mRNA_Ecto-sp13_S_contig585.16332.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig585.16332.1
Unique NamemRNA_Ecto-sp13_S_contig585.16332.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig585.16332.1 vs. uniprot
Match: D7FZC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC0_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.890e-32
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   79 VWDGNNN-INARQQQREHGNNSKTSDSCTPTARADREGKSVDGFVSRPSPTCTGRLSSRSTGPYQVHGTIRPN 294
            VW+GNNN I+ARQ+QREHG+NSK SDSCTPTARADREGKSVDGFVSR  P+CTGRLSSRSTGP QV+GTIRPN
Sbjct:   19 VWNGNNNNISARQRQREHGSNSKISDSCTPTARADREGKSVDGFVSRAFPSCTGRLSSRSTGPCQVYGTIRPN 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig585.16332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZC0_ECTSI1.890e-3284.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig585contigEcto-sp13_S_contig585:17624..18949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size648
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_001670.1
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463812.3438907-CDS-Ecto-sp13_S_contig585:17623..177011681463812.3438907-CDS-Ecto-sp13_S_contig585:17623..17701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig585 17624..17701 +
1681463812.3537357-CDS-Ecto-sp13_S_contig585:18379..186731681463812.3537357-CDS-Ecto-sp13_S_contig585:18379..18673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig585 18380..18673 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463812.3734863-UTR-Ecto-sp13_S_contig585:18673..189491681463812.3734863-UTR-Ecto-sp13_S_contig585:18673..18949Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig585 18674..18949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig585.16332.1prot_Ecto-sp13_S_contig585.16332.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig585 17624..18673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig585.16332.1

>prot_Ecto-sp13_S_contig585.16332.1 ID=prot_Ecto-sp13_S_contig585.16332.1|Name=mRNA_Ecto-sp13_S_contig585.16332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
KNDGRSDDGSDDRKIVTTTLYEHIFEVWDGNNNINARQQQREHGNNSKTS
DSCTPTARADREGKSVDGFVSRPSPTCTGRLSSRSTGPYQVHGTIRPNKR
RPLADSGVIIRRKESFSVVFCVL*
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mRNA from alignment at Ecto-sp13_S_contig585:17624..18949+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig585.16332.1 ID=mRNA_Ecto-sp13_S_contig585.16332.1|Name=mRNA_Ecto-sp13_S_contig585.16332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1326bp|location=Sequence derived from alignment at Ecto-sp13_S_contig585:17624..18949+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAATGATGGACGCTCCGACGACGGGAGCGACGACAGGAAAATTGTGAC
AACTACGCTTTATGAGCACATATTCGAGGTCCACTACTGTACGGCGCCAT
CTGATGCAATCACTCAGGCAGTGCAACACTCTGTTGGTTGTAGTACCTCG
CGTGGTTTCAGTGTATTGGTGTACTCAAGGCTGCTTGAAGGCCGGTCGTA
GTGCATTTATTGACCGGGGCCAGAACGTTGATGGAAGGCCCCTCTGGGAA
ATCTTGTTAACCACACACCACCCATTAGGCAGCAAGATTGATCTGCGCAG
GTTGCAAAAGATTTCTTCAGCGAAAGCGACAATGAAAAGTGATCAGGACC
AACGACCACGCACGTAGCGCCTTAAGAACGACTAGTGTACGCATTTACTT
TTTGGTGGACATTTGGTGTCGGTCCCGGTCTTGGTTTCGGTCGTGCTGAA
CGCTTCAACATCGAAACTGTGTACACTTTCAACTTGTCCCTAGCAGTTTG
TATTTCACGTTCAATCTCGGTTTTCATGTCTTCTTTTGAAGTACTGTTTT
GTTTCTTGGGATGCACGATTTTGCCACAGCTGTTTCAACCCGTTTGGGTA
TTCTCTGAAAATGAACGACGCGGGCGAGAGACTGAATATGTTGGAACTTG
TCGAAGTCCTTCCGTTGAGAGTTTTGTGTTGCCAGATAGAAAGGACTACG
CACTCTAATATGACGGGGTCCCATGTGCGGGTTACCACCTCCGTCCCCAT
GTGCAGGTGTGGGACGGCAATAACAACATCAACGCCAGACAGCAACAACG
AGAGCACGGCAACAACAGCAAAACCAGTGACAGTTGCACACCCACGGCCC
GTGCTGACAGGGAAGGGAAATCGGTCGATGGCTTTGTGTCACGGCCTTCA
CCCACTTGTACTGGACGACTATCCTCTCGCTCGACTGGCCCCTATCAAGT
ACATGGAACCATTCGTCCAAACAAGAGGCGCCCCCTCGCGGATAGTGGTG
TTATAATACGAAGGAAGGAAAGTTTCAGCGTAGTTTTTTGTGTTTTATAA
GAAATGGAGACAGCGGGTCAACAAGCCTCACGACCGCCAAGGTTGGTTGT
CTTCGCCTCCACCATTCATTCACGAGCGCTACGCTCGCTGAAGTAAAGGG
GCATATGGGTGCGCACTATTGATCGTATCCCAACGAATTCGCGAACCGTT
TGGTGTTGTGCTATCTTGCCATCCCCTCAACTTCAACTCAGAGAGGTCCT
GCAGGAATAATCACCAGTCGTTTTTCGACCACAAGCGCACTCAGATTGAC
ATGACAACGAGAAGATGATCAGAGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig585:17624..18949+

>mRNA_Ecto-sp13_S_contig585.16332.1 ID=mRNA_Ecto-sp13_S_contig585.16332.1|Name=mRNA_Ecto-sp13_S_contig585.16332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig585:17624..18949+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAATGATGGACGCTCCGACGACGGGAGCGACGACAGGAAAATTGTGAC
AACTACGCTTTATGAGCACATATTCGAGGTGTGGGACGGCAATAACAACA
TCAACGCCAGACAGCAACAACGAGAGCACGGCAACAACAGCAAAACCAGT
GACAGTTGCACACCCACGGCCCGTGCTGACAGGGAAGGGAAATCGGTCGA
TGGCTTTGTGTCACGGCCTTCACCCACTTGTACTGGACGACTATCCTCTC
GCTCGACTGGCCCCTATCAAGTACATGGAACCATTCGTCCAAACAAGAGG
CGCCCCCTCGCGGATAGTGGTGTTATAATACGAAGGAAGGAAAGTTTCAG
CGTAGTTTTTTGTGTTTTATAA
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