mRNA_Ecto-sp13_S_contig5612.15947.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5612.15947.1
Unique NamemRNA_Ecto-sp13_S_contig5612.15947.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5612.15947.1 vs. uniprot
Match: A0A6H5JGI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI3_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.010e-33
Identity = 82/118 (69.49%), Postives = 84/118 (71.19%), Query Frame = 1 
Query:   22 QAPLAASGNHSKDGKKAGAGSGGEVAGDHAAAKMAGLRPAGGGGAANGFWRLGGRAAKTAREEGGRGGGDPESDQGLVVSRGVSVTADVHVPFATVAVTRGGKLCGRIVAKEFLLEDG 375
            Q  LAA GNHSK+G KAGAGSGGEVAGDHAAAKMAGLR AG                             PES+QGLVVSRGVSVTADVHVPFATVAVTRGGKLCGRIVAKEFLLEDG
Sbjct: 1924 QPALAAPGNHSKEGNKAGAGSGGEVAGDHAAAKMAGLRRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPESEQGLVVSRGVSVTADVHVPFATVAVTRGGKLCGRIVAKEFLLEDG 2041
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BLAST of mRNA_Ecto-sp13_S_contig5612.15947.1 vs. uniprot
Match: D8LJC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC8_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 7.270e-22
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:  229 DPESDQGLVVSRGVSVTADVHVPFATVAVTRGGKLCGRIVAKEFLLEDG 375
            DPESDQGLVVSRGVSVTADVHVPFATVAVTRGGKLCGRIVAKEFLLEDG
Sbjct: 1456 DPESDQGLVVSRGVSVTADVHVPFATVAVTRGGKLCGRIVAKEFLLEDG 1504
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5612.15947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGI3_9PHAE1.010e-3369.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJC8_ECTSI7.270e-22100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5612contigEcto-sp13_S_contig5612:6961..8275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size375
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463778.660608-CDS-Ecto-sp13_S_contig5612:6960..72151681463778.660608-CDS-Ecto-sp13_S_contig5612:6960..7215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5612 6961..7215 +
1681463778.6710155-CDS-Ecto-sp13_S_contig5612:8155..82751681463778.6710155-CDS-Ecto-sp13_S_contig5612:8155..8275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5612 8156..8275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5612.15947.1prot_Ecto-sp13_S_contig5612.15947.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5612 6961..8275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5612.15947.1

>prot_Ecto-sp13_S_contig5612.15947.1 ID=prot_Ecto-sp13_S_contig5612.15947.1|Name=mRNA_Ecto-sp13_S_contig5612.15947.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MLPPQAPQAPLAASGNHSKDGKKAGAGSGGEVAGDHAAAKMAGLRPAGGG
GAANGFWRLGGRAAKTAREEGGRGGGDPESDQGLVVSRGVSVTADVHVPF
ATVAVTRGGKLCGRIVAKEFLLEDG
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mRNA from alignment at Ecto-sp13_S_contig5612:6961..8275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5612.15947.1 ID=mRNA_Ecto-sp13_S_contig5612.15947.1|Name=mRNA_Ecto-sp13_S_contig5612.15947.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5612:6961..8275+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCCGCCGCAGGCGCCGCAGGCGCCGCTGGCGGCATCTGGAAACCA
TTCCAAGGACGGCAAAAAGGCCGGAGCCGGCAGCGGCGGCGAGGTCGCCG
GCGATCATGCGGCGGCGAAGATGGCGGGGCTGAGGCCAGCCGGAGGAGGG
GGGGCCGCGAATGGGTTTTGGCGCTTGGGGGGTAGGGCGGCGAAGACTGC
GCGGGAGGAGGGGGGGCGCGGGGGCGGTGATCCCGAGAGCGACCAGGGGT
TGGTGGTGAGTGAGCTTTCGTTTGGCCATCAGGTGCCGCTGTACGCGATC
GATGTGTTTGTTGCGGCGAAAAGCCCGCGGATGGTGTGCGTACCGTGGGA
GGAGGCCCGGTTTAGCGGTCCATAATAGTGTCAAAAAATGTTACAGCCGC
TGTTGGGGGTATCGCCGCTAAACCGGAGTGGCAATTGTTTAGTAGGCAGA
CTGCCGAGGTGAAGCCGTGCGACGAGATTTTGGAGCTGCTATGTATTCAG
GGCATCCCGCTGAACAGGGAACCGCTACGCTAACGCGGGACCACGAGTGA
AACGGGTGTTTTACTTCACCGTTTGTTGTCGCTCGGTTGAAAACGAAGAC
TCGGCTGCCGCGGTCGCCATCAATACTAAGAATGTGGCCCGGTCTCGCCA
TCTCAGATGATAGGAACCTCGTTGGATAGTGGGCTGGTTTCGAGTCTGTT
TTATGCATGTTGCGCATGTACACTGGGCTGTTTTTCTCGTTGTGCTTTTT
CGCGTGTTTTCGTCCGACAAATCTAAGAAAAGGCTTGAAATACGTATTTA
TGAAACATTTCGTTTGTGCGCTTTTTTTTTCTGCGTGTTTTCCGTCGTCC
TCCAGGTGAGTGGAGGCTTTTTGTAAATGTCGGAGATGGGACACCAGTGT
TATCGTATATGTACAATGTAGCGTTTATTTCCCCACAACCTGAGACGGTG
GTGCCATCTTTCCGGCTCTTAACGGCACACTGAAATATTATTTCTCTCGT
CTACGTTGTAATGTTTTTGCGTGTTTTCATCGGACAAGCGAGAAGTAAAG
ACTAAATAAATAACACCGAAACATTTTTTTCTCGGCTTTTTTCGCATGTT
TTTTTTGTTTGTCCGACAAGCAAAGTAAAAGACTAAATTTACTGAACCGT
TTTTTCGGTCTCCTCCTGTTTTTTCGCGTTTTTTTTGTCCTCCAGGTGAG
TAGAGGCGTCTCCGTAACGGCCGACGTGCACGTTCCTTTTGCGACTGTGG
CGGTAACGAGGGGGGGCAAGCTTTGCGGGAGGATCGTCGCCAAGGAGTTC
CTGCTCGAAGACGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5612:6961..8275+

>mRNA_Ecto-sp13_S_contig5612.15947.1 ID=mRNA_Ecto-sp13_S_contig5612.15947.1|Name=mRNA_Ecto-sp13_S_contig5612.15947.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5612:6961..8275+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCCGCCGCAGGCGCCGCAGGCGCCGCTGGCGGCATCTGGAAACCA
TTCCAAGGACGGCAAAAAGGCCGGAGCCGGCAGCGGCGGCGAGGTCGCCG
GCGATCATGCGGCGGCGAAGATGGCGGGGCTGAGGCCAGCCGGAGGAGGG
GGGGCCGCGAATGGGTTTTGGCGCTTGGGGGGTAGGGCGGCGAAGACTGC
GCGGGAGGAGGGGGGGCGCGGGGGCGGTGATCCCGAGAGCGACCAGGGGT
TGGTGGTGAGTAGAGGCGTCTCCGTAACGGCCGACGTGCACGTTCCTTTT
GCGACTGTGGCGGTAACGAGGGGGGGCAAGCTTTGCGGGAGGATCGTCGC
CAAGGAGTTCCTGCTCGAAGACGGT
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