mRNA_Ecto-sp13_S_contig5636.15976.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5636.15976.1
Unique NamemRNA_Ecto-sp13_S_contig5636.15976.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5636.15976.1 vs. uniprot
Match: D7FJ40_ECTSI (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ40_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 4.010e-126
Identity = 179/183 (97.81%), Postives = 183/183 (100.00%), Query Frame = 1 
Query:    1 MSTSAKVWIDQNTRVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTVSEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALKQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI 549
            MS+SAKVWIDQNT+VIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTV+EAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHAL+QQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI
Sbjct:   21 MSSSAKVWIDQNTKVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTVAEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALRQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI 203
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5636.15976.1 vs. uniprot
Match: A0A7S1DBS3_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBS3_CYCTE)

HSP 1 Score: 310 bits (794), Expect = 2.300e-105
Identity = 150/183 (81.97%), Postives = 165/183 (90.16%), Query Frame = 1 
Query:    1 MSTSAKVWIDQNTRVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTVSEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALKQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI 549
            MS +AKVWID++TRVI QGFTGKQGTFH+EQAIEYG+  VGGVTPKKGGQTHLG PVFNTV EA + VKPDASVVYVPPPF   A+LDA+E EIPLV+ ITEGIPQ+DMAKVK+AL+ Q+ TRLIGPNCPGIIKPGECKIGIMPGYIHK GKIGIVSRSGTLTYEAV+QTT  G+GQSTCVGI
Sbjct:   20 MSANAKVWIDKDTRVICQGFTGKQGTFHSEQAIEYGTNMVGGVTPKKGGQTHLGLPVFNTVQEAVDEVKPDASVVYVPPPFCANAILDAVEAEIPLVIAITEGIPQQDMAKVKYALRSQSVTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVYQTTTAGLGQSTCVGI 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5636.15976.1 vs. uniprot
Match: A0A7R9ZLR7_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLR7_9STRA)

HSP 1 Score: 313 bits (803), Expect = 3.200e-105
Identity = 151/183 (82.51%), Postives = 167/183 (91.26%), Query Frame = 1 
Query:    1 MSTSAKVWIDQNTRVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTVSEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALKQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI 549
            MS++AKVWID++TRVI QGFTGKQGTFH+EQAIEYG+  VGGVTPKKGGQTHLG PVFNTV EAK  VKPDASV+YVPPPF   A++DAIE EIPLVV ITEG+PQ++MA+VKHAL  QTATRLIGPNCPGIIKPGECKIGIMPGYIH+KGKIG+VSRSGTLTYEAV QTTV G+GQSTCVGI
Sbjct:   23 MSSTAKVWIDKDTRVICQGFTGKQGTFHSEQAIEYGTNMVGGVTPKKGGQTHLGLPVFNTVEEAKTEVKPDASVIYVPPPFCAQAIMDAIEAEIPLVVAITEGVPQQEMARVKHALNTQTATRLIGPNCPGIIKPGECKIGIMPGYIHQKGKIGVVSRSGTLTYEAVHQTTVAGLGQSTCVGI 205
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5636.15976.1 vs. uniprot
Match: B7G0K7_PHATC (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0K7_PHATC)

HSP 1 Score: 312 bits (799), Expect = 7.150e-105
Identity = 148/183 (80.87%), Postives = 167/183 (91.26%), Query Frame = 1 
Query:    1 MSTSAKVWIDQNTRVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTVSEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALKQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI 549
            MS++AKVW+D+N+RVI QGFTGKQGTFH+ QAI+YG+  VGGVTPKKGGQ HLG PVFNTV EA +GV+PDASV+YVPPP+A  A+LDAIE EI LVVCITEGIPQ+DMA+VKHAL+ Q  TRLIGPNCPGIIKPGECKIGIMPGYIH+ GKIG+VSRSGTLTYEAVWQTTVTG+GQSTCVGI
Sbjct:    1 MSSTAKVWVDKNSRVICQGFTGKQGTFHSTQAIDYGTNMVGGVTPKKGGQEHLGLPVFNTVQEAVDGVQPDASVIYVPPPYAAQAILDAIEAEIGLVVCITEGIPQQDMARVKHALRLQDRTRLIGPNCPGIIKPGECKIGIMPGYIHRPGKIGVVSRSGTLTYEAVWQTTVTGLGQSTCVGI 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5636.15976.1 vs. uniprot
Match: A0A7S0AIP9_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A7S0AIP9_9STRA)

HSP 1 Score: 312 bits (799), Expect = 1.860e-104
Identity = 149/183 (81.42%), Postives = 167/183 (91.26%), Query Frame = 1 
Query:    1 MSTSAKVWIDQNTRVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTVSEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALKQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI 549
            MS++A VW+D+NT+VI QGFTGKQGTFH+ QAIEYG+  VGGVTPKKGGQTHLG PVFNTV+EA +GV+PDASV+YVPPPF  AA++DAIENEIPLVV ITEG+PQ+DMAKVK AL  Q+ATRLIGPNCPGIIKPGECKIGIMPGYIH  GKIG+VSRSGTLTYEAV QTTVTG+GQSTCVGI
Sbjct:   38 MSSTANVWVDKNTKVICQGFTGKQGTFHSTQAIEYGTNMVGGVTPKKGGQTHLGLPVFNTVAEAVDGVQPDASVIYVPPPFCAAAIMDAIENEIPLVVAITEGVPQQDMAKVKKALSMQSATRLIGPNCPGIIKPGECKIGIMPGYIHTPGKIGVVSRSGTLTYEAVHQTTVTGLGQSTCVGI 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5636.15976.1 vs. uniprot
Match: A0A7S2LEI1_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LEI1_9STRA)

HSP 1 Score: 305 bits (780), Expect = 9.330e-102
Identity = 147/183 (80.33%), Postives = 162/183 (88.52%), Query Frame = 1 
Query:    1 MSTSAKVWIDQNTRVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTVSEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALKQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI 549
            MS +AKVWID++TRVI QGFTGKQGTFH+EQAI YG+Q VGGVTPKKGGQ HLG PVFNTV+EA EGV+PDASV+YVPPPF   A++DAIE EIPLVV ITEG+PQ+DMA+VKH LK Q  TRLIGPNCPGIIKPGECKIGIMPGYIH  GKIG+VSRSGTLTYEAV QTT  G+GQSTCVGI
Sbjct:   24 MSANAKVWIDKDTRVICQGFTGKQGTFHSEQAIAYGTQMVGGVTPKKGGQEHLGLPVFNTVAEAVEGVQPDASVIYVPPPFCAKAIMDAIEAEIPLVVAITEGVPQQDMARVKHMLKAQDKTRLIGPNCPGIIKPGECKIGIMPGYIHTPGKIGVVSRSGTLTYEAVHQTTTAGLGQSTCVGI 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5636.15976.1 vs. uniprot
Match: A0A7S4UK23_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UK23_9STRA)

HSP 1 Score: 304 bits (778), Expect = 1.540e-101
Identity = 146/183 (79.78%), Postives = 163/183 (89.07%), Query Frame = 1 
Query:    1 MSTSAKVWIDQNTRVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTVSEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALKQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI 549
            MS +AKVW+D++T+VI QGFTGKQGTFH+ QAIEYG+  VGGVTPKKGGQTHLG PVFNTV+EA EGV+PDASV+YVPPPF   A++DAIENEI LVV ITEG+PQ+DMA+VK ALK Q  TRLIGPNCPGIIKPGECKIGIMPGYIH  GKIG+VSRSGTLTYEAV QTTV G+GQSTCVGI
Sbjct:   27 MSANAKVWVDKDTKVICQGFTGKQGTFHSTQAIEYGTNMVGGVTPKKGGQTHLGLPVFNTVAEAVEGVQPDASVIYVPPPFCAGAIMDAIENEISLVVAITEGVPQQDMARVKAALKTQNKTRLIGPNCPGIIKPGECKIGIMPGYIHMPGKIGVVSRSGTLTYEAVHQTTVAGLGQSTCVGI 209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5636.15976.1 vs. uniprot
Match: A0A1E7FEJ7_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FEJ7_9STRA)

HSP 1 Score: 304 bits (778), Expect = 1.650e-101
Identity = 145/183 (79.23%), Postives = 166/183 (90.71%), Query Frame = 1 
Query:    1 MSTSAKVWIDQNTRVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTVSEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALKQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI 549
            MS++AKVW+D+NTRVI QGFTGKQGTFH+ QAIEYG+  VGGVTP KGGQ HLG PVFNTV+EA + +KPDASV+YVPPPF  AA++DAIE EIPLVV ITEG+PQ+DMA+VK+AL+QQ+ATRLIGPNCPGIIKPGECKIGIMPGYIH KGKIG+VSRSGTLTYEAV QTT+ G+GQST VGI
Sbjct:   24 MSSTAKVWVDKNTRVICQGFTGKQGTFHSTQAIEYGTNMVGGVTPNKGGQEHLGLPVFNTVAEAVDELKPDASVIYVPPPFCAAAIMDAIEAEIPLVVAITEGVPQQDMARVKYALRQQSATRLIGPNCPGIIKPGECKIGIMPGYIHTKGKIGVVSRSGTLTYEAVHQTTIAGLGQSTVVGI 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5636.15976.1 vs. uniprot
Match: A0A6U3SMJ6_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SMJ6_9STRA)

HSP 1 Score: 304 bits (778), Expect = 1.880e-101
Identity = 146/183 (79.78%), Postives = 163/183 (89.07%), Query Frame = 1 
Query:    1 MSTSAKVWIDQNTRVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTVSEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALKQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI 549
            MS +AKVW+D++T+VI QGFTGKQGTFH+ QAIEYG+  VGGVTPKKGGQTHLG PVFNTV+EA EGV+PDASV+YVPPPF   A++DAIENEI LVV ITEG+PQ+DMA+VK ALK Q  TRLIGPNCPGIIKPGECKIGIMPGYIH  GKIG+VSRSGTLTYEAV QTTV G+GQSTCVGI
Sbjct:   27 MSANAKVWVDKDTKVICQGFTGKQGTFHSTQAIEYGTNMVGGVTPKKGGQTHLGLPVFNTVAEAVEGVQPDASVIYVPPPFCAGAIMDAIENEISLVVAITEGVPQQDMARVKAALKTQNKTRLIGPNCPGIIKPGECKIGIMPGYIHMPGKIGVVSRSGTLTYEAVHQTTVAGLGQSTCVGI 209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5636.15976.1 vs. uniprot
Match: A0A7S0GYI0_9EUKA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GYI0_9EUKA)

HSP 1 Score: 299 bits (765), Expect = 8.040e-100
Identity = 145/183 (79.23%), Postives = 164/183 (89.62%), Query Frame = 1 
Query:    1 MSTSAKVWIDQNTRVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQTHLGKPVFNTVSEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALKQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI 549
            MST+AKV++D+NT+VI QGFTGKQGTFH+EQAI YG++ VGGVTPKKGG THLG PVF  V+EAK+    +ASV+YVPPPFA +A++DAIENEI LVVCITEGIPQKDM +VKHAL+ Q+ATRLIGPNCPGIIKPGECKIGIMPGYIH  GKIGIVSRSGTLTYEAV QTT TG+GQSTCVGI
Sbjct:    1 MSTTAKVFVDKNTKVICQGFTGKQGTFHSEQAIAYGTKMVGGVTPKKGGTTHLGLPVFENVAEAKKETGCNASVIYVPPPFAASAIMDAIENEIDLVVCITEGIPQKDMVRVKHALRSQSATRLIGPNCPGIIKPGECKIGIMPGYIHLPGKIGIVSRSGTLTYEAVHQTTATGLGQSTCVGI 183
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5636.15976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ40_ECTSI4.010e-12697.81Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S1DBS3_CYCTE2.300e-10581.97Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7R9ZLR7_9STRA3.200e-10582.51Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
B7G0K7_PHATC7.150e-10580.87Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S0AIP9_9STRA1.860e-10481.42Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S2LEI1_9STRA9.330e-10280.33Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S4UK23_9STRA1.540e-10179.78Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A1E7FEJ7_9STRA1.650e-10179.23Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A6U3SMJ6_9STRA1.880e-10179.78Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S0GYI0_9EUKA8.040e-10079.23Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5636contigEcto-sp13_S_contig5636:3..4779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score366.3
Seed ortholog evalue8.3e-99
Seed eggNOG ortholog2880.D7FJ40
Preferred nameSCS-alpha
Model size549
KEGG rclassRC00004,RC00014
KEGG koko:K01899
KEGG ReactionR00432,R00727
KEGG Pathwayko00020,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0004776,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006104,GO:0006105,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Exons5
EggNOG free text desc.succinate-CoA ligase (GDP-forming) activity
EggNOG OGsCOG0074@1,KOG1255@2759
Ec32 ortholog descriptionSuccinate--CoA ligase (GDP-forming), alpha subunit
Ec32 orthologEc-10_000030.1
EC6.2.1.4,6.2.1.5
Cds size549
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463780.8764274-CDS-Ecto-sp13_S_contig5636:2..311681463780.8764274-CDS-Ecto-sp13_S_contig5636:2..31Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5636 3..31 -
1681463780.889701-CDS-Ecto-sp13_S_contig5636:1576..16751681463780.889701-CDS-Ecto-sp13_S_contig5636:1576..1675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5636 1577..1675 -
1681463780.898271-CDS-Ecto-sp13_S_contig5636:2018..21661681463780.898271-CDS-Ecto-sp13_S_contig5636:2018..2166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5636 2019..2166 -
1681463780.9069812-CDS-Ecto-sp13_S_contig5636:3064..32231681463780.9069812-CDS-Ecto-sp13_S_contig5636:3064..3223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5636 3065..3223 -
1681463780.9157515-CDS-Ecto-sp13_S_contig5636:4665..47791681463780.9157515-CDS-Ecto-sp13_S_contig5636:4665..4779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5636 4666..4779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5636.15976.1prot_Ecto-sp13_S_contig5636.15976.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5636 3..4779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5636.15976.1

>prot_Ecto-sp13_S_contig5636.15976.1 ID=prot_Ecto-sp13_S_contig5636.15976.1|Name=mRNA_Ecto-sp13_S_contig5636.15976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MSTSAKVWIDQNTRVIVQGFTGKQGTFHAEQAIEYGSQYVGGVTPKKGGQ
THLGKPVFNTVSEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCI
TEGIPQKDMAKVKHALKQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKK
GKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGI
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mRNA from alignment at Ecto-sp13_S_contig5636:3..4779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5636.15976.1 ID=mRNA_Ecto-sp13_S_contig5636.15976.1|Name=mRNA_Ecto-sp13_S_contig5636.15976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5636:3..4779- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTACGAGCGCAAAGGTGTGGATAGACCAGAACACCAGGGTCATCGT
ACAGGGCTTCACCGGGAAACAAGGCACCTTTCATGCCGAACAGGCTATCG
AGTACGGCTCCCAGGTAGGGTACTGCTTGAGGCGGTGCTTTGTGGCTTGG
GTCCTGTCGTGCTTACATATTTCGCTCTGGTTGTAGCACTGCTGCTGTTC
GATGGTGAATGTCGAAGATTATACAAACGCTCGGTGCTCCCTTGCAGTTT
GTGGTTTTCTCTGTCTCCAACCCGGTAGTATCGTCGCACTTCGAGGTGGG
AACGCATCATCACCAAAACAGGGTTTGCGTGCAAGTCAAGCCAAACTATG
TACCCATTGGGATAGAACTGCCAGCGAGGATGGAAACAGATAGTGCATGG
GAGGTGGTGATTGCGGTGTCTGCTGGGTGCCATCATGCACACAGATTTGA
TCGAATGAAGCGGGAAGACAACATGTGGGACGATTTCTTGTTTTTTCGTG
TTCTTCTGGCCTGGTTGACGTTGACGCTGTGCGGCAGTGTACCAGTACTA
ATGGACGAACTTCTCGAGTACAGAACCATCAAACTCCAAACTTCACCCCC
GCCCAGAAAAACGGGCTCTATTTATGGCGTTGCTATGCTTCTGCACGACC
CAAAAACCCTACGTTCGCCCCGATGCCGTAACGGATAGCGGTATCGAATA
CCTCGTGTGAAGCCGGATCATTGCAGTCTGGGGACGAGTCCTTGGTGTAC
ACGGGTAAGTGCACACCCCGAGAGCCAGCGCGGATGAGTCTCAAGCACAG
AGACGACCCTGGGTGCAACTGCTGAGGTCTGCGTTCACTGCTGCTGCAAT
TCTTATCCGTCGGCCGATTGACCCATTACCTCGTCTTCTGCTGGAGTACC
TGGCGATCTCCGTTGGCACGCCATAAAGTTGCAGCTTGCTTGTCTGGGCC
TCGTTGTTGCTGCTCTACATACCACCACCTTCCGAAGCACTGCTGCAACT
GCTGTTCTAAATGTAGTCAGCAATGCCATTCGTGAGAAAGTCGCGTACCT
AGAGCTTTAGCACAATAACGCACGATGCGCGATCGTGTTTGGTGTTGGGG
GTCAATCATGTAAACCACATATGAAGCTTGCGTTCTGTGTAAACATGGTT
TCTTCAAGTAAACAATTTGTCAGCTCTCTACAAGGAATGGTCGTTTTCGG
GCTTCCCAAGATTCAAGTCTCAAATCACTCAACATGGTTCCTCGTGGACA
ATCGGGACACGGCTGTACTAGCTTGAACCACCGCCGGAGCACAGCCTCAG
CTTTCGCACGGCCGCTTCCTTTACTTCCCTTGTGCTGATGACTGTTGGGT
GATGTCGGGGTCACGTCAAATAGCACCTTTGCCAGAGCAACCAACAGCCA
AGCGGCATATTGAAGGCCTACCTGCTCGAAAAGGGACAGATTTGTGGTGC
CGTGATTCCGGCGTCCAGCACAGCAGTTTGCGTTAAACGGCTCGTACCAT
GTTTGTACTCTTTGCGGTTGCCCTGCTCGTTGTATGCATATGCCACCTTC
ATTCAGTACGTCGGCGGCGTGACCCCTAAGAAGGGTGGCCAGACCCACCT
GGGCAAACCGGTGTTCAACACCGTATCGGAGGCCAAGGAGGGCGTCAAGC
CGGACGCTTCCGTGGTGTACGTGCCACCACCGTTCGCTGGTGCTGCCGTG
CTTGATGCCATCGAGGTAAATCGACGTCTTTGGGTGGGTTCGATAGTCGA
CGAGACACAAGAGGGACAAGCATCGTGTAGCCTGTCAATGTTCAAGTACT
TGTATTATTCTTCTCGATTATGTTGTGATGTGAAGATTATGTTTCTCGCC
GGCGGGGAATACCCGTTGCATTCGGTCACCATCCTAGCAATTTGACTCAT
ACGATTCAATATGGCCGCGCTCGCTTGTCATGTCCTTGCCTGCAACGTAC
GACGCTTGCAGCCCAAACTTAATCAATGCGCCACTCGGGGTCAATAGGAC
CGGCATACTGAATCGACGAAAGACAATTCCGGTCTGCCTTGCAAGCGGAA
GCTCGATAAACGGGCGGCGGACGATAATTCCCTTTAGCGTTACCCCACAT
TCTGTTGTAGAACTGCCTTGAAAACACTGCTATTCGTGGGTTTTCTAATG
TTAAGGTGAGGAAGGTTGCCACCACCCCGAGTGCTGTCGCGCATTTAAGC
AAGGCGACGTTGTTGTGTAACCCCCGCGGACGCTGCCATGATTCCTTGCC
TGGACGTGCTGCCATTGGCCAATTCTTGCACAGCTGCTGTCGGGTTTCCT
TGCTTTCACCCCCCCCTCACCGCGCCATATCGTCGTATTAGCGAATCGTT
ACCTAAACCTTCGCCAAGCGGAAGGATACGATGGACGCCTCCTGCCTTCC
AGGCTGCTGTATCAACTTTTTTACTGTGCATGTAATTCGTCGCCGATGGC
ACCAATTTTCGTCGCGTCGACAAGTGTTCTATAGCAGTCGTTCTAGCCCA
CCACCTCAACATCTTGCACTCCTCTCTATCATGTGATCATGAGTCATGGT
CGAAAGACATGAAAAGCTGTGCCCTCCCTCCTTTTATTGGCACCTTTACT
GACGAATGCCCAGAATGAGATCCCATTAGTGGTGTGCATCACGGAGGGCA
TCCCACAGAAGGACATGGCGAAGGTCAAGCACGCGCTTAAGCAGCAGACC
GCGACGCGTCTTATTGGTCCTAACTGCCCGGGCATCATCAAGCCTGGAGA
GTGTAAAATCGGTGAGACCATAGCTTTTTCTCCGTCGGTACGCCGTACTT
CCGTTTTGTCCCTGCATTGCGCAGCCTGTCGCGTCCATGTTTGTGGCGCC
AACACGACCGTTCGCCTGCTTACACCTTTGTTGCTGCTCAAGTTTTGGTT
CTCCTGAGACACCCGCTGATGGAGTCGATCCCGCACTGTCCTGACCGCGT
ACATGCTTGTCACTTGTTGATCTCGCGAAAGAGCATGCCTTGCCCCGTCC
ACGTTTGTGGTACACGTGAATCAGCCGGAAGACGTCAATTTCGCGCTTGC
GTACACCTTCGCCGTCATATATCTCGACGCGATTCGTTCGTTTCCGTCGT
TAAGGAATCATGCCTGGCTACATCCACAAGAAGGGAAAGATCGGCATTGT
CTCAAGGAGTGGCACCTTGACCTACGAGGCCGTGTGGCAAACCACCGTCA
CTGGTGAGTACGTTGAGATAAACATTCCCGCGTTGATGCATACGGCACAA
GTGATTGCAAGCAGCAGTAGTATTACCGCAGCGAGGAGTGTCATTCGTTG
GCCTATGCTCCTCAAGTGGTGGTTTTAAAGGCGGGTCAGAGGGGATGATT
AACCCAAGTGGAAGGAGCATCGATCATGAATCTGGCCGGGAATATTAGCG
CCGTGCGGGAAGACGATCGGCATCAATGACCACGATTGCCCCGGGAACAC
GGGGCTCTAAAAGCCCCCGAAACGGCTGTACCCCGCAATGTTGACAACCC
CGTTTGGATGTTTATTTAGATGACGGCTAAGACAAGTTTCCAACGTTTTG
TTGTTTTGGAATCCTTGTCCTTTCGTCTCTAGCCTCCCATGCTTCTTCGT
TGTAAGTATGTCGGCAGTATCGACAAACCGGCATTTCCACAGCAGCAGTA
GTAGAGCTCACTCGCGACTTCTGTCATCGACAGGACTGACGTGAGGGTTG
GTGGACATGTTCTTTTTTTCTTGCGTCGGTCAGACTCTTCTCTTTGCTGT
CTTGGAAGCACGGTCAGCGCCGCGTATGCTCCGTCGCCTCATGAGAGGGC
CTCCATTGACCACTTTTAGCGTGTCCAGGTTTGCTTTCTCCTGCTTGGGG
TGCTGCGGTCAGAGAGGGGCTGTCGATGTTCAATAGACCTCGGTTCTAGG
GTTTCAACGAGATAGAAGATCCAAGTATGCATTTCGAGACAATCGTGATA
CAGCAGAAGGTACGCCGCAATATGTTCGTGCTGGGCTCATATTCCCGGCA
AGAGCGCACCTTTGAATCCGTATTTCGGCTCCATTCTCGCAGTGGTATCC
CAGGCCTCCCAGGTGACGATGAACGGCAAACGGATTGACGCATTCTTGCT
GTTGTTTACTTTGCATGGGCGTATGTATATATATAGTTTGTCACAACGAT
TGCCGTTGTTATTCAGCCCTCTGAGCCCTGTAGTAGGGGGCGGTGCCGCA
ACGAGCTACGAGCAGACCTTCACCATTGATGCCACGAAGGGTGTCATCGT
GAACATCCGTACGTTACGAGGAAAAAGGCGGGCGTTGATGCTCATCTCTG
CGGTGTTTGCTTGCTCTTTTGCCTTTTTGCGCCGTCGATGATTTCGCCTT
CCTTCAGAGGCATACATTGTACCAGGAGTACTTTGTGCCGGCCGCCTTTG
GTTCTTCATGCCTCAAACGTATGTGCGGTGTACTACTCCATCTGCTGGCT
TGAATTTCACTACTCGTTGGTCTACCTGATCAGGACAAGTGTCAAGAGTT
TCAAAAGCAGATATTCAATAAAACCACCATAACCCTGCGTTTCCGTTACA
AAAAGAAACGCACCTGCTTGGTTGGTTGTCGCTTCATCCTTCAACATTTG
TTCTCTTTTACACTATGCTGTCCTTCACCGCTACACGAACTTGTCGCGCC
ACTTCACCTAGAGCACCGCTCCCTGTACTCCGTTTGCGGTTTGCTTGGTG
ATCGTGCTATTACCCTCCCTGCCCTACCATTTTTTTTCCAATTATCAGGC
ATGGGCCAAAGCACCTGTGTGGGTATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5636:3..4779-

>mRNA_Ecto-sp13_S_contig5636.15976.1 ID=mRNA_Ecto-sp13_S_contig5636.15976.1|Name=mRNA_Ecto-sp13_S_contig5636.15976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5636:3..4779- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTACGAGCGCAAAGGTGTGGATAGACCAGAACACCAGGGTCATCGT
ACAGGGCTTCACCGGGAAACAAGGCACCTTTCATGCCGAACAGGCTATCG
AGTACGGCTCCCAGTACGTCGGCGGCGTGACCCCTAAGAAGGGTGGCCAG
ACCCACCTGGGCAAACCGGTGTTCAACACCGTATCGGAGGCCAAGGAGGG
CGTCAAGCCGGACGCTTCCGTGGTGTACGTGCCACCACCGTTCGCTGGTG
CTGCCGTGCTTGATGCCATCGAGAATGAGATCCCATTAGTGGTGTGCATC
ACGGAGGGCATCCCACAGAAGGACATGGCGAAGGTCAAGCACGCGCTTAA
GCAGCAGACCGCGACGCGTCTTATTGGTCCTAACTGCCCGGGCATCATCA
AGCCTGGAGAGTGTAAAATCGGAATCATGCCTGGCTACATCCACAAGAAG
GGAAAGATCGGCATTGTCTCAAGGAGTGGCACCTTGACCTACGAGGCCGT
GTGGCAAACCACCGTCACTGGCATGGGCCAAAGCACCTGTGTGGGTATC
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