCTGAAG
CTACGGGAAACAAAAAATGCGCGTTTAGTTTGTCCTGTATTGGCGAGTAT
GTGTTGTAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62448:238..797+

>mRNA_Ecto-sp13_S_contig62448.16972.1 ID=mRNA_Ecto-sp13_S_contig62448.16972.1|Name=mRNA_Ecto-sp13_S_contig62448.16972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62448:238..797+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAGTTCCGCACGCGGGAGCGGGGTTTCTCCTAGGCGTGAGAGAGA
AAGAGAAAGTGCGGAGGGGGCGGTGGCAGCGGAAGTTACAGAAGGCCGGC
GAGGTCTGCTAGGGAGGGTGTGGGGGGCGTTCTTTGGACCGTTCCAGGCC
GGGGCCGGGGGTAGCAATGTGAGGGGGGAGATTGCCGGGGACAGTGAGGA
AGAGGAGTGGTCTGAATCTCAAGAAGATTGA
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