mRNA_Ecto-sp13_S_contig592.16453.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig592.16453.1 vs. uniprot
Match: D8LJ91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ91_ECTSI) HSP 1 Score: 574 bits (1480), Expect = 1.820e-203 Identity = 286/292 (97.95%), Postives = 291/292 (99.66%), Query Frame = 1
Query: 1 MKSVAFFVALFAATDAWRSIEVPEPSFGSRFTSIKEEADRFSAACRDVLNGEGPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNECRGMPTSLWVSTTQDLGDDMTANVRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGAWVVKGNVPLTSDGSTGAISFKRSITL 876
MKSVAFFVALFAATDAWR++EVPEPSFGSRFTSIKEEADRFSAACRD LNGEGPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNECRGMPTSLWVSTTQDLGDDMTAN+RADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGAWVVKGNVPLTS+G+TGAISFKRSITL
Sbjct: 1 MKSVAFFVALFAATDAWRTVEVPEPSFGSRFTSIKEEADRFSAACRDALNGEGPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNECRGMPTSLWVSTTQDLGDDMTANLRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGAWVVKGNVPLTSNGATGAISFKRSITL 292
BLAST of mRNA_Ecto-sp13_S_contig592.16453.1 vs. uniprot
Match: A0A6H5K004_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K004_9PHAE) HSP 1 Score: 569 bits (1466), Expect = 4.660e-200 Identity = 285/292 (97.60%), Postives = 289/292 (98.97%), Query Frame = 1
Query: 1 MKSVAFFVALFAATDAWRSIEVPEPSFGSRFTSIKEEADRFSAACRDVLNGEGPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNECRGMPTSLWVSTTQDLGDDMTANVRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGAWVVKGNVPLTSDGSTGAISFKRSITL 876
MKSVAFFVALFAATDAWR++EV EPSFGSRFTSIKEEADRFSAACRDVLNGEGPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNE RGMPTSLWVSTTQDLGDDMTAN+RADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVV+AAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEG WVVKGNVPLTSDGSTGAISFKRSITL
Sbjct: 81 MKSVAFFVALFAATDAWRTVEVAEPSFGSRFTSIKEEADRFSAACRDVLNGEGPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNERRGMPTSLWVSTTQDLGDDMTANLRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVIAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGPWVVKGNVPLTSDGSTGAISFKRSITL 372
BLAST of mRNA_Ecto-sp13_S_contig592.16453.1 vs. uniprot
Match: A0A836CCC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC7_9STRA) HSP 1 Score: 273 bits (697), Expect = 2.110e-85 Identity = 128/240 (53.33%), Postives = 181/240 (75.42%), Query Frame = 1
Query: 157 GPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNECRGMPTSLWVSTTQDLGDDMTANVRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGAWVVKGNVPLTSDGSTGAISFKRSITL 876
GP F ++++D SL DG GSLNLEG + RE+VDNV+ GV Y +N RG+P+SLWVST+ D+ DD +A+ D+ SK VI+ R+ G D +++DFDT + GPL++ K LD+NGR++ ++PT++V+ +TGE+V+ E+D D T+AELT+N A++SA LEV HRLDD NV+SPKV+LK+GD++VRLNR+L + ++ TA R+NVDWE+ E AW VKGN+PL G++ ISFKRSI L
Sbjct: 21 GPVFHVNINDPSLKDGAGSLNLEGEYSRELVDNVNAGVKYDYNANRGLPSSLWVSTSADIDDDTKLCAKAEYDVKSKATVIEARLERGSDGISIDFDTGSNEAGPLKLRKVLDMNGRRLTLEPTINVRDRTGELVINTEVDEDKTTAELTLNQADESASLEVSHRLDDFNVVSPKVNLKSGDVSVRLNRALDNGGVIEVTADRKNVDWEFNENAWTVKGNIPLEDTGAS-TISFKRSINL 259
BLAST of mRNA_Ecto-sp13_S_contig592.16453.1 vs. uniprot
Match: A0A836CPR3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR3_9STRA) HSP 1 Score: 252 bits (644), Expect = 1.880e-77 Identity = 123/250 (49.20%), Postives = 174/250 (69.60%), Query Frame = 1
Query: 127 AACRDVLNGEGPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNECRGMPTSLWVSTTQDLGDDMTANVRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGAWVVKGNVPLTSDGSTGAISFKRSITL 876
AA GP I+V D SLS GVGSLNL G RE+V+NV+ G+ Y +N RG+P+SLWVST+ ++ DD+ + +A+ D+ SK+ +I+ R+ G D +A+DFDT + GPLRI K D NGR+++V+P +V+ +TGE+V+ +E+D D+T+AELT++ A DSA LEV HRLD+ N++ PKVDLK GD++VRL R+L + + TA + N+DWE E +W VKGN+PL D ISFKRSI+L
Sbjct: 12 AAVATAKQTSGPVLHINVDDPSLSQGVGSLNLSGEVSRELVENVNAGLKYDYNTNRGLPSSLWVSTSAEVDDDVYVSAKAEYDLKSKSTIIEARLERGDDEIAIDFDTLTNEAGPLRIRKVFDANGRRLVVKPKFNVRDRTGELVINSEIDSDITTAELTLDQATDSASLEVSHRLDEYNIVCPKVDLKNGDMSVRLVRALENGGVLGVTADKRNIDWELEEDSWTVKGNIPL-EDTQRSTISFKRSISL 260 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig592.16453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig592.16453.1 >prot_Ecto-sp13_S_contig592.16453.1 ID=prot_Ecto-sp13_S_contig592.16453.1|Name=mRNA_Ecto-sp13_S_contig592.16453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp MKSVAFFVALFAATDAWRSIEVPEPSFGSRFTSIKEEADRFSAACRDVLNback to top mRNA from alignment at Ecto-sp13_S_contig592:5365..8918- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig592.16453.1 ID=mRNA_Ecto-sp13_S_contig592.16453.1|Name=mRNA_Ecto-sp13_S_contig592.16453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig592:5365..8918- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig592:5365..8918- >mRNA_Ecto-sp13_S_contig592.16453.1 ID=mRNA_Ecto-sp13_S_contig592.16453.1|Name=mRNA_Ecto-sp13_S_contig592.16453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig592:5365..8918- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |