mRNA_Ecto-sp13_S_contig5605.15937.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5605.15937.1
Unique NamemRNA_Ecto-sp13_S_contig5605.15937.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5605.15937.1 vs. uniprot
Match: D8LQK6_ECTSI (Transcriptional regulator, AraC family with Parallel beta-helix repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQK6_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 8.520e-29
Identity = 73/154 (47.40%), Postives = 89/154 (57.79%), Query Frame = 1
Query:   28 PGEGVEYVIFVQNTGTITMSGLQVSDGLLGESLDCDESPAGGYLAPKSSITCTGTYQINQGDIDLGHVSNTAIVNAVEPDGTAVEEPGGSLLSLPRRPEISLAVETCTFTGSDANRAEVGQGVAYTFTMKNTGSTTLIGLDVNSGFLDQALVGV 489
            PG+ V Y I + N G++T+  +   D     +  C E   G  L P     C G   + Q ++D   V  T  + A +     VE+   S + LP    + L VETC+FTGSDANRAEVGQGVAYTFTMKNTGSTTL GLDVNS FLDQAL  V
Sbjct:   16 PGDAVVYTITITNDGSLTLHDV-TPDSPQALAWAC-ELAEGAALVPGVETKCVGRLVLTQNNLDEAQVVTTVTITATDSANELVEDDLSSTVELPTSSSL-LVVETCSFTGSDANRAEVGQGVAYTFTMKNTGSTTLTGLDVNSVFLDQALDNV 166          
BLAST of mRNA_Ecto-sp13_S_contig5605.15937.1 vs. uniprot
Match: UPI001CC142F1 (DUF11 domain-containing protein n=1 Tax=Nocardioides rotundus TaxID=1774216 RepID=UPI001CC142F1)

HSP 1 Score: 100 bits (250), Expect = 1.140e-21
Identity = 59/153 (38.56%), Postives = 83/153 (54.25%), Query Frame = 1
Query:    1 DNDGDGDCDPGEGVEYVIFVQNTGTITMSGLQVSDGLLGESLDCDESPAGGYLAPKSSITCTGTYQINQGDIDLGHVSNTAIVNAVEPDGTAVEEPGG-SLLSLPRRPEISLAVETCTFTGSDANRAEVGQGVAYTFTMKNTGSTTLIGLDVN 456
            D DGD   D GE ++Y   V NTG +T++G+ V D  +G ++ C   P    + P +S+ CT TY + Q DID G V+N A      P G  V  PG  S L +  R  + LA +         N A+VG+ V YTFT+ NTG+TTL G+ ++
Sbjct: 1339 DQDGDDLADVGETIDYTFTVTNTGNVTLTGIAVDDPKVG-AVTCPTGP----VTPGASVECTATYTVTQDDIDAGSVTNVATATGTTPGGGDVTSPGDDSTLPVDDRGALRLAKDAVLADEDSDNLADVGETVNYTFTVTNTGATTLTGVSID 1486          
BLAST of mRNA_Ecto-sp13_S_contig5605.15937.1 vs. uniprot
Match: UPI0018DDCFEE (DUF11 domain-containing protein n=1 Tax=Chelativorans sp. J32 TaxID=935840 RepID=UPI0018DDCFEE)

HSP 1 Score: 100 bits (250), Expect = 1.140e-21
Identity = 62/164 (37.80%), Postives = 90/164 (54.88%), Query Frame = 1
Query:    1 DNDGDGDCDPGEGVEYVIFVQNTGTITMSGLQVSDGLLGESLDCDESPAGGYLAPKSSITCTGTYQINQGDIDLGHVSNTAIVNAVEPDGTAVEEPGGSLLSLPRRPEISLAVETCTFTGSDANRA-EVGQGVAYTFTMKNTGSTTLIGLDVNSGFLDQALVGV 489
            DNDGDG  D GE + Y   V+NTGT+TM+G+ V+D LL  + +   +P    LAP    T T TY   Q DID G V NTA      PDG  +E P  +++  P +      V+T T    D +   ++G+ ++Y+F ++NTG+ T+ G+ VN   L  A + V
Sbjct: 1761 DNDGDGLLDLGETITYSFRVENTGTVTMTGVTVNDPLLANA-NISVTPGPQTLAPGGVATFTATYTPTQADIDAGRVENTATGVGTPPDGPPIESPPDTVVVPPDQTPGLTIVKTGTLNDLDGDGLLDLGETISYSFRVENTGTVTMTGVTVNDPLLANANIAV 1923          
BLAST of mRNA_Ecto-sp13_S_contig5605.15937.1 vs. uniprot
Match: UPI001295408B (choice-of-anchor D domain-containing protein n=1 Tax=Rhizobium meliloti TaxID=382 RepID=UPI001295408B)

HSP 1 Score: 99.4 bits (246), Expect = 3.560e-21
Identity = 61/165 (36.97%), Postives = 92/165 (55.76%), Query Frame = 1
Query:    1 DNDGDGDCDPGEGVEYVIFVQNTGTITMSGLQVSDGLLGESLDCDESPAGGYLAPKSSITCTGTYQINQGDIDLGHVSNTAIVNAVEPDGTAVEEPGGSLLSLP-RRPEISLAVETCTFTGSDANRA-EVGQGVAYTFTMKNTGSTTLIGLDVNSGFLDQALVGV 489
            D+DGDG  DPGE + +   VQNTGT+TM+G+ V+D +L  +     +P    LAP  + T T TY   Q +ID G V NTA      P G   E P  +++  P + P +S+ V+T T   SD +   ++G+ ++Y+F ++NTG  T+  + VN   L  A + V
Sbjct:  548 DSDGDGLLDPGETINFSFRVQNTGTLTMTGVTVNDPML-TNAGISVTPGPQTLAPGGTATFTATYAPTQAEIDAGEVENTATATGTPPSGPPTESPPDTVIVPPDQAPRLSI-VKTGTLNDSDGDGLIDLGETISYSFRVQNTGPVTMTNVTVNDPLLTNAGISV 710          
BLAST of mRNA_Ecto-sp13_S_contig5605.15937.1 vs. uniprot
Match: UPI00041C684E (DUF11 domain-containing protein n=6 Tax=Rhizobium meliloti TaxID=382 RepID=UPI00041C684E)

HSP 1 Score: 99.4 bits (246), Expect = 3.980e-21
Identity = 61/165 (36.97%), Postives = 92/165 (55.76%), Query Frame = 1
Query:    1 DNDGDGDCDPGEGVEYVIFVQNTGTITMSGLQVSDGLLGESLDCDESPAGGYLAPKSSITCTGTYQINQGDIDLGHVSNTAIVNAVEPDGTAVEEPGGSLLSLP-RRPEISLAVETCTFTGSDANRA-EVGQGVAYTFTMKNTGSTTLIGLDVNSGFLDQALVGV 489
            D+DGDG  DPGE + +   VQNTGT+TM+G+ V+D +L  +     +P    LAP  + T T TY   Q +ID G V NTA      P G   E P  +++  P + P +S+ V+T T   SD +   ++G+ ++Y+F ++NTG  T+  + VN   L  A + V
Sbjct: 1507 DSDGDGLLDPGETINFSFRVQNTGTLTMTGVTVNDPML-TNAGISVTPGPQTLAPGGTATFTATYAPTQAEIDAGEVENTATATGTPPSGPPTESPPDTVIVPPDQAPRLSI-VKTGTLNDSDGDGLIDLGETISYSFRVQNTGPVTMTNVTVNDPLLTNAGISV 1669          
BLAST of mRNA_Ecto-sp13_S_contig5605.15937.1 vs. uniprot
Match: A0A849HKK8_9MICO (DUF11 domain-containing protein n=2 Tax=Knoellia sp. DB2414S TaxID=2730921 RepID=A0A849HKK8_9MICO)

HSP 1 Score: 98.6 bits (244), Expect = 7.480e-21
Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = 1
Query:   25 DPGEGVEYVIFVQNTGTITMSGLQVSDGLLGES-LDCDESPAGGYLAPKSSITCTGTYQINQGDIDLGHVSNTAIVNAVEPDGTAVEEPGGSLLSLPRRPEISLAVETCTFTGSDANRAEVGQGVAYTFTMKNTGSTTLIGLDVNSGFL 468
            D G+ V Y I V+NTGT+T+  + ++D  LG + + CD       LAP +S TC+  Y + QGDID G V NTA V    PDGT V+    + + LP    ++L+        +D N  + G  + YTFT+ NTG+TTL  + ++   L
Sbjct: 3820 DAGDTVTYTITVENTGTVTLDPVLITDAKLGVADVACDGQSR---LAPGASATCSFRYVLTQGDIDAGGVDNTASVEGAGPDGTVVDYEDVARVDLPATNAVTLSKSASAVVDNDGNGPDAGDTITYTFTVTNTGATTLAPVTISDSRL 3965          
BLAST of mRNA_Ecto-sp13_S_contig5605.15937.1 vs. uniprot
Match: UPI001AECB244 (DUF642 domain-containing protein n=7 Tax=Rhizobium meliloti TaxID=382 RepID=UPI001AECB244)

HSP 1 Score: 97.1 bits (240), Expect = 2.550e-20
Identity = 60/165 (36.36%), Postives = 91/165 (55.15%), Query Frame = 1
Query:    1 DNDGDGDCDPGEGVEYVIFVQNTGTITMSGLQVSDGLLGESLDCDESPAGGYLAPKSSITCTGTYQINQGDIDLGHVSNTAIVNAVEPDGTAVEEPGGSLLSLP-RRPEISLAVETCTFTGSDANRA-EVGQGVAYTFTMKNTGSTTLIGLDVNSGFLDQALVGV 489
            D+DGDG  DPGE + +   VQNTGT+TM+G+ V+D +L  +     +P    LAP  + T T TY   Q +ID G V NTA      P G   E P  +++  P + P +S+ V+  T   SD +   ++G+ ++Y+F ++NTG  T+  + VN   L  A + V
Sbjct: 1578 DSDGDGLLDPGETINFSFRVQNTGTLTMTGVTVNDPML-TNAGISVTPGPQTLAPGGTATFTATYAPTQAEIDAGEVENTATATGTPPSGPPTESPPDTVIVPPDQAPRLSI-VKIGTLNDSDGDGLIDLGETISYSFRVQNTGPVTMTNVTVNDPLLTNAGISV 1740          
BLAST of mRNA_Ecto-sp13_S_contig5605.15937.1 vs. uniprot
Match: UPI000FD72903 (choice-of-anchor D domain-containing protein n=1 Tax=Rhizobium meliloti TaxID=382 RepID=UPI000FD72903)

HSP 1 Score: 95.5 bits (236), Expect = 7.780e-20
Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 1
Query:    1 DNDGDGDCDPGEGVEYVIFVQNTGTITMSGLQVSDGLLGESLDCDESPAGGYLAPKSSITCTGTYQINQGDIDLGHVSNTAIVNAVEPDGTAVEEPGGSLLSLPRRPEISLAVETCTFTGSDANRA-EVGQGVAYTFTMKNTGSTTLIGLDVNSGFLDQALVGV 489
            D+DGDG  D GE + Y   VQNTGT++M+G+ V+D LL  +     +P    LAP  + T T TY   QGDID G V NTA      P G  +E P  +++  P +       +T T   SD +   + G+ V+Y+F ++NTG+ T+  + V+   L  A + V
Sbjct:  398 DSDGDGLIDLGETISYSFRVQNTGTVSMTGVTVNDPLL-TNAGISVTPGPQTLAPGGTATFTATYTPTQGDIDAGRVENTATGTGTPPSGPPIESPPDTVVVPPDQTPALTIEKTGTLNDSDGDGLLDPGETVSYSFLVRNTGTVTMTNVTVDDPLLANAGLSV 560          
BLAST of mRNA_Ecto-sp13_S_contig5605.15937.1 vs. uniprot
Match: A0A7X0GFS0_9MICC (Putative repeat protein (TIGR01451 family) n=2 Tax=Arthrobacter sp. AZCC_0090 TaxID=2735881 RepID=A0A7X0GFS0_9MICC)

HSP 1 Score: 94.4 bits (233), Expect = 2.050e-19
Identity = 58/154 (37.66%), Postives = 88/154 (57.14%), Query Frame = 1
Query:    1 DNDGDGDCDPGEGVEYVIFVQNTGTITMSGLQVSDGLLGESLDCDESPAGGYLAPKSSITCTGTYQINQGDIDLGHVSNTAIVNAVEPDGT-AVEEPGGSLLSLPRRPEISLAVETCTFTGSDANR-AEVGQGVAYTFTMKNTGSTTLIGLDVN 456
            D++G+G  D GE + Y I   NTG++T+S +QVSD  +  +L+C   P+G  LAP +++TCTG+Y + Q DID G V NTA      PDG+ A   PG + +       +S   +T     ++ N  A+ G+ +AYT   KN GS T+  + V+
Sbjct:  669 DSNGNGLADAGETINYTITTTNTGSVTVSNVQVSDPKI-PTLNCTP-PSGSTLAPGAAMTCTGSYVVTQADIDSGSVKNTATATGTLPDGSPAPSTPGSATVPANTSGHLSTT-KTAVLNDTNGNGLADAGESIAYTTVTKNDGSATINNVTVS 819          
BLAST of mRNA_Ecto-sp13_S_contig5605.15937.1 vs. uniprot
Match: A0A7Z0D8G2_9ACTN (Putative repeat protein (TIGR01451 family) n=1 Tax=Naumannella cuiyingiana TaxID=1347891 RepID=A0A7Z0D8G2_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 2.250e-19
Identity = 54/157 (34.39%), Postives = 88/157 (56.05%), Query Frame = 1
Query:    1 DNDGDGDCDPGEGVEYVIFVQNTGTITMSGLQVSDGLLGESLDCDESPAGGYLAPKSSITCTGTYQINQGDIDLGHVSNTAIVNAVEPDGTAVEEPGGSLLSLPRRPEISLAVETCT-FTGSDANRAEVGQGVAYTFTMKNTGSTTLIGLDVNSGFL 468
            D DGDG  + GE ++Y   V+NTG++T++ + V+D  +G ++ C  +     L P   +TCT +Y ++Q D+D G V NTA  +   P G AV+       ++PR   I L  +  T    +++NR + G  + YTFT+ NTG+T++  L V+   L
Sbjct: 3058 DVDGDGRIESGERIDYTFVVRNTGSVTLTEVGVNDPKVG-AVTCPNTT----LDPGQEVTCTASYMLSQADVDSGEVENTATASGTPPLGVAVKATDTETTTVPREATIVLDKQAGTPVDANNSNRLDAGDKIDYTFTITNTGTTSVTDLAVDDSLL 3209          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5605.15937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQK6_ECTSI8.520e-2947.40Transcriptional regulator, AraC family with Parall... [more]
UPI001CC142F11.140e-2138.56DUF11 domain-containing protein n=1 Tax=Nocardioid... [more]
UPI0018DDCFEE1.140e-2137.80DUF11 domain-containing protein n=1 Tax=Chelativor... [more]
UPI001295408B3.560e-2136.97choice-of-anchor D domain-containing protein n=1 T... [more]
UPI00041C684E3.980e-2136.97DUF11 domain-containing protein n=6 Tax=Rhizobium ... [more]
A0A849HKK8_9MICO7.480e-2137.58DUF11 domain-containing protein n=2 Tax=Knoellia s... [more]
UPI001AECB2442.550e-2036.36DUF642 domain-containing protein n=7 Tax=Rhizobium... [more]
UPI000FD729037.780e-2036.59choice-of-anchor D domain-containing protein n=1 T... [more]
A0A7X0GFS0_9MICC2.050e-1937.66Putative repeat protein (TIGR01451 family) n=2 Tax... [more]
A0A7Z0D8G2_9ACTN2.250e-1934.39Putative repeat protein (TIGR01451 family) n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5605contigEcto-sp13_S_contig5605:4913..5973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score102.8
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog935840.JAEQ01000019_gene2142
Model size489
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.TIGRFAM conserved repeat domain
EggNOG OGs1R5G4@1224,2UC86@28211,43MTR@69277,COG1361@1,COG1361@2
Cds size489
COG Functional cat.M
Best tax levelPhyllobacteriaceae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463777.6371214-CDS-Ecto-sp13_S_contig5605:4912..51101681463777.6371214-CDS-Ecto-sp13_S_contig5605:4912..5110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5605 4913..5110 +
1681463777.647561-CDS-Ecto-sp13_S_contig5605:5407..55431681463777.647561-CDS-Ecto-sp13_S_contig5605:5407..5543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5605 5408..5543 +
1681463777.656487-CDS-Ecto-sp13_S_contig5605:5818..59731681463777.656487-CDS-Ecto-sp13_S_contig5605:5818..5973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5605 5819..5973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5605.15937.1prot_Ecto-sp13_S_contig5605.15937.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5605 4913..5973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5605.15937.1

>prot_Ecto-sp13_S_contig5605.15937.1 ID=prot_Ecto-sp13_S_contig5605.15937.1|Name=mRNA_Ecto-sp13_S_contig5605.15937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
DNDGDGDCDPGEGVEYVIFVQNTGTITMSGLQVSDGLLGESLDCDESPAG
GYLAPKSSITCTGTYQINQGDIDLGHVSNTAIVNAVEPDGTAVEEPGGSL
LSLPRRPEISLAVETCTFTGSDANRAEVGQGVAYTFTMKNTGSTTLIGLD
VNSGFLDQALVGV
back to top

mRNA from alignment at Ecto-sp13_S_contig5605:4913..5973+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5605.15937.1 ID=mRNA_Ecto-sp13_S_contig5605.15937.1|Name=mRNA_Ecto-sp13_S_contig5605.15937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1061bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5605:4913..5973+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAACGACGGGGACGGTGACTGCGACCCTGGGGAGGGCGTCGAATACGT CATTTTCGTCCAGAACACGGGCACCATTACGATGAGCGGTTTGCAGGTTT CAGACGGTCTTCTCGGAGAATCATTGGACTGTGACGAGTCACCCGCAGGA GGATACCTAGCACCAAAATCGAGTATAACGTGCACCGGTACCTACCAGGT ATGTGGGAGACCATCCTTGACGTTTATGGCAGTACTGCCGTAGTCCAATG AGCATTCCTCCCGTTGGTCTTCATGGTGACGAGGCACCTGCTTATGGGGA CTGCACCCGGAACTGATAATGCTTACTACCCCAATTGAACCCATCACTTG AAGCTAGAAAGGTATGACCCATTTGTCTGCGAAGCAGCAAGTTCAACTCA TCCAAATACGTGTTTTACCACAGGACCAGGTGAGCCAAGGGCTTACCAGT AATATCCTGTCCACATGAGCGTTCGCTTTTTCTTGAAACCAACAGATCAA TCAGGGCGACATCGACCTAGGACATGTGTCCAACACGGCTATTGTGAATG CCGTAGAACCGGATGGAACTGCCGTAGAGGAACCGGGCGGCTCACTTCTT TCACTGCCTCGTCGTCCTGAGATCAGCCTAGGTAAGGGAAGAATTCTGGT ACCAGGTCGGAGTCCATAAACAAGGTCCATTTGCTTGTACGCTTTACGTG CTTCCATCTTGTTGTCCAGCGAAACCTCGGGCATTCAGCGGGTGATGTTA ATGATACTGGCAGTGAAGCTGCGATGGTTCGCTCTGTCTGTACTGGCGCT ATTTTTTCGCCCCACAAACGTCGGCAATCTTCTTGTTTGCTGCATGCTCG AGAGGAATATCTCACCAAGAGCATGCTCTTTGATCGACCTGTCCCATTCG ATTGAGCAGTCGAGACCTGTACGTTCACCGGAAGCGATGCCAACCGCGCC GAGGTGGGACAAGGGGTAGCCTATACCTTTACGATGAAGAACACGGGATC GACGACTCTCATCGGCCTTGACGTCAACAGCGGGTTCCTCGACCAAGCCC TGGTGGGTGTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5605:4913..5973+

>mRNA_Ecto-sp13_S_contig5605.15937.1 ID=mRNA_Ecto-sp13_S_contig5605.15937.1|Name=mRNA_Ecto-sp13_S_contig5605.15937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5605:4913..5973+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAACGACGGGGACGGTGACTGCGACCCTGGGGAGGGCGTCGAATACGT
CATTTTCGTCCAGAACACGGGCACCATTACGATGAGCGGTTTGCAGGTTT
CAGACGGTCTTCTCGGAGAATCATTGGACTGTGACGAGTCACCCGCAGGA
GGATACCTAGCACCAAAATCGAGTATAACGTGCACCGGTACCTACCAGAT
CAATCAGGGCGACATCGACCTAGGACATGTGTCCAACACGGCTATTGTGA
ATGCCGTAGAACCGGATGGAACTGCCGTAGAGGAACCGGGCGGCTCACTT
CTTTCACTGCCTCGTCGTCCTGAGATCAGCCTAGCAGTCGAGACCTGTAC
GTTCACCGGAAGCGATGCCAACCGCGCCGAGGTGGGACAAGGGGTAGCCT
ATACCTTTACGATGAAGAACACGGGATCGACGACTCTCATCGGCCTTGAC
GTCAACAGCGGGTTCCTCGACCAAGCCCTGGTGGGTGTT
back to top