mRNA_Ecto-sp13_S_contig56130.15949.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56130.15949.1
Unique NamemRNA_Ecto-sp13_S_contig56130.15949.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56130.15949.1 vs. uniprot
Match: D7FXP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP6_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 6.730e-43
Identity = 85/97 (87.63%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:    1 GSSENLSVVPSDATSPLVGDTYGAERDGLRSRGGDSSRHSRSEAAVLEAIVGLERRMNERMDRMEGMLAGVCDRVEELSASLPHAARDVVGKRGAHG 291
            GSSENLSVVPSDA SPLVGDT GAE +GLRSRGGDSSRH RSEAAVLEAIVG+ERRMNERM R+EGMLAGVCDR+EELSA LPHAARDVV  RGAHG
Sbjct: 1030 GSSENLSVVPSDARSPLVGDTCGAEPNGLRSRGGDSSRHPRSEAAVLEAIVGVERRMNERMARIEGMLAGVCDRLEELSARLPHAARDVVETRGAHG 1126
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BLAST of mRNA_Ecto-sp13_S_contig56130.15949.1 vs. uniprot
Match: A0A6H5KXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC0_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.840e-38
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    1 GSSENLSVVPSDATSPLVGDTYGAERDGLRSRGGDSSRHSRSEAAVLEAIVGLERRMNERMDRMEGMLAGVCDRVEELSASLPHAA 258
            GSSEN+SVVPSDA SPLVGDTYGAER+GLRSRG DSSRH RSEA VLEAIVG+ERRMNERMDRMEGMLAGVCDR+EELSA LPHAA
Sbjct: 1083 GSSENISVVPSDARSPLVGDTYGAERNGLRSRGVDSSRHPRSEAPVLEAIVGVERRMNERMDRMEGMLAGVCDRLEELSACLPHAA 1168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56130.15949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXP6_ECTSI6.730e-4387.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXC0_9PHAE1.840e-3889.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56130contigEcto-sp13_S_contig56130:130..676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size547
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_001560.1
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463778.8518367-CDS-Ecto-sp13_S_contig56130:129..4231681463778.8518367-CDS-Ecto-sp13_S_contig56130:129..423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56130 130..423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463778.8735406-UTR-Ecto-sp13_S_contig56130:423..6761681463778.8735406-UTR-Ecto-sp13_S_contig56130:423..676Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig56130 424..676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56130.15949.1prot_Ecto-sp13_S_contig56130.15949.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56130 130..423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56130.15949.1

>prot_Ecto-sp13_S_contig56130.15949.1 ID=prot_Ecto-sp13_S_contig56130.15949.1|Name=mRNA_Ecto-sp13_S_contig56130.15949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
GSSENLSVVPSDATSPLVGDTYGAERDGLRSRGGDSSRHSRSEAAVLEAI
VGLERRMNERMDRMEGMLAGVCDRVEELSASLPHAARDVVGKRGAHG*
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mRNA from alignment at Ecto-sp13_S_contig56130:130..676+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56130.15949.1 ID=mRNA_Ecto-sp13_S_contig56130.15949.1|Name=mRNA_Ecto-sp13_S_contig56130.15949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=547bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56130:130..676+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAGCAGCGAAAACCTTTCCGTTGTTCCTTCAGATGCCACGTCACCTTT
GGTTGGTGACACTTATGGAGCGGAGCGGGACGGCCTTCGCTCGCGTGGCG
GAGACAGTTCCCGACATTCCCGGTCAGAAGCGGCTGTGCTCGAGGCAATT
GTCGGACTGGAGCGAAGAATGAACGAGAGGATGGACCGGATGGAGGGAAT
GTTGGCTGGCGTGTGCGATAGAGTGGAGGAGCTCTCGGCTAGCTTGCCTC
ACGCAGCAAGGGATGTAGTGGGAAAGAGGGGAGCCCATGGATGAGTCGAG
GGCAAAGCGCACCAAACCACGTGCTTGTTGATGCTGATTCCCCTTCGTTC
GCCCTCGTGGCTAAGAATTTAACCGTTGTTGAAGACCTCTGGTGGTAAGG
TGTAGTCGCTCTTTATAGACTAGACATCGATTGGTTAAATAAGTGACAAG
TTGAACTTGTGCTGCCAGGGAAAATCCTATTTTCGGCCGCCCGTTTGTCA
CATTTTTCGACTGTTTGCTGTTCATGATGACCAGACTACATTAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56130:130..676+

>mRNA_Ecto-sp13_S_contig56130.15949.1 ID=mRNA_Ecto-sp13_S_contig56130.15949.1|Name=mRNA_Ecto-sp13_S_contig56130.15949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56130:130..676+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAGCAGCGAAAACCTTTCCGTTGTTCCTTCAGATGCCACGTCACCTTT
GGTTGGTGACACTTATGGAGCGGAGCGGGACGGCCTTCGCTCGCGTGGCG
GAGACAGTTCCCGACATTCCCGGTCAGAAGCGGCTGTGCTCGAGGCAATT
GTCGGACTGGAGCGAAGAATGAACGAGAGGATGGACCGGATGGAGGGAAT
GTTGGCTGGCGTGTGCGATAGAGTGGAGGAGCTCTCGGCTAGCTTGCCTC
ACGCAGCAAGGGATGTAGTGGGAAAGAGGGGAGCCCATGGATGA
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