mRNA_Ecto-sp13_S_contig57389.16147.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5KBS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS7_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.120e-34 Identity = 93/213 (43.66%), Postives = 108/213 (50.70%), Query Frame = 1
Query: 37 QQPAASPAPSTTAGHVDENRPAAPSTAVGVWGIASATAAAVVCDTSRRQXXXXXXQQRWSRGGPVASSRRVDSSGLKRWSHSRCLGTRGSQGACAQAGXXXXXXXXXVCSSGGDDGICGFDKGAPYPFDPRGLLNQ*VTKTR------VVRRSTGAXXXXXXXXXXXXXXXXALSHPFYRGKRSRWRRATSGVVVGVDLPFDRGRDAWAHARG 657
QQPAAS PS TA H DE RPAAPS+ VG+ G ASA A A S R S VA++ + + T GS+ CA +G CSSGGDDGI GF++GA YPFDP GL Q V + RS+G A +HPF RGKR WRRAT G V+G DLPFDRG+DAWAHA G
Sbjct: 5 QQPAASLVPSPTANHADEIRPAAPSSTVGICGTASAPAVATA--VSARAAAAGVPPHGASTA--VAATETAAVGTAEAAASPVAALTPGSRDTCADSGGL-------TCSSGGDDGIYGFERGASYPFDPGGLFAQEVREEGDHISGGKEDRSSGGRSSSSGDSGDGAAWHGASTHPFDRGKRFPWRRATRGPVLGADLPFDRGKDAWAHAGG 206
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5KAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU0_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.560e-29 Identity = 94/211 (44.55%), Postives = 105/211 (49.76%), Query Frame = 1
Query: 43 PAASPAPSTTAGHVDENRPAAPSTAVGVWGIASATAAAVVCDTSRRQXXXXXXQQRWSRGGPVASSRRVDSSGLKRWSHSRCLGTRGSQGACAQAGXXXXXXXXXVCSSGGDDGICGFDKGAPYPFDPRGLLNQ*VTKTRVVR------RSTGAXXXXXXXXXXXXXXXXALSHPFYRGKRSRWRRATSGVVVGVDLPFDRGRDAWAHARG 657
PAAS PS TA H DE RPAAPS+ VG+ G ASA A A + VA + GSQ CA +G SSGGDD I GF++GA YPFDP GL Q V + RS+ XXXXX A +HPF RGKRSRWRRAT G V+GVDLPFDRGRDAWAHA G
Sbjct: 243 PAASLVPSPTANHADEIRPAAPSSTVGICGTASAPAVATAASVRAAVAGVTPHGATTA----VAXXXXXXXXXXXXXASPVAALAPGSQDTCADSGGL-------TYSSGGDDDIYGFERGASYPFDPGGLFAQEVREEGDHNSGGKEDRSSXXXXXXXGDGGDGAAWHEASTHPFDRGKRSRWRRATRGAVLGVDLPFDRGRDAWAHAGG 442
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5K2V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V8_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 8.020e-16 Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = -3
Query: 531 LGAKHHPRACAHASLPRSNGRSTPTTTPLVALLHRDRFPL*KGCDRAP 674
LGAKHHP ACAHASL RSNGRSTP+T PLVALLHRDRFPL K C AP
Sbjct: 65 LGAKHHPPACAHASLRRSNGRSTPSTGPLVALLHRDRFPLSKECVDAP 112
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5JDR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR3_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 2.870e-13 Identity = 48/108 (44.44%), Postives = 55/108 (50.93%), Query Frame = 1
Query: 304 SQGACAQAGXXXXXXXXXVCSSGGDDGICGFDKGAPYPFDPRGLLNQ*VTKTRVVR------RSTGAXXXXXXXXXXXXXXXXALSHPFYRGKRSRWRRATSGVVVGV 609
SQ CA +G CSSGGDDGI GF++GA YPFDP L Q V + RS+GA A +HPF RGK SRWRRAT G V+GV
Sbjct: 87 SQDTCADSGGL-------TCSSGGDDGIYGFNRGASYPFDPGELFAQEVREEGDYNSGGKEDRSSGARSSSSGDGGDGAAWHGASTHPFDRGKLSRWRRATRGPVLGV 187
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5KT46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT46_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 9.890e-13 Identity = 58/140 (41.43%), Postives = 66/140 (47.14%), Query Frame = 2
Query: 299 GAAKVHAPRRAVAAXXXXXXXXXXXETTVSAVSTRARRTLLTREDY*ISR*PKQGW*GGAPEQ--------------RWPRQRAAEAEAAEAALYRTPFIEGSGPDGGERPVGSW*EWTSRSIGAEMHGHMPGGDASHRA 676
GAAKVH+P AA E T S VS ARRTLLTR+D+ R + RW R E ++ P E SGP GGE+P EWTSRSI EMHGHMPGGDASH+A
Sbjct: 35 GAAKVHSP----AAAATVARPAAAVEMTASTVSRGARRTLLTRKDFLRRRCVRXXXXXXXXXXXXXXXXXXXXXXXXRW-RSLGGERQSI-------PLTERSGPGGGEQPGRPCWEWTSRSIEVEMHGHMPGGDASHQA 162
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5JL81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL81_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 2.700e-10 Identity = 50/111 (45.05%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 121 GVWGIASAT-AAAVVCDTSRRQXXXXXXQQRWSRGGPVASSRRVDSSGLKRWSHSRCLGTRGSQGACAQAGXXXXXXXXXVCSSGGDDGICGFDKGAPYPFDPRGLLNQ*V 450
G A+AT AAAV C+ + PV SSRRV+SSG+K+WS +CLG GSQ CA AG CSS GDDGI GF++GA +P P GL Q V
Sbjct: 74 GATATAAATDAAAVGCEEQSEEVARATEAAVLVLEEPVVSSRRVESSGVKQWSLFQCLGRGGSQ--CAFAGSGGGQ----TCSSCGDDGIYGFERGASFPCGPGGLFAQEV 178
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5L9I6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I6_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 9.020e-8 Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 2
Query: 548 PFIEGSGPDGGERPVGSW*EWTSRSIGAEMHGHMPGGDASHRAA 679
PF G GGERP G EWTSRSI EMHGH+PGGDASH+AA
Sbjct: 447 PFDRGKRSRGGERPRGPCWEWTSRSIEVEMHGHVPGGDASHQAA 490
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Match: A0A6H5JLH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH1_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 1.070e-5 Identity = 52/169 (30.77%), Postives = 65/169 (38.46%), Query Frame = 1
Query: 43 PAASPAPSTTAGHVDENRPAAPSTAVGVWGIASATAAAVVCDTSRRQXXXXXXQQRWSRGGPVASSRRVDSSGLKRWSHSRCLGTRG---------------------------------SQGACAQAGXXXXXXXXXVCSSGGDDGICGFDKGAPYPFDPRGLLNQ*V 450
PAAS PSTTA HVD+ RPA+PS+ +G+ G ASA AAA G + ++ + SQ CA +G CSSGGDDGI GF++GA YPFDP G+ Q V
Sbjct: 266 PAASLVPSTTANHVDKIRPASPSSTIGICGTASAPAAAXXXXXXXAAAGLTPH-------GATTAVAATETGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQDTCADSGGL-------TCSSGGDDGIYGFERGASYPFDPGGIFAQEV 420 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57389.16147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig57389.16147.1 >prot_Ecto-sp13_S_contig57389.16147.1 ID=prot_Ecto-sp13_S_contig57389.16147.1|Name=mRNA_Ecto-sp13_S_contig57389.16147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp AESQQPQQSLEKQQPAASPAPSTTAGHVDENRPAAPSTAVGVWGIASATAback to top mRNA from alignment at Ecto-sp13_S_contig57389:2..770- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig57389.16147.1 ID=mRNA_Ecto-sp13_S_contig57389.16147.1|Name=mRNA_Ecto-sp13_S_contig57389.16147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=769bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57389:2..770- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57389:2..770- >mRNA_Ecto-sp13_S_contig57389.16147.1 ID=mRNA_Ecto-sp13_S_contig57389.16147.1|Name=mRNA_Ecto-sp13_S_contig57389.16147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57389:2..770- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |