mRNA_Ecto-sp13_S_contig5841.16319.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5841.16319.1 vs. uniprot
Match: D8LSE4_ECTSI (Glutaredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE4_ECTSI) HSP 1 Score: 201 bits (511), Expect = 1.650e-59 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 3
Query: 510 SMNSVDFVEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLDG 809
SMNSVDFVEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLDG
Sbjct: 56 SMNSVDFVEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLDG 155
BLAST of mRNA_Ecto-sp13_S_contig5841.16319.1 vs. uniprot
Match: A0A835YTN8_9STRA (Glutaredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN8_9STRA) HSP 1 Score: 129 bits (324), Expect = 6.130e-32 Identity = 63/95 (66.32%), Postives = 73/95 (76.84%), Query Frame = 3
Query: 525 DFVEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLDG 809
DFV+++I S ++VVFSKSYCP+C +TK LF L ATV ELDQ DDG IQA L TGQ TVPNVFVKGTHVGGNDA Q ANS G LK+L++G
Sbjct: 66 DFVKQQIASQDIVVFSKSYCPYCAKTKALFQSLDAGATVIELDQRDDGGDIQAALAEITGQRTVPNVFVKGTHVGGNDATQKANSDGTLKSLMNG 160
BLAST of mRNA_Ecto-sp13_S_contig5841.16319.1 vs. uniprot
Match: A0A7S2R353_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R353_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.400e-30 Identity = 67/126 (53.17%), Postives = 84/126 (66.67%), Query Frame = 3
Query: 432 LGVGGLGPYLLCRSTRVACRPRLLARSMNSV-DFVEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLD 806
L G LG L+ S R + M+S DFV++EI +N+VVVFSKS+CPFC +TK+L G+ +D T EL+QMDDG IQ L +GQ TVPNVFVKG H+GGND Q A SGALKT+L+
Sbjct: 33 LARGALGASLVSNSRRCNSQDSQTVCQMSSASDFVKQEIANNDVVVFSKSFCPFCKKTKSLLDGMDIDYTALELNQMDDGADIQDALMDLSGQRTVPNVFVKGNHLGGNDDAQKAAKSGALKTMLE 158
BLAST of mRNA_Ecto-sp13_S_contig5841.16319.1 vs. uniprot
Match: A0A168RTQ5_ABSGL (Glutaredoxin domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168RTQ5_ABSGL) HSP 1 Score: 121 bits (303), Expect = 9.430e-30 Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = 3
Query: 531 VEKEIDS----NNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLL 803
VE+++DS N VV+FSKSYCP+C+ TKNLF LGV+A V ELDQ+DDG AIQ L KTGQ TVPNVFV HVGGN VQAANS+G+L+ LL
Sbjct: 5 VEEKVDSLIKNNKVVIFSKSYCPYCSATKNLFKQLGVEAVVLELDQIDDGAAIQDYLQKKTGQRTVPNVFVAQQHVGGNSDVQAANSNGSLEKLL 99
BLAST of mRNA_Ecto-sp13_S_contig5841.16319.1 vs. uniprot
Match: A0A1Z5KQE3_FISSO (Glutaredoxin 3 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQE3_FISSO) HSP 1 Score: 122 bits (305), Expect = 2.020e-29 Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 3
Query: 498 LLARSMNS-VDFVEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLL 803
L R M S DF+ EI+SN V +FSKSYCPFC++TK FA LGVDA ++EL+QMDDG IQ L TGQ TVPNVFV G H+GGND Q A +SG +K LL
Sbjct: 44 LTVRHMASKTDFITSEINSNQVTIFSKSYCPFCSKTKASFAELGVDAKIFELNQMDDGADIQDTLFEMTGQKTVPNVFVNGKHIGGNDDTQKAIASGEMKKLL 146
BLAST of mRNA_Ecto-sp13_S_contig5841.16319.1 vs. uniprot
Match: A0A1X2GSF3_9FUNG (Glutaredoxin n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GSF3_9FUNG) HSP 1 Score: 119 bits (299), Expect = 4.460e-29 Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 3
Query: 531 VEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLD 806
VE+ I +N +V+FSK+YCP+CT TK LF LG DAT+ ELD +DG AIQ L KTGQ TVPNVFVK H+GGND VQAAN +G LK LL+
Sbjct: 16 VEELIANNKIVIFSKTYCPYCTSTKTLFKKLGQDATIIELDTRNDGSAIQNYLLTKTGQRTVPNVFVKQQHIGGNDNVQAANGNGTLKKLLE 107
BLAST of mRNA_Ecto-sp13_S_contig5841.16319.1 vs. uniprot
Match: A0A7S1CWF6_9CHLO (Hypothetical protein n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CWF6_9CHLO) HSP 1 Score: 120 bits (302), Expect = 4.550e-29 Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 3
Query: 531 VEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLD 806
V+ I + +VVVFSKS+CPFC +TK LF LGVDA +YELDQ DDG IQA L TGQ+TVPNVF+KG H+GGND Q AN+SG L +L+
Sbjct: 50 VDDAIKAKDVVVFSKSFCPFCAKTKTLFRELGVDADIYELDQRDDGSEIQATLKEMTGQSTVPNVFIKGEHLGGNDDTQQANASGELAKMLE 141
BLAST of mRNA_Ecto-sp13_S_contig5841.16319.1 vs. uniprot
Match: A0A7S3NI43_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NI43_9STRA) HSP 1 Score: 120 bits (301), Expect = 4.990e-29 Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 3
Query: 483 ACRPRLLARSMNSVDFVEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLL 803
A R + A +N ++ I +N+VV+FSKSYCPFC +TK LF L VDA +YELDQ DDG IQ+ L KTGQ+TVPNVF+KG H+GGND Q A++SG L LL
Sbjct: 31 AARRSMAASCLN----IDDTIKANDVVIFSKSYCPFCAKTKALFQSLNVDADIYELDQRDDGAEIQSKLKEKTGQSTVPNVFIKGEHLGGNDDTQRAHASGKLAELL 133
BLAST of mRNA_Ecto-sp13_S_contig5841.16319.1 vs. uniprot
Match: A0A1Z5KSJ8_FISSO (Glutaredoxin 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSJ8_FISSO) HSP 1 Score: 118 bits (295), Expect = 1.310e-28 Identity = 58/93 (62.37%), Postives = 70/93 (75.27%), Query Frame = 3
Query: 525 DFVEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLL 803
DF++KE D++ VVV+SKSYCP+CT TKNLF L V V+ELDQM +G IQA L TGQ TVPNVF+KG H+GGND QAA+ SG L+ LL
Sbjct: 6 DFIQKEHDASPVVVWSKSYCPYCTATKNLFQKLNVPHKVHELDQMSNGNDIQAALQQMTGQRTVPNVFIKGKHLGGNDDTQAAHRSGHLQQLL 98
BLAST of mRNA_Ecto-sp13_S_contig5841.16319.1 vs. uniprot
Match: A0A7S2L780_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L780_9STRA) HSP 1 Score: 118 bits (296), Expect = 5.790e-28 Identity = 64/101 (63.37%), Postives = 72/101 (71.29%), Query Frame = 3
Query: 510 SMNSVD---FVEKEIDSNNVVVFSKSYCPFCTRTKNLFAGLGVDATVYELDQMDDGEAIQAILGAKTGQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLL 803
SM+S D FV EI SN+VVVFSK+YCPFCT TK LF L VDA V ELD +D+G IQ L KTGQ TVP+VF+KG H+GGNDA QAA SG L T L
Sbjct: 52 SMSSTDSAAFVLAEIGSNDVVVFSKTYCPFCTSTKTLFEKLNVDAKVVELDTLDNGADIQGALLDKTGQRTVPSVFIKGEHIGGNDATQAAFQSGDLFTKL 152 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5841.16319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5841.16319.1 >prot_Ecto-sp13_S_contig5841.16319.1 ID=prot_Ecto-sp13_S_contig5841.16319.1|Name=mRNA_Ecto-sp13_S_contig5841.16319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp MTLVPRTIATTTKPETLAKSPLGVGGLGPYLLCRSTRVACRPRLLARSMNback to top mRNA from alignment at Ecto-sp13_S_contig5841:5052..8389- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5841.16319.1 ID=mRNA_Ecto-sp13_S_contig5841.16319.1|Name=mRNA_Ecto-sp13_S_contig5841.16319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3338bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5841:5052..8389- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5841:5052..8389- >mRNA_Ecto-sp13_S_contig5841.16319.1 ID=mRNA_Ecto-sp13_S_contig5841.16319.1|Name=mRNA_Ecto-sp13_S_contig5841.16319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5841:5052..8389- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |