mRNA_Ecto-sp13_S_contig5605.15936.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5605.15936.1 vs. uniprot
Match: D8LQK5_ECTSI (Transcriptional regulator, AraC family with Parallel beta-helix repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQK5_ECTSI) HSP 1 Score: 294 bits (753), Expect = 2.770e-88 Identity = 158/178 (88.76%), Postives = 166/178 (93.26%), Query Frame = 1
Query: 1 GDSFSCSPRVTILQSNVDAGSMGSTARATALTTLSTPVHGSANTTVTFNREASLSCQANCTYVDSDDTNGPSAGDTISYVFDIENNGTTTVWSMVIDSGFVGPVVCSPPLESLELAPGGKTECTSTYQAN--DLDAGVVTSSVVVSAISPIGDKTARIEEAVEIERESSLAVGKYLSC 528
GDSFSCSP+V ILQSNVDAGSMGSTARATALTTLSTPV GSANTTVTF REASLSCQAN TYVDSDDTNGPS+GD ISYVFDIENNGTTTVWS+VIDSGFVGPVVCSPPLESLEL PGGKTECTSTYQ + +LDAGVVT+SVVVSA SP+GD TARIEE VEIERESSLAVGK+LSC
Sbjct: 1339 GDSFSCSPQVIILQSNVDAGSMGSTARATALTTLSTPVQGSANTTVTFIREASLSCQANGTYVDSDDTNGPSSGDMISYVFDIENNGTTTVWSIVIDSGFVGPVVCSPPLESLELGPGGKTECTSTYQMDQDNLDAGVVTNSVVVSATSPVGDTTARIEEDVEIERESSLAVGKHLSC 1516
BLAST of mRNA_Ecto-sp13_S_contig5605.15936.1 vs. uniprot
Match: A0A427SX95_9PSEU (DUF11 domain-containing protein n=3 Tax=Amycolatopsis TaxID=1813 RepID=A0A427SX95_9PSEU) HSP 1 Score: 105 bits (261), Expect = 3.150e-22 Identity = 86/240 (35.83%), Postives = 124/240 (51.67%), Query Frame = 1
Query: 1 GDSFSCSPRVTILQSNVDAGSMGSTARATALTT--LSTPVHGSANTTVTFNREASLSCQANCTYVDSDDTNGPSAGDTISYVFDIENNGTTTVWSMVIDSGFVGPVVCSPPLESLELAPGGKTECTSTYQA---NDLDAGVVTSSVVVSAISPIGDK-TARIEEAVEIERESSLAVGKYLS-CTD----GVVNAGDILLYSFTVTNTGQTCLAVLSVLDDNAGDVNCAFVANMAGEDMLC 687
G S +C+ + Q++VD+GS+ +TARAT T S T V R +L QA V D NG AGDTI+Y F + N G T+ + +D GPV C P+ S LAPG T C++ A +D+DAG V ++ + SP G T + + +S+++ K +S TD GVV+AGD + Y+FTVTNTG L+ +SV D G V+C + G+ + C
Sbjct: 479 GASATCTATYRLTQADVDSGSVPNTARATGTATDLPDATDDDSVTTPVPVVRALALDKQAGP--VTDVDGNGQDAGDTIAYTFTVTNTGNVTLNPVSVDDPKAGPVSC--PVSS--LAPGESTRCSARPYALTQSDVDAGKVDNTATATGRSPDGGTATGTDSTSTPVTGAASISLTKAVSGVTDVNGNGVVDAGDTVAYTFTVTNTGNVTLSAVSVADPKVGPVSCPVSSLAPGKSVQC 712
BLAST of mRNA_Ecto-sp13_S_contig5605.15936.1 vs. uniprot
Match: UPI001CC142F1 (DUF11 domain-containing protein n=1 Tax=Nocardioides rotundus TaxID=1774216 RepID=UPI001CC142F1) HSP 1 Score: 96.3 bits (238), Expect = 3.700e-19 Identity = 75/240 (31.25%), Postives = 108/240 (45.00%), Query Frame = 1
Query: 1 GDSFSCSPRVTILQSNVDAGSMGSTARATALTTLSTPVH-GSANTTVTFNREASLSCQANCTYVDSDDTNGPSAGDTISYVFDIENNGTTTVWSMVIDSGFVGPVVCSPPLESLELAPGGKTECTSTYQAN--DLDAGVVTSSVVVSAISPIG--------DKTARIEEAVEIERESSLAVGKYLSCTDGVVNAGDILLYSFTVTNTGQTCLAVLSVLDDNAGDVNCAFVANMAGEDMLC 687
GDS C+ + Q++VDAG++ +TA ATA V G + T+ + ++L + D D G+TI Y F + N G TV + + VG V C S +APG ECT+TY D+DAG VT++ + +P G D T + + E A+ DG + G+I+ Y+F VTNTG L + V D G V+C GE M C
Sbjct: 2187 GDSVECTASYVVTQADVDAGTVENTATATANRPDGEAVETGPSTETLPTDPASALMIEKTGVLSDGGDDELADVGETIDYTFKVTNTGNVTVTGIAVSDPKVGTVTCP----SDPVAPGASVECTATYTVTQGDIDAGAVTNTAKATGTAPGGNPVESEPDDNTLPADARADATLEKDGALRDRDG--DGRADVGEIIDYTFVVTNTGTVTLGDIEVRDPKVGQVDCPATTLAPGESMTC 2420
BLAST of mRNA_Ecto-sp13_S_contig5605.15936.1 vs. uniprot
Match: A0A7Z0D8G2_9ACTN (Putative repeat protein (TIGR01451 family) n=1 Tax=Naumannella cuiyingiana TaxID=1347891 RepID=A0A7Z0D8G2_9ACTN) HSP 1 Score: 95.9 bits (237), Expect = 5.210e-19 Identity = 74/228 (32.46%), Postives = 112/228 (49.12%), Query Frame = 1
Query: 1 GDSFSCSPRVTILQSNVDAGSMGSTARATALTTLSTPVHGSANTTVTFNREASLSCQANC-TYVDSDDTNGPSAGDTISYVFDIENNGTTTVWSMVIDSGFVGPVVCSPPLESLELAPGGKTECTSTY--QANDLDAGVVTSSVVVSAISPIGDKT-ARIEEAVEIERESSLAVGKYLSCTD-----GVVNAGDILLYSFTVTNTGQTCLAVLSVLDDNAGDVNCAFV 657
G SF CS T+ Q+++DA + + A A TPV GS +++ +++ VD D + +AGD I+Y FD+ N GT T+ +V+ VG + C +LAPG CT+TY +D+DAG V ++ V+ + P+G A +V ++ L V K S + GV +AGD + Y+FTVTNTG L + + D NC V
Sbjct: 4705 GQSFECSGTYTLTQADLDAAQVVNVADAVGTAPDGTPVSGSDRNVAPVSQDPAITLDKQAGPLVDIDGSGTATAGDQITYTFDVVNTGTVTLREVVVTDPKVG-LDCRTD----DLAPGEPLTCTATYTLSQDDVDAGSVENTASVAGLPPVGPTVGAEDSTSVPLDPAQGLTVDKRASAINDVNGNGVADAGDTIDYTFTVTNTGNVTLTGVELADPLVAIPNCPVV 4927
BLAST of mRNA_Ecto-sp13_S_contig5605.15936.1 vs. uniprot
Match: UPI001FA9C18E (DUF11 domain-containing protein n=1 Tax=Nocardioides sp. SR21 TaxID=2919501 RepID=UPI001FA9C18E) HSP 1 Score: 94.0 bits (232), Expect = 2.220e-18 Identity = 74/240 (30.83%), Postives = 107/240 (44.58%), Query Frame = 1
Query: 1 GDSFSCSPRV-TILQSNVDAGSMGSTARATALTTLSTPVHGSANTTVTFNREASLSCQANCTYVDSDDTNGPSAGDTISYVFDIENNGTTTVWSMVIDSGFVGPVVCSPPLESLELAPGGKTECTS---TYQANDLDAGVVTSSVVVSAISPIG-------DKTARIEEAVEIERESSLAVGKYLSCTDGVVNAGDILLYSFTVTNTGQTCLAVLSVLDDNAGDVNCAFVANMAGEDMLC 687
G S SC+P+ T+LQS+VDA + +TA A V + + A++ ++ D+NGP AGDTI+Y F + N GT T+ + + VGP+ C + LAPG CT T ND+D G V ++ P G T I IE + + VG + +AGD + Y F VTNTG L ++V D G + C A + G + C
Sbjct: 575 GASVSCTPKAYTLLQSDVDAKKIENTATAHGSPPSGPEVTDTDTVNIALAGAAAIEVDKTAGTINDVDSNGPDAGDTITYSFVVTNTGTVTLNPVTVTDPKVGPITCP----ATPLAPGVSVNCTQKTYTLTQNDVDTGKVENTATAHGTPPSGPVVEDTDSTTTPIASLPSIELDKT--VGSIIDGDGNGPDAGDTVKYDFRVTNTGNVTLNPVTVTDPKVGPITCPPGALLPGASVDC 808
BLAST of mRNA_Ecto-sp13_S_contig5605.15936.1 vs. uniprot
Match: A0A7K0CJ27_9ACTN (Uncharacterized protein n=2 Tax=Streptomyces smaragdinus TaxID=2585196 RepID=A0A7K0CJ27_9ACTN) HSP 1 Score: 93.2 bits (230), Expect = 4.330e-18 Identity = 73/218 (33.49%), Postives = 118/218 (54.13%), Query Frame = 1
Query: 1 GDSFSCSPRVTILQSNVDAGSMGSTARATALTTLSTPVHGSANTTVTFNREASLSCQ--ANCTYVDSDDTNGPSAGDTISYVFDIENNGTTTVWSM-VIDSGFVG---PVVCSPPLESLELAPGGKTECTSTYQAN--DLDAGVVTSSVVVSAISPIGDKTARIEEAVEIERES--SLAVGKYLSCTDGVVNAGDILLYSFTVTNTGQTCLAVLSVLD 624
G++ +C+ T++Q+++D GS+ +TA+AT S A+ T+T + L + A T VD+ G T++Y F N G TT+ + +I++ F G P+ S ++ LAPGG T+C++TY+ DLDAG +T++ A +P GD T V+++ + SL + K D V+ AGD + Y FTV NTG+T L ++V D
Sbjct: 2879 GETLTCTAVYTLVQADIDQGSVANTAQATGAGVES----NEASVTLTGEPGSLLELEKSAEPTAVDT-------VGGTVTYTFTARNAGETTLTGLGIIENSFTGTGGPLAVS--CDATTLAPGGSTDCSATYEVTQADLDAGSITNTATARATTPSGDTTLSGSSTVDVDTTAPASLTLAKSAD-PDTVIGAGDTVTYHFTVHNTGRTTLHDIAVAD 3082
BLAST of mRNA_Ecto-sp13_S_contig5605.15936.1 vs. uniprot
Match: A0A3C1FGK2_9ACTN (GRAM_POS_ANCHORING domain-containing protein (Fragment) n=1 Tax=Propionibacteriaceae bacterium TaxID=2021380 RepID=A0A3C1FGK2_9ACTN) HSP 1 Score: 92.8 bits (229), Expect = 4.470e-18 Identity = 72/236 (30.51%), Postives = 110/236 (46.61%), Query Frame = 1
Query: 1 GDSFSCSPRVTILQSNVDAGSMGSTARATALTTLSTPVHGSANTTVTFNREASLSCQANCTYVDSDDTNGPSAGDTISYVFDIENNGTTTVWSMVIDSGFVGPVVCSPPLESLELAPGGKTECTSTYQAN--DLDAGVVTSSVVVSAISP-IGDKTARIEEAVEIERESSLAV----GKYLSCTDGVVNAGDILLYSFTVTNTGQTCLAVLSVLDDNAGDVNCAFVANMAGEDMLC 687
G + SC+ T+ Q+++D GS+ +TA A + PV G +NT T ++ V + +G AGDT+ Y F + N G T+ +VI + + C +LAP T CT +Y D+DAG V + SA +P G TA V I L + G + + V+ GD+L Y+FTVTNTG + +++ D DV+C + GE + C
Sbjct: 170 GVATSCTGTYTLTQADIDNGSVTNTATADGTSPAGDPVSGISNTVNT-----NIVATPGIDLVKTGSASGERAGDTVDYSFTVSNTGNVTLTDLVISDPLISSISCP----QTQLAPTSATVCTGSYTLTQADVDAGSVHNDAEASADTPHSGTVTAADGTDVSIAPGPGLDLVKQAGAVIDVDNNGVDTGDLLPYTFTVTNTGNVTMTSVAIQDPKISDVSCPAGSLAPGETLSC 396
BLAST of mRNA_Ecto-sp13_S_contig5605.15936.1 vs. uniprot
Match: UPI000701BDB3 (DUF11 domain-containing protein n=1 Tax=Aeromicrobium sp. Leaf245 TaxID=1736306 RepID=UPI000701BDB3) HSP 1 Score: 92.0 bits (227), Expect = 1.060e-17 Identity = 85/242 (35.12%), Postives = 119/242 (49.17%), Query Frame = 1
Query: 7 SFSCSP-RVTILQSNVDAGSMGSTARATALTTLSTPVHGSANTTVT--FNREASLSCQANC-TYVDSDDTNGPSAGDTISYVFDIENNGTTTVWSM-VIDSGFVGPVVCSPPLESLELAPGGKTEC---TSTYQANDLDAGVVTSSVVVSAISPIGDK---TARIEEAVEIERESSLAVGKYLSCT----DGVVNAGDILLYSFTVTNTGQTCLAVLSVLDDNAGDVNCAFVANMAGEDMLC 687
S +C P + Q+ +DAG + + A ATAL V G + TVT +RE ++ T D DD PSAGDTI++ +EN G T+ + V+D G V C ES ELAPGG T C T D++AGV+ ++ V+A P GD TA E + + R ++ + K DG V AGD ++Y+FTV NTG L ++V D G V+C A + C
Sbjct: 1073 SVTCGPVSYPVTQAQLDAGEVVNAATATALG--QDGVVGPEDDTVTTSLDREPAVQLTKTAGTVQDLDDDRRPSAGDTITFDLAVENTGNVTLSDVSVVDPLLGGAVAC----ESDELAPGGTTPCGPVTYVLTQADVEAGVLRNTATVTADPPAGDAAKDTAGTETS--LARTATFTLDKQAGAVALGGDGRVGAGDAIIYTFTVRNTGNVALTDVAVTDPLVGVVDCTPDALAPDRSVTC 1306
BLAST of mRNA_Ecto-sp13_S_contig5605.15936.1 vs. uniprot
Match: UPI002025909D (DUF11 domain-containing protein n=2 Tax=Aeromicrobium sp. Leaf245 TaxID=1736306 RepID=UPI002025909D) HSP 1 Score: 92.0 bits (227), Expect = 1.110e-17 Identity = 85/242 (35.12%), Postives = 119/242 (49.17%), Query Frame = 1
Query: 7 SFSCSP-RVTILQSNVDAGSMGSTARATALTTLSTPVHGSANTTVT--FNREASLSCQANC-TYVDSDDTNGPSAGDTISYVFDIENNGTTTVWSM-VIDSGFVGPVVCSPPLESLELAPGGKTEC---TSTYQANDLDAGVVTSSVVVSAISPIGDK---TARIEEAVEIERESSLAVGKYLSCT----DGVVNAGDILLYSFTVTNTGQTCLAVLSVLDDNAGDVNCAFVANMAGEDMLC 687
S +C P + Q+ +DAG + + A ATAL V G + TVT +RE ++ T D DD PSAGDTI++ +EN G T+ + V+D G V C ES ELAPGG T C T D++AGV+ ++ V+A P GD TA E + + R ++ + K DG V AGD ++Y+FTV NTG L ++V D G V+C A + C
Sbjct: 5149 SVTCGPVSYPVTQAQLDAGEVVNAATATALG--QDGVVGPEDDTVTTSLDREPAVQLTKTAGTVQDLDDDRRPSAGDTITFDLAVENTGNVTLSDVSVVDPLLGGAVAC----ESDELAPGGTTPCGPVTYVLTQADVEAGVLRNTATVTADPPAGDAAKDTAGTETS--LARTATFTLDKQAGAVALGGDGRVGAGDAIIYTFTVRNTGNVALTDVAVTDPLVGVVDCTPDALAPDRSVTC 5382
BLAST of mRNA_Ecto-sp13_S_contig5605.15936.1 vs. uniprot
Match: UPI001122A2F9 (GEVED domain-containing protein n=1 Tax=Nocardioides litoris TaxID=1926648 RepID=UPI001122A2F9) HSP 1 Score: 91.7 bits (226), Expect = 1.510e-17 Identity = 77/245 (31.43%), Postives = 112/245 (45.71%), Query Frame = 1
Query: 4 DSFSCSPRVTILQSNVDAGSMGSTARATALTTLSTPVHGSANTTVTFNREASLSCQANCTYV--------DSDDTNGPSAGDTISYVFDIENNGTTTVWSMVIDSGFVGPVVCSPPLESLELAPGGKTECTSTYQAN--DLDAGVVTSSVVVSAISPIGDKTARIEEAVE--IERESSLAVGKYL-----SCTDGVVNAGDILLYSFTVTNTGQTCLAVLSVLDDNAGDVNCAFVANMAGEDMLC 687
DS +C TI Q++VDAGS+ +TA AT TP G+ AN + D D AG+TI+Y F++ N G+ T+ + ++ V V C + LAPG T CT+TY D++AG V ++ P G + + + I + SL+V K + TDG V+AGD + Y+F VTNTG L ++V D AG V C G+ + C
Sbjct: 3534 DSVTCVVVYTITQADVDAGSVVNTATATG-----TPPGGAXXXXXXXXXXXXXXXXANALTLVKRAAAPQDVDGDGRVEAGETIAYTFEVTNRGSQTLTGVAVNDARVAAVSCP----ATTLAPGQGTTCTATYTLTQADVNAGTVINTATAVGTPPFGPQVSSAPSSTTSTIAPQPSLSVDKQAGQVLDTNTDGRVDAGDTIGYTFAVTNTGNVTLTRVAVTDPKAGTVACPTTTLAPGQSITC 3769 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5605.15936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5605.15936.1 >prot_Ecto-sp13_S_contig5605.15936.1 ID=prot_Ecto-sp13_S_contig5605.15936.1|Name=mRNA_Ecto-sp13_S_contig5605.15936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp GDSFSCSPRVTILQSNVDAGSMGSTARATALTTLSTPVHGSANTTVTFNRback to top mRNA from alignment at Ecto-sp13_S_contig5605:842..2362+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5605.15936.1 ID=mRNA_Ecto-sp13_S_contig5605.15936.1|Name=mRNA_Ecto-sp13_S_contig5605.15936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1521bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5605:842..2362+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5605:842..2362+ >mRNA_Ecto-sp13_S_contig5605.15936.1 ID=mRNA_Ecto-sp13_S_contig5605.15936.1|Name=mRNA_Ecto-sp13_S_contig5605.15936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5605:842..2362+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |