mRNA_Ecto-sp13_S_contig5620.15961.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5620.15961.1
Unique NamemRNA_Ecto-sp13_S_contig5620.15961.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5620.15961.1 vs. uniprot
Match: D7FI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 5.710e-92
Identity = 165/170 (97.06%), Postives = 165/170 (97.06%), Query Frame = 1 
Query:    1 AAGLAAARARAMAELRSVAGLEHAAALSKLAARIPGMSVSAVYLAVAQRVLCGETGGLPPEDMDLLRGALITDSGEEEEAEALSASVYHLLSPLLPKMAADDLVELAAAVCAPHAAGDHRGYYPCRRTTAAATSSPAPADNRMAPLRLTVRCRRRLLAAVEVAEGSGSAE 510
            AAGLAAARARAMAELRSVAGLEHAAALSKLAARIPGMSVSAVYLAVAQRVLCGE GGL PEDMDLLRGALITDSGEEEEAEALSASVYHLLSPLLPKMAADDLVELAAAVCAPHAAGDHRGYYPCRRTT AATSSP PADNRMAPLRLTVRCRRRLLAA EVAEGSGSAE
Sbjct: 2487 AAGLAAARARAMAELRSVAGLEHAAALSKLAARIPGMSVSAVYLAVAQRVLCGEAGGLSPEDMDLLRGALITDSGEEEEAEALSASVYHLLSPLLPKMAADDLVELAAAVCAPHAAGDHRGYYPCRRTTPAATSSPPPADNRMAPLRLTVRCRRRLLAAAEVAEGSGSAE 2656
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BLAST of mRNA_Ecto-sp13_S_contig5620.15961.1 vs. uniprot
Match: A0A6H5JKW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW6_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 1.130e-87
Identity = 161/172 (93.60%), Postives = 163/172 (94.77%), Query Frame = 1 
Query:    1 AAGLAAARARAMAELRSVAGLEHAAALSKLAARIPGMSVSAVYLAVAQRVLCGETGGLPPEDMDLLRGALITDSGEEEEAEALSASVYHLLSPLLPKMAADDLVELAAAVCAPHAAGDHRGYYPCRRTTAAATSSPAPADNRMAPLRLTVRCRRRLLAAVE--VAEGSGSAE 510
            AAGLAAARARAMAE+RSVAGLEH A LSKLAARIPGMSVSAVYLAVAQRVLCGETGGL PEDMDLLRGALIT SGEEEEAEALSASVYHLLSPLLPKMAA DLV+LAAAVCAPHAAGDHRGYYPCRRTTAAATSSPAPADNRMAPLRLTVRCRRRLLAA    VAEGSGSAE
Sbjct: 1286 AAGLAAARARAMAEVRSVAGLEHVAVLSKLAARIPGMSVSAVYLAVAQRVLCGETGGLSPEDMDLLRGALITGSGEEEEAEALSASVYHLLSPLLPKMAAHDLVDLAAAVCAPHAAGDHRGYYPCRRTTAAATSSPAPADNRMAPLRLTVRCRRRLLAAAAAVVAEGSGSAE 1457
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5620.15961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI79_ECTSI5.710e-9297.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKW6_9PHAE1.130e-8793.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5620contigEcto-sp13_S_contig5620:6772..7315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score304.7
Seed ortholog evalue2.9e-80
Seed eggNOG ortholog2880.D7FI79
Model size544
Hectar predicted targeting categorymitochondrion
Exons1
EggNOG OGs2D0V1@1,2SFKQ@2759
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-23_003720.1
Cds size543
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463779.686797-CDS-Ecto-sp13_S_contig5620:6771..73141681463779.686797-CDS-Ecto-sp13_S_contig5620:6771..7314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5620 6772..7314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5620.15961.1prot_Ecto-sp13_S_contig5620.15961.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5620 6772..7314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5620.15961.1

>prot_Ecto-sp13_S_contig5620.15961.1 ID=prot_Ecto-sp13_S_contig5620.15961.1|Name=mRNA_Ecto-sp13_S_contig5620.15961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
AAGLAAARARAMAELRSVAGLEHAAALSKLAARIPGMSVSAVYLAVAQRV
LCGETGGLPPEDMDLLRGALITDSGEEEEAEALSASVYHLLSPLLPKMAA
DDLVELAAAVCAPHAAGDHRGYYPCRRTTAAATSSPAPADNRMAPLRLTV
RCRRRLLAAVEVAEGSGSAEDASAAAATLAG
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mRNA from alignment at Ecto-sp13_S_contig5620:6772..7315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5620.15961.1 ID=mRNA_Ecto-sp13_S_contig5620.15961.1|Name=mRNA_Ecto-sp13_S_contig5620.15961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=544bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5620:6772..7315+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCAGGGCTGGCGGCGGCGCGAGCGCGGGCCATGGCCGAGCTACGGTC
GGTCGCGGGGCTCGAGCACGCCGCGGCACTGTCGAAGCTGGCGGCACGGA
TTCCCGGAATGTCGGTCTCGGCGGTGTACCTGGCGGTGGCGCAGCGGGTG
CTCTGCGGCGAGACCGGCGGGCTGCCGCCGGAGGATATGGATCTGTTGCG
AGGCGCCCTCATCACCGACAGCGGCGAGGAAGAGGAGGCGGAAGCATTAT
CTGCCTCCGTGTACCACCTCCTCTCCCCCCTGCTCCCCAAAATGGCGGCG
GATGACTTGGTCGAGTTGGCCGCGGCCGTCTGCGCCCCCCACGCTGCCGG
CGACCACCGGGGGTACTACCCCTGCCGCAGAACGACCGCCGCGGCCACAT
CCTCGCCGGCCCCCGCGGACAACAGAATGGCACCCTTGCGTCTCACGGTG
CGGTGCAGGCGAAGGCTCCTGGCGGCGGTGGAAGTCGCCGAGGGCAGCGG
TAGCGCGGAGGACGCTTCGGCGGCTGCAGCGACTCTTGCCGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5620:6772..7315+

>mRNA_Ecto-sp13_S_contig5620.15961.1 ID=mRNA_Ecto-sp13_S_contig5620.15961.1|Name=mRNA_Ecto-sp13_S_contig5620.15961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5620:6772..7315+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCAGGGCTGGCGGCGGCGCGAGCGCGGGCCATGGCCGAGCTACGGTC
GGTCGCGGGGCTCGAGCACGCCGCGGCACTGTCGAAGCTGGCGGCACGGA
TTCCCGGAATGTCGGTCTCGGCGGTGTACCTGGCGGTGGCGCAGCGGGTG
CTCTGCGGCGAGACCGGCGGGCTGCCGCCGGAGGATATGGATCTGTTGCG
AGGCGCCCTCATCACCGACAGCGGCGAGGAAGAGGAGGCGGAAGCATTAT
CTGCCTCCGTGTACCACCTCCTCTCCCCCCTGCTCCCCAAAATGGCGGCG
GATGACTTGGTCGAGTTGGCCGCGGCCGTCTGCGCCCCCCACGCTGCCGG
CGACCACCGGGGGTACTACCCCTGCCGCAGAACGACCGCCGCGGCCACAT
CCTCGCCGGCCCCCGCGGACAACAGAATGGCACCCTTGCGTCTCACGGTG
CGGTGCAGGCGAAGGCTCCTGGCGGCGGTGGAAGTCGCCGAGGGCAGCGG
TAGCGCGGAGGACGCTTCGGCGGCTGCAGCGACTCTTGCCGGC
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