mRNA_Ecto-sp13_S_contig5825.16294.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5825.16294.1
Unique NamemRNA_Ecto-sp13_S_contig5825.16294.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5825.16294.1 vs. uniprot
Match: A0A6H5L1B7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B7_9PHAE)

HSP 1 Score: 801 bits (2070), Expect = 5.310e-281
Identity = 531/660 (80.45%), Postives = 537/660 (81.36%), Query Frame = 2
Query:  197 MTVNLTRDEGCELPLNAPRRPQHDESSRKAAESSSXXXXFSGGRASAPRATATRPRSNADCLLGGIGAGGVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---VAFRRLTPPVTSTETIDTPVPLYPTCLDACGNMVALGTREGPVLLFDTTYGXXXXXXXXXXXXXXXXXXSDRCRDGVPPALETNAIAVRSVMTPRAAAA---------ALAGSSNRSGSTASVTRVYGSLADGTGPTTAVLLDRAKVIAAGRGSRRSGGGFVIRIYAVDSTRLLRTLRCLSEVSRMSLFDPVLAVLSSGSGRLSFRDLYADGGGGLGQRTAMGVSAAAFAAVEGHLTNTXXXXXXXXXXXGCSNTGATRPDYNGDGSTVLHCVNSTGTVFEASTSGAAWNSELIAPGGSEGGAVPAAAAGGG-WHVCADLEASLLVLATPWGTISGWRLHPSGRRARGPIFCFGLGSSCSASPSPSSRPLTSMSLTAGGLILATSAEGAPPRLWDMRLARRRCGWGLAADGGGPSQAGGARASGLRGTPAGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSTRQEGS-ADDADGRGGRFKTGRARCVGVRPWPVGAWAVGVAANAGSGRLVSACSDGRMRI 2134
            MTVNLTRDEG E PLNAPRRPQHDESSRKA     XXXX    RASAPRATATRPRSNADCLLGG GA GV+S                       XXXXXXX                  VAFRRLTPPVT+TETIDTPVPLYPTCLD CGNMVALGTREGPVLLF TT G XXXXXXXXXXXXX    S   RDG P ALETNA A RS MTP AA A         ALAGSSNRSGSTASVTR YGSLADGTGPTTAVL+DRAKVIAAGRGSRRSGGGFVIRIYAVDSTRLLRTLRCLSEVSRMSLFDPVLAVLS GSGRLSFRDLYADGGGGLGQRTAMGVSAAAFAAVEGHLTN XXXXXXXXXXX    TG  RPDYNGDG+TVLHCVNSTGTVFEASTSGAAWNSELIAPGGSEGGA PAAAA GG WHVCADLEASLLVLATPWG ISGWRL+PSGRRARGPIFCFGLGSSCSASPSPSSRPLTSMSLTAGGLILATSAEGAPPRLWDMRL RRRCGWGLAADGGGPS AGGARASGLRGTPAGGRGXXXXXXXXXXXXXXXXXXXXXXX                    GSTRQEGS ADDAD RGGR   GRAR VGVRPWPVG WAVGVAANAGSGRLVSACSDGRMR+
Sbjct:    1 MTVNLTRDEGYEPPLNAPRRPQHDESSRKAXXXXXXXXXXXXXRASAPRATATRPRSNADCLLGGTGAVGVASSPPAGCYGGGASGAGTRKRNRAAXXXXXXXTASGATARRKFLRRYYHHVAFRRLTPPVTNTETIDTPVPLYPTCLDTCGNMVALGTREGPVLLFHTTNGSXXXXXXXXXXXXX----SGSYRDGAPLALETNAAAGRSAMTPPAARAPGKAATPTTALAGSSNRSGSTASVTRAYGSLADGTGPTTAVLVDRAKVIAAGRGSRRSGGGFVIRIYAVDSTRLLRTLRCLSEVSRMSLFDPVLAVLSLGSGRLSFRDLYADGGGGLGQRTAMGVSAAAFAAVEGHLTNNXXXXXXXXXXXX---TGTIRPDYNGDGTTVLHCVNSTGTVFEASTSGAAWNSELIAPGGSEGGADPAAAAAGGRWHVCADLEASLLVLATPWGAISGWRLNPSGRRARGPIFCFGLGSSCSASPSPSSRPLTSMSLTAGGLILATSAEGAPPRLWDMRLTRRRCGWGLAADGGGPSGAGGARASGLRGTPAGGRGXXXXXXXXXXXXXXXXXXXXXXXGAVA---------------AGSTRQEGSRADDADSRGGRVAAGRARYVGVRPWPVGIWAVGVAANAGSGRLVSACSDGRMRL 638          
BLAST of mRNA_Ecto-sp13_S_contig5825.16294.1 vs. uniprot
Match: D7FPS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS2_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 5.980e-118
Identity = 254/386 (65.80%), Postives = 262/386 (67.88%), Query Frame = 2
Query:   41 MDPGPSPSSSLPLHVVVTLLQFAVPEVVSLGEAQLLCKGASSSLASPAFWRGMTVNLTRDEGCELPLNAPRRPQHDESSRKAAESSSXXXXFSGGRASAPRATATRPRSNADCLLGGIGAGGVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------VAFRRLTPPVTSTETIDTPVPLYPTCLDACGNMVALGTREGPVLLFDTTYGXXXXXXXXXXXXXXXXXXSDRCRDGVPPALETNAIAVRSVMTPRAAAAALAGSSNRSGSTASVTRVYGSLADGTGPTTAVLLDRAKVIAAGRGSRRSGGGFVIRIYAVDSTRLLRTLRCLSEVSRMSLFDPVLAVLSSGSGRLSFRDLYADGGGGLGQR 1180
            MDPGPSPSS LPLHVVVT+LQFAVPEVVSL EA+LLCKGASSSLASP+FWRGMTVNLTRDEG E PLN+PRRPQHDESS K +    XXXX         RATATRPRSN DCLLGGIG  G++S                   XXXXXXXXXXXXXXXXXX              VAFRRLTPPVTSTETIDTPVPLYPTCLDAC    A   R        TT                                                  AL  SSNRS STASVTRVYGSLADGTGPTTAVLLDRAKVIAAGRGSRRSGGGFVIRIYAVDSTRLLRTLRC+SEVSRMSLFDPVLAVLS GSGRLSFRDLYADGGGGLGQR
Sbjct:    1 MDPGPSPSSRLPLHVVVTVLQFAVPEVVSLSEARLLCKGASSSLASPSFWRGMTVNLTRDEGYEPPLNSPRRPQHDESSSKVSAXXXXXXXXXXXXXXXXRATATRPRSNVDCLLGGIGVAGLASSPPAGCHGGGAISGAGTRKXXXXXXXXXXXXXXXXXXATAGRQFLRRYHHHVAFRRLTPPVTSTETIDTPVPLYPTCLDAC----AAAARVPGKAATPTT--------------------------------------------------ALNRSSNRSESTASVTRVYGSLADGTGPTTAVLLDRAKVIAAGRGSRRSGGGFVIRIYAVDSTRLLRTLRCVSEVSRMSLFDPVLAVLSWGSGRLSFRDLYADGGGGLGQR 332          
BLAST of mRNA_Ecto-sp13_S_contig5825.16294.1 vs. uniprot
Match: D7FPS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS3_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.940e-10
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 2
Query: 2126 MRITQLRPNNEEQRLRTAVLAARQAKQQAAARSGDAP 2236
            MRITQLRPNNEEQRLRTAVLAARQAKQQAAARSG AP
Sbjct:    1 MRITQLRPNNEEQRLRTAVLAARQAKQQAAARSGGAP 37          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5825.16294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1B7_9PHAE5.310e-28180.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS2_ECTSI5.980e-11865.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPS3_ECTSI6.940e-1097.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5825contigEcto-sp13_S_contig5825:1201..8170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2717
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001520.3
Cds size2199
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5825.16294.1prot_Ecto-sp13_S_contig5825.16294.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5825 1241..7692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463809.2214155-UTR-Ecto-sp13_S_contig5825:1200..12401681463809.2214155-UTR-Ecto-sp13_S_contig5825:1200..1240Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5825 1201..1240 +
1681463809.307231-UTR-Ecto-sp13_S_contig5825:7692..81701681463809.307231-UTR-Ecto-sp13_S_contig5825:7692..8170Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5825 7693..8170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463809.2328858-CDS-Ecto-sp13_S_contig5825:1240..13321681463809.2328858-CDS-Ecto-sp13_S_contig5825:1240..1332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5825 1241..1332 +
1681463809.242846-CDS-Ecto-sp13_S_contig5825:2115..25511681463809.242846-CDS-Ecto-sp13_S_contig5825:2115..2551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5825 2116..2551 +
1681463809.2534575-CDS-Ecto-sp13_S_contig5825:3110..35561681463809.2534575-CDS-Ecto-sp13_S_contig5825:3110..3556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5825 3111..3556 +
1681463809.2706206-CDS-Ecto-sp13_S_contig5825:4196..43591681463809.2706206-CDS-Ecto-sp13_S_contig5825:4196..4359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5825 4197..4359 +
1681463809.280238-CDS-Ecto-sp13_S_contig5825:4823..51411681463809.280238-CDS-Ecto-sp13_S_contig5825:4823..5141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5825 4824..5141 +
1681463809.2889173-CDS-Ecto-sp13_S_contig5825:6074..67091681463809.2889173-CDS-Ecto-sp13_S_contig5825:6074..6709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5825 6075..6709 +
1681463809.298192-CDS-Ecto-sp13_S_contig5825:7583..76921681463809.298192-CDS-Ecto-sp13_S_contig5825:7583..7692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5825 7584..7692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5825.16294.1

>prot_Ecto-sp13_S_contig5825.16294.1 ID=prot_Ecto-sp13_S_contig5825.16294.1|Name=mRNA_Ecto-sp13_S_contig5825.16294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=733bp
MDPGPSPSSSLPLHVVVTLLQFAVPEVVSLGEAQLLCKGASSSLASPAFW
RGMTVNLTRDEGCELPLNAPRRPQHDESSRKAAESSSSASSFSGGRASAP
RATATRPRSNADCLLGGIGAGGVSSPPPAGCHGGGASGAGTRKKRRAAGA
ERTAAGSTARRQFLRRYHHHVAFRRLTPPVTSTETIDTPVPLYPTCLDAC
GNMVALGTREGPVLLFDTTYGGGGSGGGGGRSGGGGGGGSDRCRDGVPPA
LETNAIAVRSVMTPRAAAAALAGSSNRSGSTASVTRVYGSLADGTGPTTA
VLLDRAKVIAAGRGSRRSGGGFVIRIYAVDSTRLLRTLRCLSEVSRMSLF
DPVLAVLSSGSGRLSFRDLYADGGGGLGQRTAMGVSAAAFAAVEGHLTNT
TTTNNNNDNNNGCSNTGATRPDYNGDGSTVLHCVNSTGTVFEASTSGAAW
NSELIAPGGSEGGAVPAAAAGGGWHVCADLEASLLVLATPWGTISGWRLH
PSGRRARGPIFCFGLGSSCSASPSPSSRPLTSMSLTAGGLILATSAEGAP
PRLWDMRLARRRCGWGLAADGGGPSQAGGARASGLRGTPAGGRGGGSAAA
AAAAAAAGGGAAVAAAAAAAARGAAAAAAAAAGAAATGSTRQEGSADDAD
GRGGRFKTGRARCVGVRPWPVGAWAVGVAANAGSGRLVSACSDGRMRITQ
LRPNNEEQRLRTAVLAARQAKQQAAARSGDAP*
back to top

mRNA from alignment at Ecto-sp13_S_contig5825:1201..8170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5825.16294.1 ID=mRNA_Ecto-sp13_S_contig5825.16294.1|Name=mRNA_Ecto-sp13_S_contig5825.16294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6970bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5825:1201..8170+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTACACACACTACTCTGCCAGCCCATCGCCCGGCGTTCATATGGACCCTG GACCCTCCCCATCGAGCAGTCTACCTCTTCATGTCGTCGTCACATTGCTG CAGTTTGCTGTTCCTGAGGTAGTGTCGCTGGGGTGAGTCCGTGAGTCCAT TCGATACTTCTACATACAGTCGGCGGGCCCATGTTCTCCAGCTGTCCCTG TGTCTGCTGCTGAACAGCAGTCTTTGGGGGCGTGCACGACTGCTACATTA CACTCACTCTTGTATTTGGGTAGGTCCTCGAAAATAGAGAGGACTAGGTG CTATTGTACATCACTACAACACTGTTTAGCGCAACTCTATATAATACTGT TCAGCTCTATGGAAATCCGACACGTTAGTCGTTGACCACTCTCTACAACA TTTGTGTACAGCAGTATTGTAGATGCTGCTGTGTAGTTCGGCTGGCTAGC AACACATCGGTCCGTAGAACCACCAGTGAGTTCGATTTTCTCTTTCTCTC CGGATGGGTTTGTGTTTTTCTTGCAATTTGAAGGTAGGACTCACGTGAGT AATTATTCACAAATATCCCATCAACTTCACAAGGAAGAGGCTTCTAACGA TCAAAACTATGTAGGGCAACTACCGCAAAAGGGGTGGAGGTGAAGCAAAT GAAAAATGGAATGATATGAAAGCGGCTTTTACGTCAAACAAATACACACC GAGGGTGTGTTGCGACAGAAAAGATGGGAGGAACGATATCTAACAAGGTC GGCGCTGTCCAACCCATGCACGGCAACAGACACTTTCGCTATTTCTGAAG TTGAATGCGTGACCGAGAAGCCTCCCCCCTTCTCGCGACGTGTTAATTTC GACACTCGTACGCCTCCATTTTCCTCCTTCTCTGTGCCACCACCACTACT AAATGGTACCCGCAGCGAGGCCCAACTCCTCTGCAAAGGGGCATCCTCGT CGCTCGCCTCCCCCGCCTTCTGGCGGGGCATGACCGTCAACCTCACCCGC GACGAGGGATGCGAACTGCCGCTAAACGCCCCCCGCCGCCCCCAGCATGA CGAGAGTAGCCGCAAGGCCGCGGAATCTTCTTCCTCCGCCTCATCGTTCT CCGGCGGACGCGCCTCGGCGCCCAGGGCAACGGCAACAAGACCCAGGAGC AACGCTGATTGCCTTCTGGGCGGCATCGGGGCAGGCGGCGTCTCGTCCCC GCCACCTGCCGGCTGCCATGGCGGTGGTGCAAGCGGCGCCGGGACAAGGA AGAAAAGACGGGCGGCGGGGGCGGAAAGAACGGCGGCGGGGTCGACAGCA AGACGGCAGTTCCTTCGGCGATACCACCACCACGTTGCGTTCCGACGCTT GGTGAGTGCCGGACGGTCGAAGCTACATCTGCGCACCGCTGCTATTTTTC TTGGTGGTCGTAACTGGCTGTGTTCGATTTTTCTTGGTATGATCAGGTAG CATCGCACGGCATCACACACGGCCGTTCATTCGTACACGATGCTTCGTCT CCACAACCTGCTCTACAAAGCGTGCCACGAGTTGCTTCGAAGTTAGAAGA GCTTGGTCGTTCAGAACTTGAGGGTCTAGTTTTTGAAGATGTTCGAACTT CGACCCCAACTCACACTAAAAACCTCCATATTTTCTACCGGTTTTCTTGC AGAGGAGGTAAGACGGTAGGATTGCCCACGGCAAGATAATTTCTTAAATG GCGGCGCGTTCTGCAAGCACGTGGCCTCCAACATATTGTCGGGGGCGGAA TGATCGGTTGTATCTACTTGTTTTTTTTCTCCTCCTAGCTGGGATTCTTG CACGAGTACGTGTACGCTCGACAGAACCGCCACACCTCTTTCAAACTACA ACGCTTATCGCTTGGCATATCATCGTGTGTTACCCCCCGTCCACGCGTGC TCTACAACAGACCCCTCCGGTGACCAGCACGGAGACGATCGACACGCCGG TCCCCCTCTACCCCACGTGTCTCGACGCCTGCGGCAACATGGTGGCCCTC GGCACTCGAGAGGGTCCAGTCCTTCTGTTCGACACTACCTACGGCGGCGG CGGTAGCGGCGGTGGTGGCGGCCGTAGCGGCGGCGGCGGCGGCGGCGGTA GCGATCGTTGTCGTGACGGAGTCCCGCCTGCTCTCGAAACGAACGCCATC GCGGTACGGTCGGTCATGACCCCTCGGGCAGCAGCAGCGGCCTTGGCCGG CAGCAGCAACAGAAGTGGGAGCACCGCCTCTGTGACGAGGGTGTACGGTT CGCTCGCCGACGGGACGGGGCCCACCACGGCCGTCCTGCTGGATAGAGCC AAGGTCATCGCCGCGGGCCGCGGGTCGCGGAGGAGCGGGGGTGGGTTTGT AATCAGGTGCGGCGTTCTTTTTATTTCGGCGTGCCTGCACAGGGCAGCAG CAGCGGGAGCAGAGAGAGACGAGGGCAACGGCATTCCAGGATGTATTGGT GTTTTTGCGGCGAGCTCTCGAGGCGAGTTTTGGCTTGCTGCGGACCGGTG CCGTCGTGCGCTGCGGTGTTTCTTCCGCTCGTACAGTCTTCGGTTGGTCG CAGTAGTTGTTATTTTCGGCGTTTCGAACGTGAGTGCTTCCCGTGTCCAA GTGACTTTTCCAACGTGTGTGTCATGCCGTGTGTTGGTGGCTGTTTGGCT CGAGATGCAACTACAACCGTGATATGTTAGGGAGGTATAATGTTGATTCC CTGGCCCTCTCTCACGATATGCACGCCATGCGGGTAGTACGAGACCGTCA GGTAGTATCGCCGTTCTGGCTGCGCTTGCTTGCAACTCCCGAAGGCTCTC GCGGCGGAAAGCTGAGCTTGTCAACAAGAACACATCGAACGTGTCCACTT GGAAGTATAGTAGTACTTTTTTTGCTTACTCGCTTTTCTTGCTGGCGAAC GTCTTTTATCAAGAAATGTCATGTAGAATGTGCCTAACTTGGAAGTAATT CCAGTTTTTGCTCAGCTCATTTTTGTCTGCCGGCTGCTGCTAAAAGGATT TACGCGGTGGACTCGACGAGGCTCTTGCGGACCCTCCGGTGCCTGAGCGA GGTGTCCCGCATGTCTCTCTTCGACCCCGTCCTCGCCGTCCTCTCGTCGG GCTCGGGCCGCTTGTCGTTCAGGGATCTATACGCGGACGGAGGCGGTGGT CTGGGCCAGGTGAAGTTCATGCGGTGGCGACCAAGCCACCTGTGCGTGTG TGTCCTGGTCTCACCTCGAGCTTGTGTTGTACCGCAACCGTTCGAGAACG ACACATTCGACGTTGAAAAATTACTTTTTTTTCGTGTTGATCAAGCCAAG CAACCCACTTCTGGCTACCTGCCGGCGTTTTGCGGCCGTTTGCCCGTTTT TCTATTCCATGCCCCTCCGAGGTTGGGATTTCTCGGTGTTCGGACGTGAT TGCTTTGGCTTTTGGGGTTACGGTTGTTGGTTGCAACACCCGCAGCGTTT CCGTATACAGCAGTACTACACCAATCCTATTAACAGTGTCAGGTAGCAGG CAAACATGTACCCATTTCGCCCCCCACAACGGACTCCTTTCCCTTCCCCT GCCCCCACCGTTGCTTCCGGCACAACGCGCCGAAACCTTCCGCACATGCA CACCTGCATGTGTGATGCGGCAGCGCACCGCGATGGGCGTCTCCGCCGCG GCATTCGCTGCCGTCGAGGGCCATCTCACCAACACCACCACCACCAACAA CAACAACGACAACAACAACGGCTGCAGCAACACGGGCGCCACCCGACCAG ACTACAACGGCGACGGCAGCACCGTCCTCCACTGCGTCAACTCGACCGGC ACCGTCTTCGAGGCGTCGACTAGCGGAGCGGCGTGGAACTCCGAGCTGAT CGCCCCGGGGGGCAGTGAGGGCGGAGCGGTTCCGGCGGCGGCTGCCGGGG GAGGATGGCACGTTTGTGCCGATCTTGAAGCGTCTCTCCTGGTGAGACAG AAAAATCGACACCTTATGCATCTCGAAGGCGTGTTGGGCCTGGAAGACCT TCTTCGGGCGTGTCGGGTTAAAACACCTCTTCGGTACAAGCGTTTTTTTT TTCTGTCGGCGCGCATATGTATCTGAGGTCAGGCAGACGATGAACCCTGC CCGGGGGTATGTAACCATTTTCGTCTTTTTCGAGAGGAGAATAATTCCGC CTATCTCCTTGTTAGCGCGATGGTCGAGCGCTTTTGATCCTAAAAGAAAG CTTGCGTGTTCTCTTTGGGTGTTTTTTCGTGTACGCGACGAGGTGACAGA TGCACGTCGTGTTCCTGTGCGTTGTTTTACGGCGTGTGGAGCACATTTTT CGGCAGTGGGGTGAGGGTTGGACATCACCTGTTTTCGGTCCGGGGACTTT GGTGCAACATTGTCGCAGAGCGTTCATCATGCAGCACGTACGCACACCGC GTACATAAGACTGATGCGCTTTCATTGGTCAGCAGGTCGTTCGACGACAA ATAGCGAAACACACACACACACAGGCTGTCGGGGGCGCCCGCTGACAAGA AGGCATGTTTTTTGTACTCGGCATTTTCATTGGTCAGCTTGCTGTCAAGC GGTATCGATCGATCATGTATTGTGCACACACACACGCACAGGACACTGTC GTCCAACTCCTGCCCCACCCCCCCCCCCTGTCGTCAGAACCCTTTGATTA GAAAGCATGTTCGCAATTTTTTACCCCGCTACAAGACTCATATATTTTCA TTGGTCAGCCGGTTAGCGCAGTCGATGCTATTAAACACACACATCACCAC CCGAGGGGACCTCCTGCACGCCAACTCAAGGTCATACCTTGAGACCACGC ACAGTGCACGCCCGGGTCCCTGCACAGGACTCGGCAAAGCACCAACCATC AACCCTTCCCCTCTTCCGAAATAGGTCCTTGCAACGCCGTGGGGCACAAT CTCCGGTTGGCGTCTACACCCCAGCGGGCGCCGCGCCCGCGGCCCGATCT TCTGCTTCGGACTGGGATCCTCCTGTTCGGCCTCCCCGTCGCCTTCCTCG CGCCCCCTGACCTCCATGAGCCTGACCGCCGGCGGTCTGATCCTCGCCAC CTCAGCCGAGGGCGCGCCCCCCCGGCTGTGGGACATGCGCCTGGCTCGGC GGCGGTGTGGGTGGGGGCTGGCCGCGGACGGTGGCGGTCCTTCCCAAGCA GGGGGAGCTCGAGCGTCAGGGCTGAGAGGCACCCCCGCGGGTGGAAGAGG AGGGGGCTCAGCAGCAGCGGCAGCGGCAGCAGCAGCAGCAGGAGGAGGAG CAGCAGTAGCGGCAGCAGCAGCAGCAGCAGCAAGAGGAGCAGCAGCAGCA GCAGCAGCAGCAGCAGGAGCAGCGGCAACGGGCAGCACTCGACAGGAGGG TAGCGCCGACGACGCCGACGGTCGTGGTGGACGTTTTAAAACGGGTAGGG CGCGGTGCGTCGGGGTTCGGCCGTGGCCGGTGGGGGCCTGGGCGGTCGGA GTCGCCGCGAACGCCGGGAGCGGGAGGCTGGTATCGGCGTGCTCCGACGG GCGCATGAGGTAATTCGAAATTATTTTTTCCCTTGTGTGTGTGATTTATG TTAGGGTCTTTTTTCAAGCACGTCGGTGTTGTTCATGTACAAGGCCAGAC ACGACCACAAGAACTCTATTTGTATATGCTTGGTACGAGTTATACCCCAA GATACGCCTGGTCTGTGTTGTCTAATGGCGGGAACCGATGAGGATTGGGG GTTCCGTTGCATTTTTCTTTGACGTCCGTTTCGTCGGCAGCGACGCCGCT TCAGCGTCGTGTCCGTCTTTGTGGGCGTAACCCCCACCCCCCCTTCCTCT TGGTGCATTCTCAGCGATTTCTTTGTAACTCGTCACCGGAGGAATTCATG CGCGTTTTATTAGTGATCACACGATTTTGGTGACCACGGACCGAGTATTT GCTAGATTTTGGGATTGGCAACTGACACGAGTTCAATGTGAAGACAACAA CAACAACAACAACAACAACAACAACGACAACAACTCAATCTTACACGGGA GCCAACCGTTTAAGGACAGTAGGTAACGTCGAGTCAACGCGAGCTGGCTT GCCCCGTGTGTGCAAACTTGGGAACGGGGGAGAAGCGTTGCGCACCCCCG GTTTTCCGACATCGCGGAGGAAAGGCGCCCATACCGTAATTTTGTTTCGC AACTTCAGGTTCCTTGTTCTTTGATTACAAGTACACATCAACACGAAGAG TAAGGGTGTGTGTTGAAAGCCTTTAGTCTTTGAGAGAGTGGGTGAGAAAC CCTGCTGGATGCTGGGCTTCCTTGTTTTGACTGTACGATTTATACATTTC CTCTAGATGGAAAGGCACCGCTTATGTCCCCGTGCGGTTTATATGTTGTT CTTTTTGGTTTAACCCATTGTGTGCAACCGCAGGATCACCCAGCTCCGGC CCAACAACGAGGAGCAGCGTTTACGCACCGCCGTGCTTGCAGCGCGCCAA GCCAAGCAGCAAGCCGCTGCGCGAAGCGGAGACGCGCCATGAAACGCCAC TGCCTACGCCCCCACCTTAGCGGTATCAAGGTCCCCATCCACTTGCTCCT TCTTGTTCGGGGAAGGCACCTCGGTCACCTGGTCCGCCTATGCATGCACA TGTAGCACCACCGATCGCTTGGTAGCGCCGCTAGATGTCGCCAATAGCGG GAAAGCTGCGACAGCTTGTGTCACTCGGCTGATTGTATGTTGGGTGCTAA GCGTGCGCGCTACGTATGCTCCATGGGTTGTCGGCGGGCGCCGTCTCTGA GATCAGCGCCGACGTTTCAAGCCTCGAGTCCACTCCGCCGCAGATGTCTG TGTTTGTTTCTAGGTGCAGAGGCGGATGGATGCCAGATCTTCAAAACTGA GGCACATACAAGAAGTTTTTGCGGGACATGTGCACATTTCTTTTGCGTTG AACGCCCGTGCAATAAAAGCTAGTTCGGGAAACGCCCTCAAGCGATACAT AGATGATTCGAGTCACAGAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5825:1201..8170+

>mRNA_Ecto-sp13_S_contig5825.16294.1 ID=mRNA_Ecto-sp13_S_contig5825.16294.1|Name=mRNA_Ecto-sp13_S_contig5825.16294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2199bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5825:1201..8170+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCCTGGACCCTCCCCATCGAGCAGTCTACCTCTTCATGTCGTCGT
CACATTGCTGCAGTTTGCTGTTCCTGAGGTAGTGTCGCTGGGCGAGGCCC
AACTCCTCTGCAAAGGGGCATCCTCGTCGCTCGCCTCCCCCGCCTTCTGG
CGGGGCATGACCGTCAACCTCACCCGCGACGAGGGATGCGAACTGCCGCT
AAACGCCCCCCGCCGCCCCCAGCATGACGAGAGTAGCCGCAAGGCCGCGG
AATCTTCTTCCTCCGCCTCATCGTTCTCCGGCGGACGCGCCTCGGCGCCC
AGGGCAACGGCAACAAGACCCAGGAGCAACGCTGATTGCCTTCTGGGCGG
CATCGGGGCAGGCGGCGTCTCGTCCCCGCCACCTGCCGGCTGCCATGGCG
GTGGTGCAAGCGGCGCCGGGACAAGGAAGAAAAGACGGGCGGCGGGGGCG
GAAAGAACGGCGGCGGGGTCGACAGCAAGACGGCAGTTCCTTCGGCGATA
CCACCACCACGTTGCGTTCCGACGCTTGACCCCTCCGGTGACCAGCACGG
AGACGATCGACACGCCGGTCCCCCTCTACCCCACGTGTCTCGACGCCTGC
GGCAACATGGTGGCCCTCGGCACTCGAGAGGGTCCAGTCCTTCTGTTCGA
CACTACCTACGGCGGCGGCGGTAGCGGCGGTGGTGGCGGCCGTAGCGGCG
GCGGCGGCGGCGGCGGTAGCGATCGTTGTCGTGACGGAGTCCCGCCTGCT
CTCGAAACGAACGCCATCGCGGTACGGTCGGTCATGACCCCTCGGGCAGC
AGCAGCGGCCTTGGCCGGCAGCAGCAACAGAAGTGGGAGCACCGCCTCTG
TGACGAGGGTGTACGGTTCGCTCGCCGACGGGACGGGGCCCACCACGGCC
GTCCTGCTGGATAGAGCCAAGGTCATCGCCGCGGGCCGCGGGTCGCGGAG
GAGCGGGGGTGGGTTTGTAATCAGGATTTACGCGGTGGACTCGACGAGGC
TCTTGCGGACCCTCCGGTGCCTGAGCGAGGTGTCCCGCATGTCTCTCTTC
GACCCCGTCCTCGCCGTCCTCTCGTCGGGCTCGGGCCGCTTGTCGTTCAG
GGATCTATACGCGGACGGAGGCGGTGGTCTGGGCCAGCGCACCGCGATGG
GCGTCTCCGCCGCGGCATTCGCTGCCGTCGAGGGCCATCTCACCAACACC
ACCACCACCAACAACAACAACGACAACAACAACGGCTGCAGCAACACGGG
CGCCACCCGACCAGACTACAACGGCGACGGCAGCACCGTCCTCCACTGCG
TCAACTCGACCGGCACCGTCTTCGAGGCGTCGACTAGCGGAGCGGCGTGG
AACTCCGAGCTGATCGCCCCGGGGGGCAGTGAGGGCGGAGCGGTTCCGGC
GGCGGCTGCCGGGGGAGGATGGCACGTTTGTGCCGATCTTGAAGCGTCTC
TCCTGGTCCTTGCAACGCCGTGGGGCACAATCTCCGGTTGGCGTCTACAC
CCCAGCGGGCGCCGCGCCCGCGGCCCGATCTTCTGCTTCGGACTGGGATC
CTCCTGTTCGGCCTCCCCGTCGCCTTCCTCGCGCCCCCTGACCTCCATGA
GCCTGACCGCCGGCGGTCTGATCCTCGCCACCTCAGCCGAGGGCGCGCCC
CCCCGGCTGTGGGACATGCGCCTGGCTCGGCGGCGGTGTGGGTGGGGGCT
GGCCGCGGACGGTGGCGGTCCTTCCCAAGCAGGGGGAGCTCGAGCGTCAG
GGCTGAGAGGCACCCCCGCGGGTGGAAGAGGAGGGGGCTCAGCAGCAGCG
GCAGCGGCAGCAGCAGCAGCAGGAGGAGGAGCAGCAGTAGCGGCAGCAGC
AGCAGCAGCAGCAAGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAG
CAGCGGCAACGGGCAGCACTCGACAGGAGGGTAGCGCCGACGACGCCGAC
GGTCGTGGTGGACGTTTTAAAACGGGTAGGGCGCGGTGCGTCGGGGTTCG
GCCGTGGCCGGTGGGGGCCTGGGCGGTCGGAGTCGCCGCGAACGCCGGGA
GCGGGAGGCTGGTATCGGCGTGCTCCGACGGGCGCATGAGGATCACCCAG
CTCCGGCCCAACAACGAGGAGCAGCGTTTACGCACCGCCGTGCTTGCAGC
GCGCCAAGCCAAGCAGCAAGCCGCTGCGCGAAGCGGAGACGCGCCATGA
back to top