mRNA_Ecto-sp13_S_contig5602.15934.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5602.15934.1
Unique NamemRNA_Ecto-sp13_S_contig5602.15934.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5602.15934.1 vs. uniprot
Match: A0A6H5JKJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ9_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.260e-50
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 1 
Query:    1 MSAAAVARCLRAVPAARAARSMVAFSRNNVGGVYQQVPIAPACPQPDLLASVVRQLAGCRVDGIMLHAAAQGDFVPAVPVMEAVNRNARRPKKVSGSK 294
            MSAAAVARCLRAVPA RAARSMVA SRNNVGGVYQQVP+APACPQPDLLAS+VRQL GCRVDGIML+AAAQGDF+P VP MEAVNRNARRPKK +  K
Sbjct:    1 MSAAAVARCLRAVPAVRAARSMVALSRNNVGGVYQQVPVAPACPQPDLLASLVRQLDGCRVDGIMLNAAAQGDFLPVVPAMEAVNRNARRPKKANHGK 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5602.15934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JKJ9_9PHAE1.260e-5086.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5602contigEcto-sp13_S_contig5602:6506..6799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size294
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_003250.1
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463777.4060698-CDS-Ecto-sp13_S_contig5602:6505..67991681463777.4060698-CDS-Ecto-sp13_S_contig5602:6505..6799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5602 6506..6799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5602.15934.1prot_Ecto-sp13_S_contig5602.15934.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5602 6506..6799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5602.15934.1

>prot_Ecto-sp13_S_contig5602.15934.1 ID=prot_Ecto-sp13_S_contig5602.15934.1|Name=mRNA_Ecto-sp13_S_contig5602.15934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MSAAAVARCLRAVPAARAARSMVAFSRNNVGGVYQQVPIAPACPQPDLLA
SVVRQLAGCRVDGIMLHAAAQGDFVPAVPVMEAVNRNARRPKKVSGSK
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mRNA from alignment at Ecto-sp13_S_contig5602:6506..6799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5602.15934.1 ID=mRNA_Ecto-sp13_S_contig5602.15934.1|Name=mRNA_Ecto-sp13_S_contig5602.15934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5602:6506..6799+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGCTGCAGCAGTAGCACGGTGCCTTCGGGCGGTACCCGCGGCAAG
GGCAGCAAGGTCGATGGTGGCTTTCTCTAGAAACAACGTAGGCGGGGTAT
ACCAGCAAGTACCAATAGCACCTGCTTGTCCGCAACCTGACCTGCTGGCG
AGCGTGGTGCGACAGCTTGCTGGGTGCAGAGTTGATGGGATCATGTTACA
TGCAGCTGCCCAAGGGGATTTTGTGCCTGCTGTACCGGTGATGGAAGCAG
TCAACAGAAATGCTCGCCGACCGAAGAAAGTGAGTGGTAGTAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5602:6506..6799+

>mRNA_Ecto-sp13_S_contig5602.15934.1 ID=mRNA_Ecto-sp13_S_contig5602.15934.1|Name=mRNA_Ecto-sp13_S_contig5602.15934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5602:6506..6799+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGCTGCAGCAGTAGCACGGTGCCTTCGGGCGGTACCCGCGGCAAG
GGCAGCAAGGTCGATGGTGGCTTTCTCTAGAAACAACGTAGGCGGGGTAT
ACCAGCAAGTACCAATAGCACCTGCTTGTCCGCAACCTGACCTGCTGGCG
AGCGTGGTGCGACAGCTTGCTGGGTGCAGAGTTGATGGGATCATGTTACA
TGCAGCTGCCCAAGGGGATTTTGTGCCTGCTGTACCGGTGATGGAAGCAG
TCAACAGAAATGCTCGCCGACCGAAGAAAGTGAGTGGTAGTAAA
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