mRNA_Ecto-sp13_S_contig5602.15933.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5602.15933.1
Unique NamemRNA_Ecto-sp13_S_contig5602.15933.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5602.15933.1 vs. uniprot
Match: D7FQY7_ECTSI (Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY7_ECTSI)

HSP 1 Score: 607 bits (1564), Expect = 6.310e-214
Identity = 306/317 (96.53%), Postives = 310/317 (97.79%), Query Frame = 1 
Query:  583 VPATLAFLCLVVHSSTSAAASTCRGGAPSRAFLAHGRRSSALTSSHARSCNPGPTTQEESGHGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLKGGGLMRRLKRLVSGVFRKVRGLPVASTEPKGEGKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNAAHAEARPGQAQQWIYHDDLC 1533
            +PATLAFLCLV HSSTSAAASTC+GGAPSRAFLAHGRRSSALTSS+ARSCNPGPTTQ ESGHGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDL+GGGLMRRLKRLVSGVFRKVRG PV  TEPKGE KNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNA HAEARPGQAQQWIYHDDLC
Sbjct:    1 MPATLAFLCLVAHSSTSAAASTCQGGAPSRAFLAHGRRSSALTSSNARSCNPGPTTQGESGHGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPVPITEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC 317
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5602.15933.1 vs. uniprot
Match: A0A835ZFF1_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF1_9STRA)

HSP 1 Score: 262 bits (670), Expect = 1.670e-78
Identity = 140/255 (54.90%), Postives = 176/255 (69.02%), Query Frame = 1 
Query:  784 ETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGD---GELDLKGG--GLMRRLKRLVSGVFRKVRGLPVASTEPKGEGKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNAAHAEARPGQAQQ-WIYHDDL 1530
            E   L++RGG     S   LFM++ +PG+  D  GD   G+  L     GL +R+KR +S +F   +  P    +  G+GK         G +K  T   HL   +RPG+ANYRIQKEL+EFM NPP+ C+VSVGK+++VWIITI+GA+GTI+ GEKF+LRV FPE YP KPP+VYFLQ PPPP+H+H+YTNGDICLSLL  +DW PNLT  +LALSILSMLSSAKEKR P DN  +A  RPGQ+Q  WIYHD+ 
Sbjct:  123 EQRGLMLRGGGKGSLSKFQLFMQIFIPGYGEDAAGDDGDGKAALTSAQPGLAKRVKRFLSALFSGGKKQPTKGAKG-GKGKG--------GSSKDDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLG-KDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDNF 367
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5602.15933.1 vs. uniprot
Match: A0A0G4GVI6_9ALVE (UBC core domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GVI6_9ALVE)

HSP 1 Score: 222 bits (565), Expect = 2.660e-65
Identity = 108/170 (63.53%), Postives = 133/170 (78.24%), Query Frame = 1 
Query: 1027 KKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNAAHAEARPG-QAQQWIYHDDLC 1533
            KKS GK K   T++HL+  + PGN NYRIQKELKEF+ +PP  C+VSVG N+R WIITI G EGT+Y  E ++L+V FP+EYP  PP+VYFL+  P P+H H+YTNGDICL+LL + DWKP LTV ++AL+ILSMLSSAKEK++P DNAAHAEA PG Q   W+YHDD C
Sbjct:   36 KKSGGKKKADATSNHLKAKWTPGNPNYRIQKELKEFIKSPPPNCRVSVGSNLRAWIITIKGVEGTLYEKETYKLKVVFPDEYPLVPPSVYFLR--PAPRHPHVYTNGDICLNLLGT-DWKPTLTVSAIALAILSMLSSAKEKKIPLDNAAHAEAPPGGQQHNWMYHDDKC 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5602.15933.1 vs. uniprot
Match: A0A0G4GQN8_VITBC (UBC core domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GQN8_VITBC)

HSP 1 Score: 221 bits (562), Expect = 8.370e-65
Identity = 101/156 (64.74%), Postives = 128/156 (82.05%), Query Frame = 1 
Query: 1069 HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNAAHAEARPG-QAQQWIYHDDLC 1533
            HL +++RPG+ NYRIQKELK+F+  PPD C+++VG NIRVWIIT++G EGT+Y GEK+RL++ FP EYP KPP +YFLQ  P P+H H+Y+NGDICL+LL + DWKP LTV S+ALSILSMLSSAKEK+LP DNA+HA+ + G Q   W+YHDD C
Sbjct:   54 HLRRSFRPGHVNYRIQKELKDFLTTPPDHCEIAVGSNIRVWIITLTGVEGTLYEGEKYRLKIVFPPEYPLKPPIIYFLQ--PTPRHPHVYSNGDICLNLLGT-DWKPTLTVASVALSILSMLSSAKEKKLPLDNASHADLKAGGQQHNWMYHDDKC 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5602.15933.1 vs. uniprot
Match: W7U274_9STRA (Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U274_9STRA)

HSP 1 Score: 217 bits (553), Expect = 5.040e-62
Identity = 116/252 (46.03%), Postives = 163/252 (64.68%), Query Frame = 1 
Query:  781 LETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLKGGGLMRRLKRLVSGVFRKVRGLPVASTEPKGEGKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNAAHAEARPGQAQ-QWIYHDDLC 1533
            L T     RGG+ +  SL    MR      +R           GG +  R+KR + G+     G        +   ++ +      G+  G     HL K +R GNAN+R+QKEL+E++ANP +  +V+VG NIRVW++T++GA+GTI+AGEK++L+ +FP +YP+KPP+VYFLQ  PPP+H+H+YTNGDICL+LL  RDW+PN+T   LALSILSMLSSA+EK++P+DN  HA+  PG+ Q  W+YHDD C
Sbjct:   78 LITLLAQKRGGALQSSSLLGRIMRAWRGSAKR-----------GGSIHGRIKRFL-GLLWNAAGSSAGHDVKRSTIRSGSLGGVGGGRLGGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQ--PPPRHEHVYTNGDICLNLLG-RDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5602.15933.1 vs. uniprot
Match: A0A7S1TYR4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYR4_9STRA)

HSP 1 Score: 214 bits (545), Expect = 8.250e-62
Identity = 104/153 (67.97%), Postives = 125/153 (81.70%), Query Frame = 1 
Query: 1072 LEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNAAHAEARPGQAQQ-WIYHDD 1527
            L K  + GN  YRIQKEL+EF+ NPP  CKVSVG NIRVW +T++GAE T+Y GE+++LRV+FP  YPTKPP+VYFL+  PPPKH H+YTNGDICLSLL  +DW+PNLT  SLALSILSMLSSA+EKRLP DNA HA++ PG+ Q  W+YHDD
Sbjct:   91 LGKRVKRGNPLYRIQKELREFVDNPPPNCKVSVGDNIRVWTVTLTGAEDTLYEGEEYKLRVTFPTGYPTKPPSVYFLK--PPPKHPHVYTNGDICLSLLG-KDWRPNLTASSLALSILSMLSSAREKRLPNDNAQHADSPPGKPQDGWMYHDD 240
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5602.15933.1 vs. uniprot
Match: A0A7S2R2N4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2N4_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.550e-58
Identity = 103/176 (58.52%), Postives = 128/176 (72.73%), Query Frame = 1 
Query: 1009 KNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNAAHAEARPGQAQQ-WIYHDDLC 1533
            K V  KKK  GK+  A    H+ K  +  N NYRIQ+ELKEF+ +PP   KV+VGKNIRVWIIT+ GA+ TIY G+KFRLRV FP +YPT PP+VYFLQ  P P+H+H+YTNGDICLSLL  +DW+P +T  S+A+SILS+LS A+ K LP DNA +   +PG  Q  W+YHDD C
Sbjct:   40 KPVVAKKKPAGKSAAAV---HIAKELKSNNPNYRIQRELKEFLKSPPPNLKVNVGKNIRVWIITLIGAKNTIYDGDKFRLRVQFPADYPTSPPSVYFLQ--PTPRHEHVYTNGDICLSLLG-KDWRPTMTAQSIAMSILSILSGAQRKSLPMDNARNCLNKPGAKQDDWVYHDDNC 209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5602.15933.1 vs. uniprot
Match: A0A7S4RNY0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNY0_9STRA)

HSP 1 Score: 206 bits (523), Expect = 3.060e-57
Identity = 99/156 (63.46%), Postives = 121/156 (77.56%), Query Frame = 1 
Query: 1069 HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNAAHAEARPGQAQQ-WIYHDDLC 1533
            HL    +  + NYRIQKEL+ F+ +PP    V+VGKNIRVWI+TI+GA  TIY GEK+RLR+SFP  YPT PP+VYFL  PP PKH+H+YTNGDICLSLL  +DW+P +T  SLA+SILS+LSSA+EK LP DNAAH++ +PG  Q  WIYHDD C
Sbjct:  196 HLSAKLKSNSPNYRIQKELRAFLTSPPPNLSVAVGKNIRVWIVTITGASNTIYEGEKYRLRMSFPSNYPTSPPSVYFL--PPTPKHEHVYTNGDICLSLLG-KDWRPTMTGQSLAVSILSLLSSAREKSLPMDNAAHSQNKPGGNQDNWIYHDDNC 348
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5602.15933.1 vs. uniprot
Match: A0A7S4A863_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A863_9STRA)

HSP 1 Score: 203 bits (517), Expect = 9.730e-57
Identity = 118/253 (46.64%), Postives = 160/253 (63.24%), Query Frame = 1 
Query:  778 ALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLKGGGLMRRLKRLVSGVFRKVRGLPVASTEPKGEGKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNAAHAEARPGQAQQ-WIYHDDLC 1533
            A+ T AL V GG++   SL       L+ G     GG G L  +  G++R+  R+   +    +      T P  + K VA KKK +  A+ +      +          RI +EL +F+ NPPD CKVSVGKN+ VWI+T++GAEGTI+AGEK++LRVSFP +YPT PP+ YFL+  P P+H H+YTNGDICL+LL +  W+P +TV  L+LSILSMLSSAK K +P+DNA HA + PG+ Q+ W+YHDD C
Sbjct:   86 AMHTRALRVSGGANAT-SLAPEAKAGLLDG-----GGGGSLATRLFGVIRKTVRMTLRLLGFGKDGGDEDTAPATK-KKVAAKKKRRSPARASPAQRQAQ----------RISRELTDFVENPPDGCKVSVGKNLNVWIVTMTGAEGTIFAGEKYKLRVSFPADYPTSPPSCYFLE--PTPRHPHVYTNGDICLNLLGN-GWRPTITVAQLSLSILSMLSSAKTKGIPQDNAVHAASAPGKPQEGWMYHDDSC 318
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5602.15933.1 vs. uniprot
Match: A0A6U3E3N1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3E3N1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.220e-56
Identity = 95/165 (57.58%), Postives = 126/165 (76.36%), Query Frame = 1 
Query: 1042 KAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNAAHAEARPGQAQQ-WIYHDDLC 1533
            K+K      H++K  +  + NYRIQ+ELK F+++PP   KV VGKNIRVWI+T+SGA+ TIY GE F+LR++FP  YPT PP+VYFL  P  P H+H+YTNGDICLSLL  +DW+P +T  S+A+SILS+LSSA+ K LP DNA H++ +PG+ Q+ W+YHDDLC
Sbjct:   42 KSKSTLANLHVKKELKATSPNYRIQRELKSFLSDPPPNLKVKVGKNIRVWIVTMSGAKDTIYEGETFQLRIAFPAAYPTVPPSVYFLP-PNIPLHEHVYTNGDICLSLLG-KDWRPTMTAQSIAVSILSILSSAQSKSLPMDNARHSQNKPGEYQKDWVYHDDLC 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5602.15933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQY7_ECTSI6.310e-21496.53Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus si... [more]
A0A835ZFF1_9STRA1.670e-7854.90Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A0G4GVI6_9ALVE2.660e-6563.53UBC core domain-containing protein n=1 Tax=Chromer... [more]
A0A0G4GQN8_VITBC8.370e-6564.74UBC core domain-containing protein n=1 Tax=Vitrell... [more]
W7U274_9STRA5.040e-6246.03Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidace... [more]
A0A7S1TYR4_9STRA8.250e-6267.97Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2R2N4_9STRA2.550e-5858.52Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4RNY0_9STRA3.060e-5763.46Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4A863_9STRA9.730e-5746.64Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6U3E3N1_9STRA1.220e-5657.58Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5602contigEcto-sp13_S_contig5602:227..5582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score607.4
Seed ortholog evalue3.7e-171
Seed eggNOG ortholog2880.D7FQY7
Preferred nameUBC18
Model size1852
KEGG rclassRC00064,RC00141
KEGG koko:K01446,ko:K10688,ko:K13963,ko:K19589,ko:K20182
KEGG ReactionR04112
KEGG Pathwayko04120,ko04138,ko05146,map04120,map04138,map05146
Hectar predicted targeting categorychloroplast
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
Exons8
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0427@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme
Ec32 orthologEc-09_003260.1
EC2.1.1.297,2.3.2.25
Cds size963
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5602.15933.1prot_Ecto-sp13_S_contig5602.15933.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5602 543..5009 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463777.279565-UTR-Ecto-sp13_S_contig5602:226..5421681463777.279565-UTR-Ecto-sp13_S_contig5602:226..542Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5602 227..542 -
1681463777.3724356-UTR-Ecto-sp13_S_contig5602:5009..55821681463777.3724356-UTR-Ecto-sp13_S_contig5602:5009..5582Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5602 5010..5582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463777.2917507-CDS-Ecto-sp13_S_contig5602:542..6011681463777.2917507-CDS-Ecto-sp13_S_contig5602:542..601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5602 543..601 -
1681463777.3009198-CDS-Ecto-sp13_S_contig5602:961..10351681463777.3009198-CDS-Ecto-sp13_S_contig5602:961..1035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5602 962..1035 -
1681463777.3103313-CDS-Ecto-sp13_S_contig5602:1322..13961681463777.3103313-CDS-Ecto-sp13_S_contig5602:1322..1396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5602 1323..1396 -
1681463777.320426-CDS-Ecto-sp13_S_contig5602:1865..20101681463777.320426-CDS-Ecto-sp13_S_contig5602:1865..2010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5602 1866..2010 -
1681463777.3309739-CDS-Ecto-sp13_S_contig5602:2600..26651681463777.3309739-CDS-Ecto-sp13_S_contig5602:2600..2665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5602 2601..2665 -
1681463777.3450367-CDS-Ecto-sp13_S_contig5602:3189..33081681463777.3450367-CDS-Ecto-sp13_S_contig5602:3189..3308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5602 3190..3308 -
1681463777.3536253-CDS-Ecto-sp13_S_contig5602:3968..42151681463777.3536253-CDS-Ecto-sp13_S_contig5602:3968..4215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5602 3969..4215 -
1681463777.3619695-CDS-Ecto-sp13_S_contig5602:4829..50091681463777.3619695-CDS-Ecto-sp13_S_contig5602:4829..5009Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5602 4830..5009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5602.15933.1

>prot_Ecto-sp13_S_contig5602.15933.1 ID=prot_Ecto-sp13_S_contig5602.15933.1|Name=mRNA_Ecto-sp13_S_contig5602.15933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=321bp
MVGVPATLAFLCLVVHSSTSAAASTCRGGAPSRAFLAHGRRSSALTSSHA
RSCNPGPTTQEESGHGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFR
RDKGGDGELDLKGGGLMRRLKRLVSGVFRKVRGLPVASTEPKGEGKNVAT
KKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVG
KNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPK
HQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNA
AHAEARPGQAQQWIYHDDLC*
back to top

mRNA from alignment at Ecto-sp13_S_contig5602:227..5582-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5602.15933.1 ID=mRNA_Ecto-sp13_S_contig5602.15933.1|Name=mRNA_Ecto-sp13_S_contig5602.15933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5356bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5602:227..5582- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCAAAGATGATCTTGCAGAGAGGCAAAGTGCCACTGCTGTATGCATGC
GAAGACACCCTCCCTACATGTAGGTCTAATGCATACAAAGGTTGGTTGCG
AGTGGAATCATAGTAAGGAATAGAGAGGGGAGCAACAAATGATAGCGGCA
GGCAGAGATCACGACCACAGGCTTTTATATTTGGCCACACGACCGAAGCA
CCCCCACCAGATCACGCCTAAAGGGCAGTCTCTGGTTAAGGCACTTGACG
TTTGCACTCTCGCTGCTGCTGGCGGTGCTAGGCGCCGAACACGTGGTTCT
CGCCGGGAAACTTGAGGTCGCTGCTCGTGGGTGCAAGCAGGGCGAGTGTG
TTCGCTCAGCAGCAACAGGGTTGTCTCAAGAGTATCCGACGAGAACACAC
AGCAGTGAGACAACAACGTTGTTGGGGTAGAACCGATGTACAACAGGGAC
ATGGAGAAATGTTTTCCTTGCTTCACGAAGTACTGCAACACGTGTGCTTG
ACAACACCGCCGCTGCTGTTCTTGTTCTCCTCGCACCTCTCCTGCCAATC
ATGTGACAGATACAACGACCAACATGGTGGGCGTGCCTGCAACGTTGGCG
TTCCTGTGTCTGGTCGTACATTCCTCAACATCGGCCGCCGCTTCTACCTG
TCGCGGAGGAGCTCCTTCAAGAGCTTTCCTCGCCCACGGCAGGCGGTCTT
CGGCCCTGACTAGCTCTCACGCTCGGTCATGTAACCCTGGCCCAACAACG
CAGGTAGGATTGCATTTTCTCTTGGCGAGGGCAGCCTTGTTCCTACAATA
TGCTGATTGTCTTTTGTCCAAGGCTGTTCTGTTGGGTTGCGTGTTGCCAT
GGGGCTTTGATGTCAGGTGCTATGAATGTCGGGAGATGACTTACTCGCGG
TCTTATGTCAGGGCTCCTATCTTTCGCAGGTTCGCCCGTTTTGCAAGGGC
TGCAACACGACGTTGGAAACATGTCTCCGTCCTACATACACTGCTTGACA
GTGTTGTCCAGAGTAATGCCGCTAGCTCCATGTAAATTGTTGTTGGAGAA
TTTTCCATGCAACTCCCAGTGCCATTGCGTCACTCCATTCCCAAGCACAC
TTTTTCTGATCTTGTTAACATTTGTTGTGCGCCGACTTCCAGGAGGGGAA
CTCCGATATCCCGTAGTGTATGGTTCGTCAACTTTGCTTCACGCGTAAAC
TTTGACCACGACGAAACAGACTCTCCTATTTTGGGGAACTTGGCTCATGC
ACGACACAAGCTGACGATGGATCGGCTTCTTGACTCGAGGGACATGGACG
CGTAGTTTGCTCAACGGTTGGACACATCATGACTACCACCCCCTCCTTGT
GTCCCCCTTCACATCAGGAAGAGTCTGGTCATGGCGAGGACGCATTAGAA
ACGTTTGCCTTGGTTGTGAGGGGAGGAAGCGACGAGGATCCATCCCTCAC
TACGCTCTTTATGCGAGTCCTAATGCCAGGCTTTAGACGAGACAAGGGCG
GGGACGGGGAGTTGGACTTGAAAGGAGGTGGGCTGATGCGAAGGCTGAAG
CGTTTGGTGTCCGGGGTGTTCCGGAAAGTGCGGGGGTTGCCGGTCGCGAG
CACTGAACCCAAAGGTGAGGAGAGTACTGCGATGACACTTTGAACGGAAT
TTTTGACCTTCGGGCCAACTAGGTACGGGCAGCCTCCCGGGGGCGTTCGC
ATCGTATATGTGTTAAGAAGAAATATATACACGCACAGAAAGACTACCCA
TTCGAGATATACCCACAGTCTATATGTACAATAACTGCGCTTATATTCCC
ATTGTATGCATGAATCAAAGATGTCTACGACCTGGTGGAGAAAAATACGC
ACGGGATGACTAGTTGCTGGAGTACCCTGTCTTCTGGCTTGATCTATCCG
CGTAGCTGACGCATTAGAGCAAGCGATTTGCGTTTGTAGTCGGCGGGGTA
GGGTGTTGTTCGCAGCGTAGGTACGCGAGAGGGTTTTTGAATTTTGGTCG
ACCGTGCGCCCAGCTGATTGCAGGTGGTGCTGCCTAACCCTCTACTGCTC
TCTACAAATTCGGCTTGATGATTCCTGAGCCCTCATTTTGATCTCTATCA
CGTCTCTGCACAGCTATTTAACTCACCTGACCTGCCTGGCGCGCGGATGC
ACGTCGGAATTCTGGTGCAAGGGAATTGTCAAATGTCGCTCTACATGAGC
TAACACATCATTGAGGCGAGACGTTTTCACCGAGGCGCTAATGTAGTCCG
ATCGTGTTATATTTCACCTGTAAGGTGAGGGGAAAAACGTAGCGACCAAG
AAAAAGAGCAAGGGAAAAGCTAAGGGGGCAACAACTACATCCCATCTCGA
GAAGACGTACCGTCCAGGGAACGCCAACTATCGGATACAGAAGGTATGCA
CTCGTACGCACCCACCCAAGCATCGCGCAGCGCGTTCGTCTCGCTGCGTC
GTGTGGCGATGTTGACGTAGCACTTGCAAAGATGATGGGGAATCGCCCCG
AGTTCTGAGCACGAGCTTGACAATGTCGTTCTTGCAGTGTTTTGTTCCCG
CGCGGTACGCGCTCCCTGCTTGGCTGAGCAGCTGTCGAAGTAGACAACTT
TCATCGTGTGGGACGTCTGAAAAGTCGGTGACCGCCTGAATGAATAAGGA
GAATATTCGTCCAACAGGGTTGGTTCATGCGATACGTACTACTCCGAGGT
ATCTATCCAAACCAAGAAGCGAAGCAAGGCAAAAGTTGTTGTCGATTGTT
GCTTTTTGGCCGACGATGACGTAGACTCTCCAAGGCGTTCGGTACTACAA
CAAGCCGAATGTCTGCATTCGATACCCCCCACGATAGGACTGATTGCTCT
TAGGCATGAAGCAGCACGGAAATAAAGCTGTCGCTGTTTCCGCCCTGTCT
CACGCCGCTTTATTTAGGAATTGAAAGAATTCATGGCCAACCCGCCTGAT
TGCTGCAAGGTCAGCGTCGGCAAGAACATCAGGTAAGAGGGCAGAGGAGA
GAGGCAGCATGCTCATGGCGCACGACTATGCGTTCATCTAGTAGATTTTC
GGCCCTTCAACATCAATATTTGGTGCACCCCGACCATTGGTTACTTGCGT
TCCGTGGCAAACACCCACCAACATCCGGCTCGATTTGTCGTTGTGCCCAG
CCCTTGTTTCCGACCGCGACTTCTCTCTTCCCGGTATCTGGTCCGTCCCG
TGCATCACGTGTTGATCGACTTGCTCGCGACGAGACGTATGAACCCTCCG
CGAAATGGCGCTTGCACCGCGAGAGAAGGACAATCATGTGACATGTCATG
GCACCCAAGCCTGGTTCTCAAGGACCGTCTTGTAGACTCGTATGTAGCAT
GCTCCACGCACGTTTATCGCGTTGGCCGCGTTTCGGTATATAGGCAGCGG
GTTGGAGGTAGGTATCACTCAAATTATGTTGTGAACTCAACAGGTACATT
TCCTATCTGAACTGAGTACGCGCAACGTCATTCGCATTTTCTTCGTGGAA
ACTCCACGACAAACTTGTTTTACACCACCTGCTGCCATTACCCTCTCTTC
TTGGTGTGGCTGCCTCTTGTAGAGTATGGATCATCACCATCAGCGGGGCG
GAAGGCACCATTTACGCAGGGGAGAAGTTCCGGCTTAGAGTATCCTTCCC
CGAGGAGTACCCTACCAAACCGCCAGCGGTGTACTTCCTGCAATCTCCGC
CGCCGCCGAAACACCAGGTTCGCCGTTGTACATGCTCTCTGCGGTTGATC
AACCGGCCAAGTGTCGTCTTGGTTTCGTTTAATCTACTAATGTTCCACTC
GCGGAAGAGATGTATCAGCGCCCCGCCGCGTGAATGGTATCACATTTCTT
TCGATTGTTCCCAAAGTGACGGTGAAAAACCTGAGCGCTTCAGAAGCAAG
CCACGAGACGTCTTCTGAAGAGTCAGCTCTAGACTGTTCCTTTTCCTGAC
TTCCCCAATATATGTACATGGCGTTGCCAATTTGAAGAAGAACAGCCGTT
ACTGTTGTTGCTCCTACGCCGTCAAGTAAGCAGATCGCGTGACATGCGTT
TTGCTCCTCTGAAGAATATGACTATCCTGCTGTGCAATCGGTTTCACTTT
TGCAATTCCCGCCTATTTCGTGACTTTTGTTGCCCTTTCGGTGGAATTGC
ATCCCATCTCCTGCCGTCACCTGTTTCCCATCGTAGCACATCTACACCAA
CGGAGACATCTGCCTGAGCTTATTGAGCTCCAGAGACTGGAAACCAAATC
TCACCGTCATGTAAGTCACAGGGCAGACCAATGGCTGCGCGCGGCATGTG
CGCTGTACCAATGTGCTCGAGTGCGCAGGCAACTGATGCTCGGCGCCCAA
TTGCGGGATATTCGCACATGTAAAAGATGGTTAAAAGTGTAGGAACATTT
CTTCCCACGCTAGCCTCTTCGAATTTTCACAAAAAGCAGCAGCACAAGAT
GAGCCATGTCGCACGCTTGAATCGGAAGGCGAGTTCTGACATGTGAATCT
CGTATGTGTTCTTCTTCCTTGTTGCTTGCGCGTCAATCATTTGTCAGGTC
TCTGGCGCTCAGCATCCTCAGCATGCTTTCTAGTGCCAAGGAGAAGCGCC
TCCCAGAAGACAACGCTGCACGTGAGTCCGCATGGCGGGCAGTGCGCAAC
AAGTCTTGATAGTTTGATGGCAAATGAACCAAGAATGGCGATGTACATTT
TAGGAAAAGTGTGCAGAAGTGATTTGCGTCTCAAGTACAACCTAGCCTCC
CCGACAAGGCCCTTCCACCACAGGTTTTGCGGGTGCAGTTTGTTGGAGGC
GCTTGTTGTGACTGCCGACCCAAAACTCGTCTTGTGGTTCGCCCGGTAGG
TGCCGATGCTGTCCGTAACCTCCCCTGTCTTTTTGCGGAGCTAAATTTAT
CCCGTGGCAGGGAACTCAAAAAGCTGTGTTGCCCCCCTATTTCTCTGGCA
CTGCTTGCTGTGTCGCGCCTTTTTGATGCAGATGCGGAAGCAAGACCAGG
GCAGGCTCAACAGTGGATATACCACGATGATCTGTGTTAGGTGTGGACCA
CAACACGGCCGGCAGATGCTGCTCATCCCTTTGAGCTTGAGCCAAGATCG
CCATTTCCTGCTCTCGTCTGCTTGTGTAGTCTTGACGTGCTGCTCCTTGA
TGGAATGGCGGTGCGGTGCAGGGGAAATGACTCTTTCGTTGCTGACTGCT
GTGTCCCTAGAACCACTCATTCTAGATATATATGTGGCACTCAAAGACGC
TGCCCGACCTGATATTATGTCGAGTGTATGCATACTTCATCGTGTAATGA
CGTACGTATCTACACCGGACGTCTTTGGTCGAAAAGGCGATCGGGTCGGC
TCTTAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5602:227..5582-

>mRNA_Ecto-sp13_S_contig5602.15933.1 ID=mRNA_Ecto-sp13_S_contig5602.15933.1|Name=mRNA_Ecto-sp13_S_contig5602.15933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5602:227..5582- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGGCGTGCCTGCAACGTTGGCGTTCCTGTGTCTGGTCGTACATTC
CTCAACATCGGCCGCCGCTTCTACCTGTCGCGGAGGAGCTCCTTCAAGAG
CTTTCCTCGCCCACGGCAGGCGGTCTTCGGCCCTGACTAGCTCTCACGCT
CGGTCATGTAACCCTGGCCCAACAACGCAGGAAGAGTCTGGTCATGGCGA
GGACGCATTAGAAACGTTTGCCTTGGTTGTGAGGGGAGGAAGCGACGAGG
ATCCATCCCTCACTACGCTCTTTATGCGAGTCCTAATGCCAGGCTTTAGA
CGAGACAAGGGCGGGGACGGGGAGTTGGACTTGAAAGGAGGTGGGCTGAT
GCGAAGGCTGAAGCGTTTGGTGTCCGGGGTGTTCCGGAAAGTGCGGGGGT
TGCCGGTCGCGAGCACTGAACCCAAAGGTGAGGGGAAAAACGTAGCGACC
AAGAAAAAGAGCAAGGGAAAAGCTAAGGGGGCAACAACTACATCCCATCT
CGAGAAGACGTACCGTCCAGGGAACGCCAACTATCGGATACAGAAGGAAT
TGAAAGAATTCATGGCCAACCCGCCTGATTGCTGCAAGGTCAGCGTCGGC
AAGAACATCAGAGTATGGATCATCACCATCAGCGGGGCGGAAGGCACCAT
TTACGCAGGGGAGAAGTTCCGGCTTAGAGTATCCTTCCCCGAGGAGTACC
CTACCAAACCGCCAGCGGTGTACTTCCTGCAATCTCCGCCGCCGCCGAAA
CACCAGCACATCTACACCAACGGAGACATCTGCCTGAGCTTATTGAGCTC
CAGAGACTGGAAACCAAATCTCACCGTCATGTCTCTGGCGCTCAGCATCC
TCAGCATGCTTTCTAGTGCCAAGGAGAAGCGCCTCCCAGAAGACAACGCT
GCACATGCGGAAGCAAGACCAGGGCAGGCTCAACAGTGGATATACCACGA
TGATCTGTGTTAG
back to top