mRNA_Ecto-sp13_S_contig5628.15967.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5628.15967.1
Unique NamemRNA_Ecto-sp13_S_contig5628.15967.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5628.15967.1 vs. uniprot
Match: A0A6H5JPP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP5_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.130e-43
Identity = 105/136 (77.21%), Postives = 112/136 (82.35%), Query Frame = 2 
Query:    2 VTRDAAASVLSAEGIITTEDSLVTQEAERPLSPAVAQKGTGTAAXXXXXEESSRLPPMATESERLNQEPLRGDTTKMGKEQVNKGPKSTGKTTTTGLHSK-----TKPASKPHASRPDVEGRSGRGGVKGDKNTCL 394
            VTRDAAASVLSAEGIITT  SLVT+EAER LSPAVAQKG GTA XXXXX  SSRL P ATESERLNQEP RGDT K+GK  VNKGPK TGKTT TG+H+K     TKPASK HASRP+VEGRSGRGGV+GDK+   
Sbjct: 1208 VTRDAAASVLSAEGIITTGASLVTEEAERLLSPAVAQKGAGTAXXXXXXXXSSRLSPAATESERLNQEPPRGDTMKVGKGPVNKGPKGTGKTTMTGIHAKSYERKTKPASKRHASRPEVEGRSGRGGVRGDKSAAA 1343
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BLAST of mRNA_Ecto-sp13_S_contig5628.15967.1 vs. uniprot
Match: D7G2X1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X1_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 7.710e-43
Identity = 104/133 (78.20%), Postives = 109/133 (81.95%), Query Frame = 2 
Query:    2 VTRDAAASVLSAEGIITTEDSLVTQEAERPLSPAVAQKGTGTAAXXXXXEESSRLPPMATESERLNQEPLRGDTTKMGKEQVNKGPKSTGKTTTTGLHSK-----TKPASKPHASRPDVEGRSGRGGVKGDKN 385
            VTRDAAASVLSAEGIITTE SLVT+EAER L PAVAQKG     XXXXX  SSRL PMATESE LNQ P RGDTTK+G+EQVNKGPKS GK T TG H+K     TKPASKPHASRP+VEGRSGRGGV GDKN
Sbjct: 4074 VTRDAAASVLSAEGIITTEASLVTEEAERLLPPAVAQKGADXXXXXXXXXXSSRLSPMATESEHLNQAPPRGDTTKVGREQVNKGPKSRGKITMTGSHTKSNERKTKPASKPHASRPEVEGRSGRGGVSGDKN 4206
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5628.15967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPP5_9PHAE1.130e-4377.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X1_ECTSI7.710e-4378.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5628contigEcto-sp13_S_contig5628:6872..7718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score149.4
Seed ortholog evalue1.1e-33
Seed eggNOG ortholog2880.D7G2X1
Model size709
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ankyrin repeats
EggNOG OGs2ATNU@1,2RZSD@2759
Cds size369
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463780.1328633-UTR-Ecto-sp13_S_contig5628:6871..72091681463780.1328633-UTR-Ecto-sp13_S_contig5628:6871..7209Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5628 6872..7209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463780.146354-CDS-Ecto-sp13_S_contig5628:7209..72541681463780.146354-CDS-Ecto-sp13_S_contig5628:7209..7254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5628 7210..7254 +
1681463780.1580272-CDS-Ecto-sp13_S_contig5628:7394..77181681463780.1580272-CDS-Ecto-sp13_S_contig5628:7394..7718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5628 7395..7718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5628.15967.1prot_Ecto-sp13_S_contig5628.15967.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5628 7210..7718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5628.15967.1

>prot_Ecto-sp13_S_contig5628.15967.1 ID=prot_Ecto-sp13_S_contig5628.15967.1|Name=mRNA_Ecto-sp13_S_contig5628.15967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MSKEGVVVVGLRATRILASGVTDSAVTAGPPVDRSQGRGGGPEEASPADS
NALARAKFANEKETDTVREAQTTRSPLCQSDTSDKPSGGHTTIETKGNSR
SNARRSQRGQDSSRGIRSANAGR
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mRNA from alignment at Ecto-sp13_S_contig5628:6872..7718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5628.15967.1 ID=mRNA_Ecto-sp13_S_contig5628.15967.1|Name=mRNA_Ecto-sp13_S_contig5628.15967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=847bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5628:6872..7718+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCACCAGGGACGCAGCGGCATCTGTTTTGTCTGCGGAGGGAATAATCA
CGACAGAGGATTCTCTGGTGACGCAAGAAGCCGAACGACCACTTTCACCA
GCAGTTGCGCAGAAAGGGACTGGCACTGCCGCCGCCGCTGCTGCTGCCGA
GGAATCCTCACGGTTACCACCAATGGCGACAGAGAGTGAGCGCCTGAATC
AAGAGCCACTTAGGGGCGATACCACGAAGATGGGAAAGGAACAAGTCAAC
AAGGGGCCAAAGAGTACAGGCAAAACCACCACGACCGGTTTACACTCCAA
AACGAAGCCAGCCTCGAAGCCACACGCTTCTAGGCCAGATGTCGAAGGAA
GGAGTGGTCGTGGTGGGGTTAAGGGCGACAAGAGTGCTTCTGCTTCCGTC
GGGTTTTCGTCGACCACAGCGAAGCTAAAGCCCGAGCAGGAAGCTCCGAA
AGGCAGCACATCAAGCTTGCGTCTTAGAGAGGAAGAGGGTCCTGCCTCAG
TAAGGGGAAACGCTGACGAAGAGATACTTGCCTCGGGTGTCACCGATAGT
GCCGTCACCGCAGGGCCTCCGGTCGACAGGAGTCAGGGTAGAGGCGGAGG
TCCGGAGGAAGCGAGTCCCGCAGACAGCAACGCCCTAGCACGGGCTAAGT
TTGCGAACGAGAAAGAGACTGATACTGTTCGAGAGGCCCAGACAACAAGG
TCTCCCTTGTGCCAGTCTGACACGTCCGACAAGCCTTCAGGAGGCCACAC
GACGATCGAGACAAAAGGGAACTCGCGCAGCAATGCAAGGCGCTCGCAGA
GAGGCCAGGATAGCTCCCGTGGAATCAGAAGCGCCAACGCCGGACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5628:6872..7718+

>mRNA_Ecto-sp13_S_contig5628.15967.1 ID=mRNA_Ecto-sp13_S_contig5628.15967.1|Name=mRNA_Ecto-sp13_S_contig5628.15967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5628:6872..7718+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAAGGAAGGAGTGGTCGTGGTGGGGTTAAGGGCGACAAGAATACT
TGCCTCGGGTGTCACCGATAGTGCCGTCACCGCAGGGCCTCCGGTCGACA
GGAGTCAGGGTAGAGGCGGAGGTCCGGAGGAAGCGAGTCCCGCAGACAGC
AACGCCCTAGCACGGGCTAAGTTTGCGAACGAGAAAGAGACTGATACTGT
TCGAGAGGCCCAGACAACAAGGTCTCCCTTGTGCCAGTCTGACACGTCCG
ACAAGCCTTCAGGAGGCCACACGACGATCGAGACAAAAGGGAACTCGCGC
AGCAATGCAAGGCGCTCGCAGAGAGGCCAGGATAGCTCCCGTGGAATCAG
AAGCGCCAACGCCGGACGG
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