mRNA_Ecto-sp13_S_contig5613.15948.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5613.15948.1
Unique NamemRNA_Ecto-sp13_S_contig5613.15948.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5613.15948.1 vs. uniprot
Match: D7FZX5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZX5_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 3.600e-68
Identity = 119/126 (94.44%), Postives = 124/126 (98.41%), Query Frame = 1 
Query:  226 KTAEVCTDENVRELCGYEEVDENLLPENIPDLNVCVCQVASGAWDLCVDFTSSCENIISDRRFLFMSLISLWVGLGLAFIVAVVSMRVVATTYDAAAIAKAEEKKLMKAKFARDSATAAPPFGGPV 603
            KTAEVCTDENVRELCGYE+VDENLLPE+IPDLNVCVC+VASGAWDLCVDFTS+CENI SDRRFL MSLISLWVGLGLAFIVAVVSMRVVATTYDAAAIAKAEEKKLMKAKFA+DSATAAPPFGGPV
Sbjct:  178 KTAEVCTDENVRELCGYEDVDENLLPEDIPDLNVCVCRVASGAWDLCVDFTSNCENITSDRRFLLMSLISLWVGLGLAFIVAVVSMRVVATTYDAAAIAKAEEKKLMKAKFAKDSATAAPPFGGPV 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5613.15948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZX5_ECTSI3.600e-6894.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5613contigEcto-sp13_S_contig5613:2722..8321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1853
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_003720.1
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463778.7918715-CDS-Ecto-sp13_S_contig5613:2721..30771681463778.7918715-CDS-Ecto-sp13_S_contig5613:2721..3077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5613 2722..3077 +
1681463778.8018064-CDS-Ecto-sp13_S_contig5613:6825..70751681463778.8018064-CDS-Ecto-sp13_S_contig5613:6825..7075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5613 6826..7075 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463778.8117595-UTR-Ecto-sp13_S_contig5613:7075..83211681463778.8117595-UTR-Ecto-sp13_S_contig5613:7075..8321Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5613 7076..8321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5613.15948.1prot_Ecto-sp13_S_contig5613.15948.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5613 2722..7075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5613.15948.1

>prot_Ecto-sp13_S_contig5613.15948.1 ID=prot_Ecto-sp13_S_contig5613.15948.1|Name=mRNA_Ecto-sp13_S_contig5613.15948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp
CLSACLSVSVSSSLCPPLCLSVSFSLSVYVLSLCLSVSLSLCHLCLSAVY
LPPCPCVGLPSSRSHSHSLRRVNRSKTAEVCTDENVRELCGYEEVDENLL
PENIPDLNVCVCQVASGAWDLCVDFTSSCENIISDRRFLFMSLISLWVGL
GLAFIVAVVSMRVVATTYDAAAIAKAEEKKLMKAKFARDSATAAPPFGGP
V*
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mRNA from alignment at Ecto-sp13_S_contig5613:2722..8321+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5613.15948.1 ID=mRNA_Ecto-sp13_S_contig5613.15948.1|Name=mRNA_Ecto-sp13_S_contig5613.15948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5613:2722..8321+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCTGTCTGCCTGCCTCTCGGTCTCTGTCTCTTCGTCTCTCTGTCCGCC
TCTCTGTCTTTCTGTCTCTTTCTCTCTTTCCGTGTATGTTTTGTCTCTCT
GTCTCTCCGTCTCTCTGTCTCTCTGTCATCTCTGCCTGTCGGCCGTGTAC
TTGCCTCCGTGCCCCTGCGTCGGACTCCCTTCTTCTCGTTCCCATTCACA
CTCCCTCCGACGCGTGAATCGATCCAAGACCGCCGAGGTTTGCACTGATG
AAAACGTACGAGAACTGTGCGGATACGAAGAGGTGGACGAAAATCTATTG
CCAGAGAACATCCCAGATCTCAACGTTTGCGTCTGCCAAGTGGCGTCAGG
GGCCTGGTAAGGGGGAGCCCAAGCCAGACCCGCCGGTGTTGGTCGTTACT
TGAATGTGGAGTTCATTTGTTTATTGTGCGAGGTGAACCCCGACGATGTT
GGTTTTCAGTGTAAAGCGAACCCCGACGACTTCATGAAGGTCAATTTGGA
AACTTTGATATTTCTAGAGTACGGTGACATCGCCTTGGACGATGCAACCG
GTCGACCAGGGGTTTTGAGCCAACCAGGAATTTCCTGTAGAAAACATTGA
CCAATGAGTATTGACCAATGAGCACTGACCAATGAGAAACTGCGGGCACT
TTTCTAACGTAGTTCCCAGGGTAGCTCGCGTTCCTCCACCCTAATAGATC
AAGCCTCCAGCAGTTTTTCTTCCTCCACTCACTACTGTGTGCACTGGTCT
GAAGTGAGACAAAAAAATGGTGTGCATGCAAATTATGGAAACAAATCACC
GCCAAGACTAGTAACCGTCGGATTAATCGTCGGATCCCACCCTAGTTGCC
GGCCTGTTGTCGGTGGTTTCTTCGAAGCCACACTTCAATCCTTTAACGAC
CCGGTGCAGTTGGAGTGAGCGGCGCTCGGCGCTGACGTGACGTGGAATAC
ATTACGCACTACTTGCTCTGTTCTGATCCAAAGGCGTTTTGTTGATATTT
TTTTCCTCTTGTTCTCCACCAACATCTGACGGTCGTTGCCAAAGGAGAGA
TTTTTCCAACTTCTCGGAATTGGCATCCGTCTTAGAGGTACAGTACGTTG
CCACTCGCCGCCTGTTCCAGCCGGTTTGGTTTATAAAACCCTGGTTGGAT
TTTGCAACATGAACGCTGGTTGAACCCTTGGGCTAAGATAATAAATTTAA
GAAATTCTCCGACCACTTGCCCAGGTATTCCGACATTTGGCAGGTAGCGT
TACAACACTTGATAGCAGCAACTAGCTGTGTTTATGCGTTCCCTCTTGCT
CAGTGTTGCCTGGGAGTAAGGGGGAGCGAGAGCGAGCGACTGAGAGGGAA
AACAAGGATTTTATGGAAGGATTCGGACTAAAGCGGGGCACTTAGTGGTC
GGATCTGCTCCACACTGTATTCTCGTCACAATTGGTGTCGTCGGAAGCCG
ACTACTTCGGACGGTATTTCTATCACCGAACAACGGCGTGCCGTAGACAG
CGCCGCCGCCGCTGCCAACCCAGGTGAGGAGTGCGGCCGACTCTTTGCTA
GGCGGAAAGTAAACAGCAGTGACGATGAGACCGTTCGAAAGAGCAACTGA
TCGTAACCGGATATTCGTCAGCATCGTGCCGAACTGGAAACCAACGGAGA
AAAAAAGGCGAACACAACTCCGCTCGTTCTGCAATCTTCGACGGTGAAGG
ACGAGAACAAGGCCACTTGCGCACTCTTAAGGCTGCTATAATAGTGGGGC
TTCAGTCTGGCAGTCGCGCTCGATGTGGCCGTTCTCGCCGCACTTGTTGC
ATGTCGTGAGAGGGTACTTGCGGAAAGAGTGGACACTCGCTTGGCCGGTC
TTGCCCGCGGCACCGCGGCATTTGTTGCAGTTAGCCTGCCTGCTCCCCTT
GCCGCCCCGGCCCTTGTTGCGCGTCCGGTGGCTGCACTGCGTGGGATGCT
AAGGCGAGTGGCTGCATCCCGTGGGCTCCGTCACCGCCCCCTGCCCCAGC
CATGCCTCTCCCGATGAGCGCGGGGTGGTGCTTTGGCAAGCCTGCTTAGA
GCCGCGCCTCTTTCAGCTTCTTGAACCCAGCCTCACGGTCCACTACCGGG
TTCTTGTGAGCCGAAGACCGTACAATGAGTTGTCGTTTTCGGCTCACAAG
AACCGGACAGTGGACCGTGAGGCTGTGCTCAAGAAGCTTACAGAGGCGCG
GCTTCAAGCCGGCTTGTCGAAGCACTACCCCGCGCTCATCGGGAGATGCA
TAGTTGGGGCAGGGGGCGGTTACGGAGCCCACGGCATACAGCCACTCGTC
TTAGCATGCCAGGCGGGCTATAGGACACAGTTCAACGGGGACGCGCAACA
ACGGCCAGAGCGGCAAGGGGACCAGGCAGGCTTAATGCAACAAATGCCGC
GGTACCGCGGGCGAGACCGGCCGAGCTATTATCCACTCTTTCCACAACTG
CCGTCTCACGACATGCAACAAGTGCGGTAAGAATGGCCACATTGAGCGCG
ACTGCCAGACTGAAGCCCCTCTAGTAGCGTTGTTCTTGTCCTTTACTGTC
CAAGATTGCAGAACGAGCAGAGTTGTGTTCGCCTTTCGTTTCGTTGTTTT
CCAGTTCGGCATGATGCTGACGAATATCCGGTTTCGATTAGTTGCTCTTT
CGAACGGTCTCGTCAGCGCTGTTTTCTTTCCGCCTAGCAGAGAGTCGGCC
GTACCCGTTACATACGTTGGCGACGGCGGGCGGCGCTGTCTACGGCACGC
CGTTGTTCGGTGATGGAAAGATCGTCGTAAATAGGCGGCTCTCGACGGGA
TGGGTAGGGAAAGTAGGAGAGCTTGAAGGAAGAGTAGTGGAGCTTGGAAG
GCTCTTGTTCGACGGCGGCGGTGCGGGACGAAGAGGCCGCCGCCGCCGCA
CACCATGCGCGGGAATTGGTGCGTCAAGAACGGCAGCAGAGAGCTTTTCC
AAGGCCGCCTAAAAGGCCACCAAGCTGCGGGACCGGCGCTCACCGCAACC
GATCGCCTCCAGCAACTACCCAAAAGAGAAGGCCGCCCTTGAGCGCCAGC
TGCATGACAGGCAAGCCGCAATCGAACACGCGGAACGAGAGACAAAGCCC
CGTCGACGACTTCGGCAGGAAGCCACACGCTTAGCACCCAAGGCCGCATC
CGTGGTGGCGCCCGCAAGGCCGCTCCCTCCCCATCAGCCCGTCGGACCAG
CTCCAGACGGCGATCTCGTCACAATTTGGGCTGCAGGACCCTTGTGACGC
GAGTTGTGTTGTAGCTTTAGACGTTACACCGGTAATAGCGTTCAAACCCT
CCCCTCGCGGTGTGTGAGGATTGAACTGGGTTCATCTGTCGCGAAACTGG
CGTATTTTGGGGCGCTCATGTTGCCCAGCGCACGACCAACCCCCCCCCCC
CCCCCCCGGCGGTTGGTAGCTGTCAGAGTTGCGACATACTAGGTACGTAG
TATTCGATGCCCCGGCGCATTTCTCTTGTTTTTTCTCTTGCTCTTGACCC
CCCACCGCCGGGTCTCCCACCCTTTCTGCAGCGTTCCCAAACGACCCATG
GGCTGCCCACGAGCGGCCCATGGGCAACCCATGGGTGGCCAACCAGGGTA
CTCCTAAACAATAGATTATCTACTTCGGAACGGGCACGTAGCGGCTAAAT
AACCCTAACGCTAACTGTAACCCTAACCGTAAGCCCACACGGCACCTGCT
AGGTTGGCGTTTGTGGCTAAGTTTTAGGTCGATGTGCAGGTGGCGAAGTT
CTAGGTTGAAGTGCCCATGGGCGGTCCATGGGTGACACATGGGTGTCCCA
TGGGCGGTGAAGCAAAACTGTCAGCAGCCTGGGAGACCGCCAACGCCTAG
GTGATGGGTCCTACCTATGGCAACAAAGCTCCGTCCTCTCAAGGACGCGT
GGTCATTGGTCTTCATGACTACGGCATGCACGACTATGAGTCGCCCCCCC
CTCCCCCTCCCCGCGACTTCCGGCTGTCGTCGCCCGTACAAATCCCCATC
CCCGTCGACTGCGGTTATTACTAGAACGGGTAAACTTTCTTTATTTATTA
ACACACAAGTTTTTTTTTTTAATCCCGATCCCTTGCTTCGGCTGCTGCTG
CCAGGGACTTGTGCGTGGACTTCACCTCTAGCTGCGAGAACATCATCTCG
GACAGAAGGTTCCTGTTCATGTCGCTCATCAGCCTGTGGGTCGGCCTGGG
CCTGGCGTTTATCGTGGCCGTGGTGTCGATGAGGGTGGTGGCCACGACCT
ACGACGCGGCGGCGATCGCCAAGGCGGAGGAGAAGAAGCTCATGAAGGCC
AAGTTCGCCAGGGACTCGGCGACGGCTGCACCGCCTTTCGGGGGTCCCGT
TTGATTTTTGTTCGGCACGATGACAAATTGTGTCGACCGTCTCGTGGGGG
AGTGCGGTGTTGTGTGCTGTATACGGCTACTGGCAAAGTCAAATCCGTTA
CATTCGGCGCCAACTTTCAAGGTATTAGTCTAGCGGGGGCGCACACCGTC
GTTTTACGGTATAATAAATTGCTGAATAATTGGCAGTGCTTGATGGAATC
GCCCCGTATATGTATGTGGTGCCTAGTTTTTGTGCAGACGTGGAAGAGTG
TACGAAGTCCGCTAATACCAACTCACTCTAAAAGCGGTAAGTAACGCAGT
TGTAGCGCCATCGCTGAGTTTCGACGGCAAATCCATTTGGACGTAGTGCT
ATATTGTTTTATGTTTGAGCCTTTTTTGTATTAATGCATATGATAGTTGG
TCGTCGTTTCCGACACGAACAAACCCTCCGGTTTAGGCAACGCGTTTCGC
GACTTTTTTTTCTGTTTTTTGAACCCTTGAGATAACGGTGTAAAATTGAG
CGAACGTTGGTGTGACTCTCGTGTCCAGCGGTTTCAATGTCAAGACATAA
GTCTACATGTATGTGGTCCCAGGGTTTGCTAGCGAAAGGGACGTGCCAGC
GGTCGCAAAGTGATTTTGGGTGCCTGATTTCTTTCGGGTTCTACTTATGT
CCGATTGTGTAGGCAAGCGTTGTTGTTGCCTTCACACTACAAAGTGTGGG
AGGGCCTACAAGCTGTCATGTTGTGGTACAGTAGTGAAGCCTGTTTAGTG
TCGGGTGCCCGGTGTTGTGTCGTCGGTGTTTTCGGCTCGCACAGACTGAA
ATACCGAGTCGTTCTGTACTCTGAATAGCGCCGCTGTTCGGTATAACAGT
GCCGGTAAAATCTCTCGACACATGCCAGCACATACAGGCCCACTACTGCT
GTACGTGTAGTATAGTATTATTCGGTTCTTGTCACGGGCGTAAGCTCTAA
TTACTTGGTGGTAGACTAAAATAAAGTGGTCGTCCTTGTCATCTTGTGGT
GGACCACGTGTGCGTGCGTTTTGCATTCATTGGTTGATGGATGGGTTCGG
TTGTTCGTCGGCATAAATGCATGTTGAATGTGCGTGCACCTGTTGTTCGC
CGTAGCTTTTGGCTGAGGTGTGCCTCATTGTTAGAACTCCATGTCATGAG
TGTCTGCGCGTGCGCGTGGTTTTCTCGCTCTCCTGGAGCACACATTGTCC
ACGGTCTTTGCTTGTTACCTACACACCGGGATTCCATATATATGGATGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5613:2722..8321+

>mRNA_Ecto-sp13_S_contig5613.15948.1 ID=mRNA_Ecto-sp13_S_contig5613.15948.1|Name=mRNA_Ecto-sp13_S_contig5613.15948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5613:2722..8321+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCTGTCTGCCTGCCTCTCGGTCTCTGTCTCTTCGTCTCTCTGTCCGCC
TCTCTGTCTTTCTGTCTCTTTCTCTCTTTCCGTGTATGTTTTGTCTCTCT
GTCTCTCCGTCTCTCTGTCTCTCTGTCATCTCTGCCTGTCGGCCGTGTAC
TTGCCTCCGTGCCCCTGCGTCGGACTCCCTTCTTCTCGTTCCCATTCACA
CTCCCTCCGACGCGTGAATCGATCCAAGACCGCCGAGGTTTGCACTGATG
AAAACGTACGAGAACTGTGCGGATACGAAGAGGTGGACGAAAATCTATTG
CCAGAGAACATCCCAGATCTCAACGTTTGCGTCTGCCAAGTGGCGTCAGG
GGCCTGGGACTTGTGCGTGGACTTCACCTCTAGCTGCGAGAACATCATCT
CGGACAGAAGGTTCCTGTTCATGTCGCTCATCAGCCTGTGGGTCGGCCTG
GGCCTGGCGTTTATCGTGGCCGTGGTGTCGATGAGGGTGGTGGCCACGAC
CTACGACGCGGCGGCGATCGCCAAGGCGGAGGAGAAGAAGCTCATGAAGG
CCAAGTTCGCCAGGGACTCGGCGACGGCTGCACCGCCTTTCGGGGGTCCC
GTTTGA
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