mRNA_Ecto-sp13_S_contig57389.16147.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57389.16147.1
Unique NamemRNA_Ecto-sp13_S_contig57389.16147.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5KBS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS7_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.120e-34
Identity = 93/213 (43.66%), Postives = 108/213 (50.70%), Query Frame = 1
Query:   37 QQPAASPAPSTTAGHVDENRPAAPSTAVGVWGIASATAAAVVCDTSRRQXXXXXXQQRWSRGGPVASSRRVDSSGLKRWSHSRCLGTRGSQGACAQAGXXXXXXXXXVCSSGGDDGICGFDKGAPYPFDPRGLLNQ*VTKTR------VVRRSTGAXXXXXXXXXXXXXXXXALSHPFYRGKRSRWRRATSGVVVGVDLPFDRGRDAWAHARG 657
            QQPAAS  PS TA H DE RPAAPS+ VG+ G ASA A A     S R           S    VA++        +  +      T GS+  CA +G          CSSGGDDGI GF++GA YPFDP GL  Q V +           RS+G                 A +HPF RGKR  WRRAT G V+G DLPFDRG+DAWAHA G
Sbjct:    5 QQPAASLVPSPTANHADEIRPAAPSSTVGICGTASAPAVATA--VSARAAAAGVPPHGASTA--VAATETAAVGTAEAAASPVAALTPGSRDTCADSGGL-------TCSSGGDDGIYGFERGASYPFDPGGLFAQEVREEGDHISGGKEDRSSGGRSSSSGDSGDGAAWHGASTHPFDRGKRFPWRRATRGPVLGADLPFDRGKDAWAHAGG 206          
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5KAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.560e-29
Identity = 94/211 (44.55%), Postives = 105/211 (49.76%), Query Frame = 1
Query:   43 PAASPAPSTTAGHVDENRPAAPSTAVGVWGIASATAAAVVCDTSRRQXXXXXXQQRWSRGGPVASSRRVDSSGLKRWSHSRCLGTRGSQGACAQAGXXXXXXXXXVCSSGGDDGICGFDKGAPYPFDPRGLLNQ*VTKTRVVR------RSTGAXXXXXXXXXXXXXXXXALSHPFYRGKRSRWRRATSGVVVGVDLPFDRGRDAWAHARG 657
            PAAS  PS TA H DE RPAAPS+ VG+ G ASA A A                   +    VA             +        GSQ  CA +G           SSGGDD I GF++GA YPFDP GL  Q V +           RS+  XXXXX           A +HPF RGKRSRWRRAT G V+GVDLPFDRGRDAWAHA G
Sbjct:  243 PAASLVPSPTANHADEIRPAAPSSTVGICGTASAPAVATAASVRAAVAGVTPHGATTA----VAXXXXXXXXXXXXXASPVAALAPGSQDTCADSGGL-------TYSSGGDDDIYGFERGASYPFDPGGLFAQEVREEGDHNSGGKEDRSSXXXXXXXGDGGDGAAWHEASTHPFDRGKRSRWRRATRGAVLGVDLPFDRGRDAWAHAGG 442          
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5K2V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.020e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = -3
Query:  531 LGAKHHPRACAHASLPRSNGRSTPTTTPLVALLHRDRFPL*KGCDRAP 674
            LGAKHHP ACAHASL RSNGRSTP+T PLVALLHRDRFPL K C  AP
Sbjct:   65 LGAKHHPPACAHASLRRSNGRSTPSTGPLVALLHRDRFPLSKECVDAP 112          
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5JDR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR3_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.870e-13
Identity = 48/108 (44.44%), Postives = 55/108 (50.93%), Query Frame = 1
Query:  304 SQGACAQAGXXXXXXXXXVCSSGGDDGICGFDKGAPYPFDPRGLLNQ*VTKTRVVR------RSTGAXXXXXXXXXXXXXXXXALSHPFYRGKRSRWRRATSGVVVGV 609
            SQ  CA +G          CSSGGDDGI GF++GA YPFDP  L  Q V +           RS+GA                A +HPF RGK SRWRRAT G V+GV
Sbjct:   87 SQDTCADSGGL-------TCSSGGDDGIYGFNRGASYPFDPGELFAQEVREEGDYNSGGKEDRSSGARSSSSGDGGDGAAWHGASTHPFDRGKLSRWRRATRGPVLGV 187          
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5KT46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT46_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 9.890e-13
Identity = 58/140 (41.43%), Postives = 66/140 (47.14%), Query Frame = 2
Query:  299 GAAKVHAPRRAVAAXXXXXXXXXXXETTVSAVSTRARRTLLTREDY*ISR*PKQGW*GGAPEQ--------------RWPRQRAAEAEAAEAALYRTPFIEGSGPDGGERPVGSW*EWTSRSIGAEMHGHMPGGDASHRA 676
            GAAKVH+P    AA           E T S VS  ARRTLLTR+D+   R  +                        RW R    E ++        P  E SGP GGE+P     EWTSRSI  EMHGHMPGGDASH+A
Sbjct:   35 GAAKVHSP----AAAATVARPAAAVEMTASTVSRGARRTLLTRKDFLRRRCVRXXXXXXXXXXXXXXXXXXXXXXXXRW-RSLGGERQSI-------PLTERSGPGGGEQPGRPCWEWTSRSIEVEMHGHMPGGDASHQA 162          
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5JL81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL81_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.700e-10
Identity = 50/111 (45.05%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  121 GVWGIASAT-AAAVVCDTSRRQXXXXXXQQRWSRGGPVASSRRVDSSGLKRWSHSRCLGTRGSQGACAQAGXXXXXXXXXVCSSGGDDGICGFDKGAPYPFDPRGLLNQ*V 450
            G    A+AT AAAV C+    +              PV SSRRV+SSG+K+WS  +CLG  GSQ  CA AG          CSS GDDGI GF++GA +P  P GL  Q V
Sbjct:   74 GATATAAATDAAAVGCEEQSEEVARATEAAVLVLEEPVVSSRRVESSGVKQWSLFQCLGRGGSQ--CAFAGSGGGQ----TCSSCGDDGIYGFERGASFPCGPGGLFAQEV 178          
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5L9I6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 9.020e-8
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 2
Query:  548 PFIEGSGPDGGERPVGSW*EWTSRSIGAEMHGHMPGGDASHRAA 679
            PF  G    GGERP G   EWTSRSI  EMHGH+PGGDASH+AA
Sbjct:  447 PFDRGKRSRGGERPRGPCWEWTSRSIEVEMHGHVPGGDASHQAA 490          
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5JLH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.070e-5
Identity = 52/169 (30.77%), Postives = 65/169 (38.46%), Query Frame = 1
Query:   43 PAASPAPSTTAGHVDENRPAAPSTAVGVWGIASATAAAVVCDTSRRQXXXXXXQQRWSRGGPVASSRRVDSSGLKRWSHSRCLGTRG---------------------------------SQGACAQAGXXXXXXXXXVCSSGGDDGICGFDKGAPYPFDPRGLLNQ*V 450
            PAAS  PSTTA HVD+ RPA+PS+ +G+ G ASA AAA                      G   +    ++  +                                              SQ  CA +G          CSSGGDDGI GF++GA YPFDP G+  Q V
Sbjct:  266 PAASLVPSTTANHVDKIRPASPSSTIGICGTASAPAAAXXXXXXXAAAGLTPH-------GATTAVAATETGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQDTCADSGGL-------TCSSGGDDGIYGFERGASYPFDPGGIFAQEV 420          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KBS7_9PHAE1.120e-3443.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAU0_9PHAE1.560e-2944.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2V8_9PHAE8.020e-1683.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDR3_9PHAE2.870e-1344.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT46_9PHAE9.890e-1341.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL81_9PHAE2.700e-1045.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9I6_9PHAE9.020e-868.18CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JLH1_9PHAE1.070e-530.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57389contigEcto-sp13_S_contig57389:2..770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size771
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463795.0698004-UTR-Ecto-sp13_S_contig57389:1..3231681463795.0698004-UTR-Ecto-sp13_S_contig57389:1..323Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig57389 2..323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463795.0882158-CDS-Ecto-sp13_S_contig57389:323..7701681463795.0882158-CDS-Ecto-sp13_S_contig57389:323..770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57389 324..770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57389.16147.1prot_Ecto-sp13_S_contig57389.16147.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57389 324..770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57389.16147.1

>prot_Ecto-sp13_S_contig57389.16147.1 ID=prot_Ecto-sp13_S_contig57389.16147.1|Name=mRNA_Ecto-sp13_S_contig57389.16147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
AESQQPQQSLEKQQPAASPAPSTTAGHVDENRPAAPSTAVGVWGIASATA
AAVVCDTSRRQRQERRKQQRWSRGGPVASSRRVDSSGLKRWSHSRCLGTR
GSQGACAQAGGGGGGGGGRVCSSGGDDGICGFDKGAPYPFDPRGLLNQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig57389:2..770-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57389.16147.1 ID=mRNA_Ecto-sp13_S_contig57389.16147.1|Name=mRNA_Ecto-sp13_S_contig57389.16147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=769bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57389:2..770- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAATCGCAACAACCCCAGCAGTCGTTGGAGAAGCAGCAACCAGCAGC ATCGCCTGCGCCATCAACAACAGCAGGCCATGTCGATGAGAACCGTCCTG CTGCCCCGTCTACGGCGGTTGGGGTCTGGGGAATTGCGTCTGCAACGGCG GCGGCGGTTGTGTGTGACACCAGTCGGAGGCAGCGGCAAGAGCGACGGAA GCAGCAGCGTTGGTCTCGGGGGGGGCCTGTCGCAAGCAGCAGGAGAGTCG ACAGCAGCGGCTTGAAGAGGTGGAGCCACTCCCGATGCTTGGGCACGAGG GGCAGCCAAGGTGCATGCGCCCAGGCGGGCGGTGGCGGCGGCGGCGGCGG CGGCCGGGTCTGCAGCAGCGGGGGAGACGACGGTATCTGCGGTTTCGACA AGGGCGCGCCGTACCCTTTTGACCCGAGAGGATTATTAAATCAGTAGGTA ACCAAAACAAGGGTGGTGAGGAGGAGCACCGGAGCAGCGGTGGCCGCGGC AACGGGCGGCGGAGGCGGAAGCGGCGGAGGCGGCGCTCTATCGCACCCCT TTTATAGAGGGAAGCGGTCCCGATGGAGGAGAGCGACCAGTGGGGTCGTG GTAGGAGTGGACCTCCCGTTCGATCGGGGCAGAGATGCATGGGCACATGC CCGGGGGTGATGCTTCGCACCGAGCGGCCACGTCAGCGGCAGCGACAGCA GCGGCAGCTTCGGCCAGAGCCCCGTCGGAGGGCGTGGCGCAAGTAGCAGC GGCGACGTCAGCGCGAGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57389:2..770-

>mRNA_Ecto-sp13_S_contig57389.16147.1 ID=mRNA_Ecto-sp13_S_contig57389.16147.1|Name=mRNA_Ecto-sp13_S_contig57389.16147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57389:2..770- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAATCGCAACAACCCCAGCAGTCGTTGGAGAAGCAGCAACCAGCAGC
ATCGCCTGCGCCATCAACAACAGCAGGCCATGTCGATGAGAACCGTCCTG
CTGCCCCGTCTACGGCGGTTGGGGTCTGGGGAATTGCGTCTGCAACGGCG
GCGGCGGTTGTGTGTGACACCAGTCGGAGGCAGCGGCAAGAGCGACGGAA
GCAGCAGCGTTGGTCTCGGGGGGGGCCTGTCGCAAGCAGCAGGAGAGTCG
ACAGCAGCGGCTTGAAGAGGTGGAGCCACTCCCGATGCTTGGGCACGAGG
GGCAGCCAAGGTGCATGCGCCCAGGCGGGCGGTGGCGGCGGCGGCGGCGG
CGGCCGGGTCTGCAGCAGCGGGGGAGACGACGGTATCTGCGGTTTCGACA
AGGGCGCGCCGTACCCTTTTGACCCGAGAGGATTATTAAATCAGTAG
back to top