mRNA_Ecto-sp13_S_contig56190.15957.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56190.15957.1
Unique NamemRNA_Ecto-sp13_S_contig56190.15957.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56190.15957.1 vs. uniprot
Match: D7G090_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G090_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 7.260e-40
Identity = 92/118 (77.97%), Postives = 96/118 (81.36%), Query Frame = 1 
Query:    1 MSKYDNTLLTPATCVASDDGMTMSPAGGRCRGRLSGRFGMRSSHKDLLLTSKTPXXXXXXXXXSDPAADIEKKRAKTSNIIKRAVHKINKXXXXXXPPSQSRSSSSRGAAVSGEPPKV 354
            MSKYD+TLLTPATCVASDD MTMS AGGR RGR SGRFG RSSHKDLLLTSKTPXXXXXXX  SDPAADI+K+RAKTSNIIKRAVHKINKXXXXXX              VS EPPK+
Sbjct:    1 MSKYDSTLLTPATCVASDDDMTMSQAGGRHRGRWSGRFGKRSSHKDLLLTSKTPXXXXXXXITSDPAADIDKRRAKTSNIIKRAVHKINKXXXXXXXXXXXXXXXXXXXXVSEEPPKI 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56190.15957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G090_ECTSI7.260e-4077.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56190contigEcto-sp13_S_contig56190:101..454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size354
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000350.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463779.4057984-CDS-Ecto-sp13_S_contig56190:100..4541681463779.4057984-CDS-Ecto-sp13_S_contig56190:100..454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56190 101..454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56190.15957.1prot_Ecto-sp13_S_contig56190.15957.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56190 101..454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56190.15957.1

>prot_Ecto-sp13_S_contig56190.15957.1 ID=prot_Ecto-sp13_S_contig56190.15957.1|Name=mRNA_Ecto-sp13_S_contig56190.15957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
MSKYDNTLLTPATCVASDDGMTMSPAGGRCRGRLSGRFGMRSSHKDLLLT
SKTPPPATTSSITSDPAADIEKKRAKTSNIIKRAVHKINKKRRRSLPPSQ
SRSSSSRGAAVSGEPPKV
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mRNA from alignment at Ecto-sp13_S_contig56190:101..454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56190.15957.1 ID=mRNA_Ecto-sp13_S_contig56190.15957.1|Name=mRNA_Ecto-sp13_S_contig56190.15957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56190:101..454+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAAATACGACAACACACTGTTGACCCCAGCCACCTGCGTGGCGAG
CGATGACGGCATGACAATGTCGCCGGCGGGGGGGAGGTGTCGGGGGAGAT
TGAGCGGCCGGTTTGGGATGCGCTCCTCCCACAAAGACCTGCTGCTGACA
TCGAAAACTCCGCCGCCGGCGACAACAAGCAGCATCACCTCGGATCCCGC
CGCTGACATCGAGAAGAAGAGGGCGAAAACGTCGAACATAATCAAGCGTG
CGGTACACAAGATAAACAAAAAGAGGAGGCGGTCCTTGCCTCCCTCTCAG
TCCCGGTCTTCTTCTTCACGTGGTGCTGCTGTTAGCGGGGAACCTCCGAA
GGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56190:101..454+

>mRNA_Ecto-sp13_S_contig56190.15957.1 ID=mRNA_Ecto-sp13_S_contig56190.15957.1|Name=mRNA_Ecto-sp13_S_contig56190.15957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56190:101..454+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAAATACGACAACACACTGTTGACCCCAGCCACCTGCGTGGCGAG
CGATGACGGCATGACAATGTCGCCGGCGGGGGGGAGGTGTCGGGGGAGAT
TGAGCGGCCGGTTTGGGATGCGCTCCTCCCACAAAGACCTGCTGCTGACA
TCGAAAACTCCGCCGCCGGCGACAACAAGCAGCATCACCTCGGATCCCGC
CGCTGACATCGAGAAGAAGAGGGCGAAAACGTCGAACATAATCAAGCGTG
CGGTACACAAGATAAACAAAAAGAGGAGGCGGTCCTTGCCTCCCTCTCAG
TCCCGGTCTTCTTCTTCACGTGGTGCTGCTGTTAGCGGGGAACCTCCGAA
GGTA
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