mRNA_Ecto-sp13_S_contig59.16422.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59.16422.1
Unique NamemRNA_Ecto-sp13_S_contig59.16422.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59.16422.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.360e-40
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1
Query:    1 MASTKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
            MASTKPTYN MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK
Sbjct:    1 MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80          
BLAST of mRNA_Ecto-sp13_S_contig59.16422.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.120e-35
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 1
Query:    7 STKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAP 237
            + KPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMR ALKKGVESGKFIKMKASYKLS EAKKPAP
Sbjct:   96 TAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172          
BLAST of mRNA_Ecto-sp13_S_contig59.16422.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.750e-33
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
            MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKF+KMKASYKLSAEAKKPAPK
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70          
BLAST of mRNA_Ecto-sp13_S_contig59.16422.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 3.510e-30
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
            MVFDAIK+LKERNGSSIQAIKKSITATYP LNFTPHQMRSALKKGVE+GKFIK+K+SYKLSAEAKKP PK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70          
BLAST of mRNA_Ecto-sp13_S_contig59.16422.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.030e-29
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 MAST-KPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 234
            MA+T KPTY+VMVFDAIK LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKG ESGKFIK+K+SYKLS EAKKPA
Sbjct:    1 MATTAKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79          
BLAST of mRNA_Ecto-sp13_S_contig59.16422.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.860e-25
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 1
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 234
            MVFDAIK LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKG ESGKFIK+K+SYKLS EAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68          
BLAST of mRNA_Ecto-sp13_S_contig59.16422.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.110e-22
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 1
Query:   31 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLS 213
            MVFDAIKTLKERNGSSIQA+KKSITATYP L+FTPHQMRSALKKGVE+GKFIK++ +  L+
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61          
BLAST of mRNA_Ecto-sp13_S_contig59.16422.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.150e-21
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   16 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKP 231
            PTY+ M   AI  LKERNGSS+ AIKK I ATYPTLNF PHQ+R ALKKG E+G FIK+KASYK+S EAKKP
Sbjct:    2 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73          
BLAST of mRNA_Ecto-sp13_S_contig59.16422.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.410e-20
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:   16 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 240
            PTY+ M  +A+K LKERNGSS+ AIKK ITA+YP+L FT H MRSALKKGVESGKFIK+K SYKLSA  ++PA K
Sbjct:    2 PTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAK 76          
BLAST of mRNA_Ecto-sp13_S_contig59.16422.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.720e-18
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1
Query:   16 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSA 216
            PTY+ M  +A+K LKERNGSS+ AIKK ITA+YP+L FT H +RSALKKGVESGKFIK+K SYKLSA
Sbjct:    2 PTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLSA 68          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59.16422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI1.360e-4098.75Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE2.120e-3594.81H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KST0_9PHAE1.750e-3398.57H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI3.510e-3091.43H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI2.030e-2981.01H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JHR9_9PHAE1.860e-2582.35H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE5.110e-2281.97H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI1.150e-2172.22H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI1.410e-2070.67H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE1.720e-1873.13H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59contigEcto-sp13_S_contig59:41042..44157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score152.1
Seed ortholog evalue2.2e-34
Seed eggNOG ortholog2880.D7G189
Preferred nameH1
Model size1866
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
Exons3
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
Ec32 ortholog descriptionHistone H1
Ec32 orthologEc-26_005830.1
Cds size501
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463820.2780948-CDS-Ecto-sp13_S_contig59:41041..410711681463820.2780948-CDS-Ecto-sp13_S_contig59:41041..41071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59 41042..41071 +
1681463820.2896128-CDS-Ecto-sp13_S_contig59:41485..416441681463820.2896128-CDS-Ecto-sp13_S_contig59:41485..41644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59 41486..41644 +
1681463820.2989695-CDS-Ecto-sp13_S_contig59:42480..427921681463820.2989695-CDS-Ecto-sp13_S_contig59:42480..42792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59 42481..42792 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463820.3084836-UTR-Ecto-sp13_S_contig59:42792..441571681463820.3084836-UTR-Ecto-sp13_S_contig59:42792..44157Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig59 42793..44157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59.16422.1prot_Ecto-sp13_S_contig59.16422.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59 41042..42792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59.16422.1

>prot_Ecto-sp13_S_contig59.16422.1 ID=prot_Ecto-sp13_S_contig59.16422.1|Name=mRNA_Ecto-sp13_S_contig59.16422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
MASTKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRS
ALKKGVESGKFIKMKASYKLSAEAKKPAPKKKVVKKKVVKKVVQKKVVKK
KVPKKVAKKPAVKTTTKKPAAKKATTTKKTVTKKKPTAVKKPAAKKTTAK
KKPSTPKKKAAAPKKA*
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mRNA from alignment at Ecto-sp13_S_contig59:41042..44157+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59.16422.1 ID=mRNA_Ecto-sp13_S_contig59.16422.1|Name=mRNA_Ecto-sp13_S_contig59.16422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3116bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59:41042..44157+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCCACTAAGCCCACGTACAATGTGGTAAGACGACGGATCCGCGT TGAGAAGATCCACGCCAGACATCTGCACGCACCTCTAGATTCTTTCTTTA CTTGTTGTTTTTCGTGCGCGAAGTTGGAGGGGCATCTGTCGCTCGTTCTG TGATCGCGCATTTCATATTACCATGTGTCAGTACGTTGATTGCCATCACC GAACTGGTCTTCTCGACGCAAGCCTTCTCGCAGCCTGATCCGGGATCAGC CAATCCTCGTTTTGCGCCTGCTCCGACGCTGCACCTCGCCGGCTGCTTTT TCCCCCCAAAAACGATGCTTAGAAATCACAACTGAAACGGATCTGTTGCG GGCCCTGTCGACTCAGGCATGGCCGTTGCGCGCTCTCCCTGCTGCTGTAA CGCGTCCTTGACACCGTCCGCACCCTTGCGCCCGTCTCCTGCAGATGGTA TTTGATGCCATCAAGACCCTCAAGGAGCGTAACGGATCCTCCATCCAGGC CATCAAGAAGAGCATCACCGCCACCTACCCTACCCTCAACTTCACGCCGC ACCAGATGCGCAGCGCCCTCAAGAAGGGAGTTGAGTCCGGCAAGTTCATC AAGGTGAGACACGCCATCAACGAGGCAAACGGCCAAAATGTGTTGACAGG AAACCCTCACCCTTTCACGCTCTCGATATCCCACGCCTGCGCTACAACCC CACCTTTTCGATGTGCCTTTTTGTCATTTCTTGGAGAGCTACGTGCCACG TGGACACAATATTACCCTTCGACCAATCACAAAAGCGAGAGTGATTTTCG CCGGCTTTCCCTTACTTTTCGTGGGCACATCATATCGTTGTTTTCCTCCC TCTTAGAGTCTCACCACTCTTGTATATGCTCGCCGAGTGTGTCGTTGACA GTTGTATTGCTCTCTATTTCTCCCACCACTGGATGAGGTCAAGACGAAAC ATACATGTCTTCCGCGTTGTTTCTTCGAGTCTACTGCTGCATCTCTATTT TGTCCCGTTGCAAAAACAGGATTGTACGTCAAAGACGAACAGCTGTTCAC GCACGCCCCCCTGTATGTAGCGTTTACGTCGCATTCATCCTCGTGTGGTT GTGTCTTAAAGGATTTGATTTGTGAAGGTACGTCTGCGCTTTGTTGCACC GTATTCCTCGTGTGAAATCGCTCCTGAGGTGTTTATCTCTTCTGTGGGAT GCCTGCAGCACGATTGATTGATGGCACCGCGGTGGGCGGCAGCGTGTTGC ACCACGAACTTGGATATACAGAACATTCCAGTTATAGCAGTTTTTTTGCG TCGTTGAAATGTAAATATATGTATATTCTGAGAACGCTAGGTTTAAAGAC TTATTCAAAGTGCCGCTGCATATTTTTTCGAAACCTCACGGCCATGTCCT GCGTTCCCTGTTTGTTCCGTGATGTAACACACCCACTAGATGAAGGCCTC TTACAAGCTAAGCGCCGAGGCGAAGAAGCCCGCCCCCAAGAAGAAGGTCG TGAAAAAGAAGGTGGTGAAGAAGGTCGTCCAGAAGAAGGTGGTGAAGAAG AAGGTGCCGAAGAAGGTGGCCAAGAAGCCCGCTGTGAAGACCACGACGAA GAAGCCCGCCGCCAAGAAGGCCACCACCACCAAGAAGACCGTCACCAAGA AGAAGCCCACCGCCGTCAAGAAGCCCGCGGCTAAGAAGACCACCGCCAAG AAGAAACCCTCCACCCCCAAGAAGAAGGCTGCAGCTCCCAAGAAGGCCTA AGCTCAACCATCTACAATGCTGGCAAGGTTTCACTTCTCCAACCGGCACC CTCTCATGTTGGGTTCGACCCTCCCAGTCAAAAACAAACTGGTGTTTACT CAACACCACCCATGCGACCAAAGAATGAAAAGCAATCGCAAAGTGAGCGC TTGCGATAGCGATGGGTTCCAAAATTTGCCCGTCGAGCAGATATGGCGGT AACGCATCGCACTCTCCTCATGGAATTGCGTTTCATGAAGGTTCACCAGT GTCGTTGCTGTGTACCCATTTTTGTGTCGATGATCGTGATGGACAGAAAT CTTGTGGTTATTTTTAAGCGAAATAACTTAATGGCTGTCTTGCAATGTGA AGTGCGTGTGGTATTTGTTGGTGGTGCCTTGTGCAGATCTTGGATGTTGG TGTGATTCTTGTCGATAATTTTGTTGCCGTTGTCGCCACCGGAACGTTCG TTGCTGTTGCATACAGAGAGACTTGTAACTGAATTTGTCCCTCCAACGCG GCACACTCCAAGGGCATGGCGACTTAAGCGCCATGGTTGTAATTGCACGT GCTTAGATGATGTGCTGTGGTTGCTGTCCTCGCCACGTTGACGTTCGAGA AACCCTTCGGGACAAATATCGTATCGTAAGTTGACATAGGCATCAAACCT GCCCGGCAGGGAAGACGTTGAGATGTGAATTTTGTATTTTTGTACACCTT TTTAGCACTTGCCTTCTGGGGTGTAAACGTTTTCTAAATAAGAATGCTTT TACCCTCGGTGACGAACTGACGTAGGTTGGTTGTGCAAGGCTTTTCTAGG TATTGGAGCTTTGTGTACATTAAACTTCACAATATTAAGTTACAATGAAG ATTTTTGACACAACTTTTGCTACCATCCCACTCGCACGTGAGCACGTGAA TCAAAGGGAATTCTAGGAAGTACGACACTGCGCCCAGAATAAACATGTCG ATAGTTTTTTCTTTCCATGCATGAGTCGCGTGTGTTGCCATGATCAGTTT TAGTGTTGTGTGTGTAGTATGGTAGAGGGCAAACTCCTACTGTTGTTGTA ATCAAAACGTACAACACGAGTGTTGTCCTGGATGGCAGGAGTGCATCTAT CTGCGGCACACGTCCGTGGCGATGGAATGTAGAGGTGGGAGGGGGAGGAA ACAGGGACTACTCGTGTATGTTTAGAAACATCAGGCGATCCGATATCTTT CTCGCGGGGTTTTCTCTCTTCGCGTCATTGTCCGGACGAGTTTTTTTCTG CCGCCGGAAACGCCAAGTTATATATTTGCATTGCATTCCTCATGCTTGAC TCCTGCGTCGTGGTCATGGAGGAAGGTGACCGCTATGAATGGCTGAATTA GCGCTGTACTCCGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59:41042..44157+

>mRNA_Ecto-sp13_S_contig59.16422.1 ID=mRNA_Ecto-sp13_S_contig59.16422.1|Name=mRNA_Ecto-sp13_S_contig59.16422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59:41042..44157+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCCACTAAGCCCACGTACAATGTGATGGTATTTGATGCCATCAA
GACCCTCAAGGAGCGTAACGGATCCTCCATCCAGGCCATCAAGAAGAGCA
TCACCGCCACCTACCCTACCCTCAACTTCACGCCGCACCAGATGCGCAGC
GCCCTCAAGAAGGGAGTTGAGTCCGGCAAGTTCATCAAGATGAAGGCCTC
TTACAAGCTAAGCGCCGAGGCGAAGAAGCCCGCCCCCAAGAAGAAGGTCG
TGAAAAAGAAGGTGGTGAAGAAGGTCGTCCAGAAGAAGGTGGTGAAGAAG
AAGGTGCCGAAGAAGGTGGCCAAGAAGCCCGCTGTGAAGACCACGACGAA
GAAGCCCGCCGCCAAGAAGGCCACCACCACCAAGAAGACCGTCACCAAGA
AGAAGCCCACCGCCGTCAAGAAGCCCGCGGCTAAGAAGACCACCGCCAAG
AAGAAACCCTCCACCCCCAAGAAGAAGGCTGCAGCTCCCAAGAAGGCCTA
A
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