mRNA_Ecto-sp13_S_contig58.16242.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58.16242.1
Unique NamemRNA_Ecto-sp13_S_contig58.16242.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58.16242.1 vs. uniprot
Match: D7G4Q4_ECTSI (Mtg2, mitochondrial Obg/CtgA-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q4_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.240e-24
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 3 
Query:  123 MFAHFSSRCKALGVLRVCHLGFGSQGCHASVSSVLVLNRQAGGRPGKRRKHRGDYKVL 296
            M AHFSSRC+ LGVLRVCHLGFGS GCHA VSSVLVLNRQAGGRPGKRR HRGDYK +
Sbjct:    1 MLAHFSSRCRVLGVLRVCHLGFGSPGCHAGVSSVLVLNRQAGGRPGKRRNHRGDYKFV 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58.16242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Q4_ECTSI3.240e-2486.21Mtg2, mitochondrial Obg/CtgA-like GTPase n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58contigEcto-sp13_S_contig58:22647..23577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score110.5
Seed ortholog evalue4.1e-22
Seed eggNOG ortholog2880.D7G4Q4
Preferred nameMTG2
Model size465
KEGG koko:K03979,ko:K10277,ko:K15334
Hectar predicted targeting categorymitochondrion
GOsGO:0000166,GO:0000313,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043576,GO:0043603,GO:0043604,GO:0044057,GO:0044065,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051246,GO:0060255,GO:0065007,GO:0070013,GO:0070129,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:0098798,GO:0140053,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
Exons3
EggNOG free text desc.GTP-binding protein
EggNOG OGsCOG0536@1,KOG1489@2759
EC1.14.11.27,2.1.1.202
Cds size273
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463803.8497403-UTR-Ecto-sp13_S_contig58:22646..227681681463803.8497403-UTR-Ecto-sp13_S_contig58:22646..22768Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58 22647..22768 +
1681463803.8868108-UTR-Ecto-sp13_S_contig58:23507..235771681463803.8868108-UTR-Ecto-sp13_S_contig58:23507..23577Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig58 23508..23577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463803.8630383-CDS-Ecto-sp13_S_contig58:22768..229361681463803.8630383-CDS-Ecto-sp13_S_contig58:22768..22936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58 22769..22936 +
1681463803.8733225-CDS-Ecto-sp13_S_contig58:23190..232951681463803.8733225-CDS-Ecto-sp13_S_contig58:23190..23295Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58 23191..23295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58.16242.1prot_Ecto-sp13_S_contig58.16242.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58 22769..23295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58.16242.1

>prot_Ecto-sp13_S_contig58.16242.1 ID=prot_Ecto-sp13_S_contig58.16242.1|Name=mRNA_Ecto-sp13_S_contig58.16242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MFAHFSSRCKALGVLRVCHLGFGSQGCHASVSSVLVLNRQAGGRPGKRRK
HRGDYKVLLWLQQRCWVPGAVVAEDVVRQSRLFAWYWRRD*
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mRNA from alignment at Ecto-sp13_S_contig58:22647..23577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58.16242.1 ID=mRNA_Ecto-sp13_S_contig58.16242.1|Name=mRNA_Ecto-sp13_S_contig58.16242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=931bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58:22647..23577+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACACACGCGCAGTCTCTTTACTCTCACAGTCCGGTGGTCGTCCAGCCCA
GGTTGTTTCACTCGCTCGTGCAGCACACTGCACACTGCACACTGACACTG
CACACGCGACATCGTGTCACTGATGTTCGCTCATTTTTCATCCCGATGCA
AAGCATTGGGAGTGCTACGGGTGTGCCATCTTGGCTTCGGCAGCCAAGGA
TGCCATGCCAGTGTTAGTTCTGTGTTGGTGTTGAACAGACAAGCTGGAGG
AAGGCCTGGAAAACGACGGAAACACAGGGGTGACTACAAGGCAAGTTCGT
TGCTCGCCATAGAGCCACACAGGCAAGGTTAATATATATGTACAATAGTG
CAAAGTCGTGAAATCTCCCGTTACGCCGCGGCACTCTCACGTGCCTGGTT
GTTCACAATGCCGTTGGCACTCCTTGCCTCCTGTAAAAGCAAGAAAATGA
ACAACAGGAGTGAACGCTGAAGTTTCAAATGTTCAAACGCTCCTCATTCT
CATGACAAGCTACGTGTGCATGTTTCTATGCTATCGTACCACAGGTTCTG
CTGTGGTTACAGCAGCGGTGTTGGGTACCGGGTGCTGTTGTTGCTGAAGA
TGTAGTCCGACAATCACGCCTCTTCGCCTGGTACTGGAGGCGTGATTAAA
GGAAAGTCGGTACCCAGACATGCCACGTTGTTTGTGGAGTGCTTTGCATC
CGGGCTTATCTGGGCGTATGATTCGATCGTCACGCCCAGCAATGGGAGCT
CACCACTACCATGGACATATCATACTCTATAAATAGTGCTGTACCTCACC
GCTTGTCTCCGTCGCGTCCGGACGTCCCGGCCCCGTCGTAATGCAACGCC
ATTGTTTTTTCAGTTCGTCGACAAACTTCGCATAGTGGCCAGTGGAGGCA
AGGGAGGAGACGGATGCATCAGCCTCGAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58:22647..23577+

>mRNA_Ecto-sp13_S_contig58.16242.1 ID=mRNA_Ecto-sp13_S_contig58.16242.1|Name=mRNA_Ecto-sp13_S_contig58.16242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58:22647..23577+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGCTCATTTTTCATCCCGATGCAAAGCATTGGGAGTGCTACGGGT
GTGCCATCTTGGCTTCGGCAGCCAAGGATGCCATGCCAGTGTTAGTTCTG
TGTTGGTGTTGAACAGACAAGCTGGAGGAAGGCCTGGAAAACGACGGAAA
CACAGGGGTGACTACAAGGTTCTGCTGTGGTTACAGCAGCGGTGTTGGGT
ACCGGGTGCTGTTGTTGCTGAAGATGTAGTCCGACAATCACGCCTCTTCG
CCTGGTACTGGAGGCGTGATTAA
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