mRNA_Ecto-sp13_S_contig56654.16026.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56654.16026.1
Unique NamemRNA_Ecto-sp13_S_contig56654.16026.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56654.16026.1 vs. uniprot
Match: A0A6H5KB14_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB14_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.880e-8
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   10 LVQGYEGLLQRPICVDRIAEALLNGVDSADGRGRGVPLKIR 132
            ++ GYEGLL+RP+CVD  A+ALLNG DSADG G+G+P   R
Sbjct:   82 ILPGYEGLLRRPMCVDVTAQALLNGADSADGGGKGIPFLDR 122
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BLAST of mRNA_Ecto-sp13_S_contig56654.16026.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.050e-7
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   10 LVQGYEGLLQRPICVDRIAEALLNGVDSADGRGRGVPLKIRCRG 141
            ++ GYEGLL+RP+ VDR AE LLNG + ADG GRGVP+K+R  G
Sbjct:   60 ILPGYEGLLRRPMRVDRTAEDLLNGGEGADGGGRGVPVKVRGNG 103
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BLAST of mRNA_Ecto-sp13_S_contig56654.16026.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.120e-7
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  241 GIHQRSGVLAGDCL--TDFTPTFFGLTSFFMFQSYFYLAENT*LSQFVKALGTEI 399
            G+ +   V+A   L  TDFTPT  GL+SFFMFQSYF LA+N    QFVKALGTE+
Sbjct:  354 GLQRCLPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGTEL 408
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BLAST of mRNA_Ecto-sp13_S_contig56654.16026.1 vs. uniprot
Match: D8LFN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN7_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.260e-7
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   10 LVQGYEGLLQRPICVDRIAEALLNGVDSADGRGRGVP 120
            ++ GYEGL++RPI V R AEA LNGVDSADG GRG P
Sbjct:   64 ILSGYEGLVRRPIRVGRTAEAFLNGVDSADGGGRGYP 100
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BLAST of mRNA_Ecto-sp13_S_contig56654.16026.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.730e-6
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  277 CLTDFTPTFFGLTSFFMFQSYFYLAENT*LSQFVKALG 390
            C TDFTPTFFG TSFFMFQSYF   +N    +F+KALG
Sbjct:  585 CGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALG 622
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BLAST of mRNA_Ecto-sp13_S_contig56654.16026.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.880e-6
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  277 CLTDFTPTFFGLTSFFMFQSYFYLAENT*LSQFVKALG 390
            C TDFTPTFFG TSFFMFQSYF   +N    +F+KALG
Sbjct: 1079 CGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALG 1116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56654.16026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KB14_9PHAE1.880e-863.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIG7_9PHAE1.050e-763.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ3_9PHAE1.120e-760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFN7_ECTSI3.260e-770.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBA3_9PHAE4.730e-668.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE4.880e-668.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56654contigEcto-sp13_S_contig56654:402..823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size422
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001430.1
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463784.7242656-CDS-Ecto-sp13_S_contig56654:401..7641681463784.7242656-CDS-Ecto-sp13_S_contig56654:401..764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56654 402..764 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463784.7373593-UTR-Ecto-sp13_S_contig56654:764..8231681463784.7373593-UTR-Ecto-sp13_S_contig56654:764..823Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig56654 765..823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56654.16026.1prot_Ecto-sp13_S_contig56654.16026.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56654 402..764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56654.16026.1

>prot_Ecto-sp13_S_contig56654.16026.1 ID=prot_Ecto-sp13_S_contig56654.16026.1|Name=mRNA_Ecto-sp13_S_contig56654.16026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
SGRLVQGYEGLLQRPICVDRIAEALLNGVDSADGRGRGVPLKIRCRGGGF
SCRVQHPLTKRWGCLCRCVYSHPCGHCTRRGIHQRSGVLAGDCLTDFTPT
FFGLTSFFMFQSYFYLAENT*
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mRNA from alignment at Ecto-sp13_S_contig56654:402..823+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56654.16026.1 ID=mRNA_Ecto-sp13_S_contig56654.16026.1|Name=mRNA_Ecto-sp13_S_contig56654.16026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=422bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56654:402..823+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGGTCGTTTGGTTCAGGGTTACGAGGGCTTGTTGCAGCGACCCATATG
CGTGGACAGAATAGCAGAAGCCCTCCTCAACGGGGTGGACAGTGCGGACG
GTAGGGGCAGGGGGGTACCCCTAAAGATCCGCTGTCGCGGCGGGGGGTTT
TCGTGCCGAGTGCAACACCCCTTGACGAAGCGCTGGGGCTGTCTATGTCG
GTGCGTGTATAGTCATCCGTGCGGCCATTGTACACGTCGAGGAATTCATC
AGCGGTCCGGAGTACTTGCCGGTGATTGCCTCACTGACTTCACTCCAACG
TTTTTTGGACTGACATCTTTTTTCATGTTCCAGTCGTACTTTTACCTGGC
GGAAAATACCTAACTTAGCCAGTTCGTCAAGGCCCTGGGCACCGAAATAA
CGTAGGTTGCATAAGATACCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56654:402..823+

>mRNA_Ecto-sp13_S_contig56654.16026.1 ID=mRNA_Ecto-sp13_S_contig56654.16026.1|Name=mRNA_Ecto-sp13_S_contig56654.16026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56654:402..823+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGGTCGTTTGGTTCAGGGTTACGAGGGCTTGTTGCAGCGACCCATATG
CGTGGACAGAATAGCAGAAGCCCTCCTCAACGGGGTGGACAGTGCGGACG
GTAGGGGCAGGGGGGTACCCCTAAAGATCCGCTGTCGCGGCGGGGGGTTT
TCGTGCCGAGTGCAACACCCCTTGACGAAGCGCTGGGGCTGTCTATGTCG
GTGCGTGTATAGTCATCCGTGCGGCCATTGTACACGTCGAGGAATTCATC
AGCGGTCCGGAGTACTTGCCGGTGATTGCCTCACTGACTTCACTCCAACG
TTTTTTGGACTGACATCTTTTTTCATGTTCCAGTCGTACTTTTACCTGGC
GGAAAATACCTAA
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