mRNA_Ecto-sp13_S_contig560.15926.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig560.15926.1
Unique NamemRNA_Ecto-sp13_S_contig560.15926.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig560.15926.1 vs. uniprot
Match: A0A6H5JTR0_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTR0_9PHAE)

HSP 1 Score: 1356 bits (3510), Expect = 0.000e+0
Identity = 886/1087 (81.51%), Postives = 916/1087 (84.27%), Query Frame = 1 
Query:    1 MSSSDASDLVDSDHVEVSSPPTKSSRSRFLERSAGASSSGSRKKPRPKGDNITRPKKRSRLERCGDSSSGVESQGGKGKGKAASRSKATSAAPCAPARSRRGIQKDEVQEGERSSSSWHGSGSEDSXXXXXXXXXXGLRGQWVDGRKDTRKTSRVAASRRRATAKSGGRLDSKRLGARTEASTHRQRPPNSKAPPSRRKSAVGKGPKHADSDSSYACCDDAENSEEEDQEFELEEDMPAVGARGLATRRGGNAARRRTRSASRSIGDTADGTATRSGARKRPIRESSAAGFPQLLESASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDEPVLCRCGARDWRDGTRWIRCDVRGCRTWEHLACAYPGQALEDSGGEEGREEKAHVCGGCQAKGSSTAAAGATRGGRRSLTRSGDDGPTAPSPAHSSTSLSPSVGENTPSGSQRSGGPGSLSVRRSQRVSRLEEMRVRLRKNVVGDEESXXXXXDDPSSPRVGVARSGGVGGDGIDHTEEDGESESDGFWAPEGQVEVSQEYRCRCGAVRGDDARGGAGDGGWVQCHSDACGLWEHAACCVHGCSARSRNATTRRHFCLDCDPKGKKHARWENKMRKKLKRELAAREAAATGRAAXXXXXXXGVATVTGTKKKEAEERFGAMVRGLWMAVVSGNAPLVEEGFREAEGSGVPVRRLVSASPPEAYPDVVSLLAGGRARDGGAGEGTAKDDDKVIEIEAPSASSPFPAGLSLLMVAAGYWKVMADEAAATLNISAGAAXXXXXXXXTVLSGTSCGAQVSNAVPCAEDTPEKAAGAADLGGSTGPLPGTPTLRLPVDEVADTVGS--------ASKTTVCKTATRAVDKTTTTRPGPVATRDARAALAQTPAAGSTKXXXXXXXXXXXXXXAASGANFPPLASDARLAVLRLVLERSRERAVLAVDADGKTALHHAAAVGGAGEVSLLLEGELGGGAALMVSHERLTPLHVAAAAGHAETCASILRALALGPRAAVLEASDAGTSDETALHLACLEGRSACVRVILDE 3237
            MSSSDASDLVDSD  EVS PPTKSSRSRFLERSAGASS GSRKKP  KG+N TRPKKRSRLERCG S+SGVES+GGKGKGKAA RSKA SAA CAPARSRRGI+KD+ QE  RSSSSWHGSGS+ SXXXXXXXXXX  +GQWVDGRKD RKT RVA S R ATAKSGGRLDS R GAR EASTHRQRP NSKAPP RRKSAVGK PK +DSDS YA C DAE+SEEE QE ELEEDMPA G RGLATR GGNAARRR RSASR+  DTADGT TRSGARKRPIR S+AAG PQ LESA  XXXXXXX                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDEPVLCRCGARDW DG+RWI CDV  CRTWEHLACAYP +A EDS GEE RE KAHVCGGCQAKGSSTAAAGATRGGRRSLTR GDDGPTAPSPAHSSTSLSPSVGENTPSGSQRSGG GS  VRRSQRVSRLE MRVRLRKNVVGDE  XXXXX  PSS RVGVARSG VGGDGIDHTEEDGESESDGFWAPEGQVE+SQEYRCRCGA RGDDARGGAGDGGWVQCHSDACGLWEH ACC HGCSA SRNATTRRHFCLDCDPKGKKHARWE+KMRKKLK ++AAREAAA GR  XXXXXXX      GT+K EAEERF AMVRGLWMAVVSGNAPLVEE FREAE S VPVRRLVSA PPEA PDVVSL AGG ARDGGAGEGTAKDDDKVIEIEAPSASSP P GLSLLMVAAGYWKV+ADEAAA L+ +AGAA        TVL  TSC A+VSN VPCAED PEKAAGA DLG ST  LPGTP L LPVD VA TVGS        ASK  VCKTATR VD+TT  RPGPVA  D R    QTP AGST XXXXXXXXXXXXXXAASGA+FP LASD RLAVLRLVLE SRERAVLAVD +G+TALHHAAAVGG GEVSLLLEGELG GAAL++SHE+LTPLHVAA AGH ETC SILRALA GPRAAVLEASDAGTSD TAL+LACLEGRSACVRVILDE
Sbjct:    1 MSSSDASDLVDSDDAEVSPPPTKSSRSRFLERSAGASS-GSRKKPSRKGNNDTRPKKRSRLERCGGSTSGVESRGGKGKGKAARRSKAASAASCAPARSRRGIRKDKFQEEGRSSSSWHGSGSDGSXXXXXXXXXXXRQGQWVDGRKDARKTPRVAGSGRSATAKSGGRLDSTRSGARMEASTHRQRPLNSKAPPPRRKSAVGKDPKCSDSDSLYAGCYDAEDSEEEGQELELEEDMPAAGTRGLATRTGGNAARRRARSASRTTSDTADGTTTRSGARKRPIRRSTAAGLPQPLESAGDXXXXXXXLLSGATVKPSRKHAGSVSGDSQVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDEPVLCRCGARDWLDGSRWILCDVPRCRTWEHLACAYPEEAPEDSRGEERREAKAHVCGGCQAKGSSTAAAGATRGGRRSLTRWGDDGPTAPSPAHSSTSLSPSVGENTPSGSQRSGGAGSPRVRRSQRVSRLEGMRVRLRKNVVGDEXXXXXXXXXPSSSRVGVARSGDVGGDGIDHTEEDGESESDGFWAPEGQVEISQEYRCRCGATRGDDARGGAGDGGWVQCHSDACGLWEHPACCDHGCSAPSRNATTRRHFCLDCDPKGKKHARWEDKMRKKLKPQVAAREAAAPGRXXXXXXXXXXXXXXXGTEKTEAEERFRAMVRGLWMAVVSGNAPLVEEAFREAERSDVPVRRLVSAGPPEACPDVVSLPAGGHARDGGAGEGTAKDDDKVIEIEAPSASSPLPGGLSLLMVAAGYWKVIADEAAAPLDTTAGAASAAAA---TVLPDTSCSAKVSNTVPCAEDRPEKAAGATDLGISTDALPGTPRLPLPVDGVAGTVGSGEHELVATASKAPVCKTATRQVDETTIARPGPVAMTDTRPVRTQTPTAGSTXXXXXXXXXXXXXXXAASGADFPQLASDTRLAVLRLVLEHSRERAVLAVDDEGRTALHHAAAVGGTGEVSLLLEGELGRGAALVMSHEQLTPLHVAAVAGHPETCVSILRALAPGPRAAVLEASDAGTSDGTALNLACLEGRSACVRVILDE 1083
[Close]
BLAST of mRNA_Ecto-sp13_S_contig560.15926.1 vs. uniprot
Match: D7FPN0_ECTSI (HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN0_ECTSI)

HSP 1 Score: 1319 bits (3414), Expect = 0.000e+0
Identity = 867/1094 (79.25%), Postives = 895/1094 (81.81%), Query Frame = 1 
Query:    1 MSSSDASDLVDSDHVEVSSPPTKSSRSRFLERSAGASSSGSRKKPRPKGDNITRPKKRSRLERCGDSSSGVESQGGKGKGKAASRSKATSAAPCAPARSRRGIQKDEVQEGERSSSSWHGSGSEDSXXXXXXXXXXGLRGQWVDGRKDTRKTSRVAASRRRATAKSGGRLDSKRLGARTEASTHRQRPPNS---KAPPSRRKSAVGKGPKHADSDSSYACCDDAENSEEEDQEFELEEDMPAVGARGLATRRGGNAARRRTRSASRSIGDTADGTATRSGARKRPIRESSAAGFPQLLESASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----SSDEPVLCRCGARDWRDGTRWIRCDVRGCRTWEHLACAYPGQALEDSGGEEGREEKAHVCGGCQAKGSSTAAAGATRGGRRSLTRSGDDGPTAPSPAHSSTSLSPSVGENTPSGSQRSGGPGSLSVRRSQRVSRLEEMRVRLRKNVVGDEESXXXXXDDPSSPRVGVARSGGVGGDGIDHTEEDGESESDGFWAPEGQVEVSQEYRCRCGAVRGDDARGGAGDGGWVQCHSDACGLWEHAACCVHGCSARSRNATTRRHFCLDCDPKGKKHARWENKMRKKLKRELAAREAAATGRAAXXXXXXXGVATVTGTKKKEAEERFGAMVRGLWMAVVSGNAPLVEEGFREAEGSGVPVRRLVSASPPEAYPDVVSLLAGGRARDGGAGEGTAKDDDKVIEIEAPSASSPFPAGLSLLMVAAGYWKVMADEAAATLNISAGAAXXXXXXXXTVLSGTSCGAQVSNAVPCAEDTPEKAAGAADLGGSTGPLPGTPTLRLPVDEVADTVGS--------ASKTTVCKTATRAVDKTTTTRPGPVATRDARAALAQTPAAGSTKXXXXXXXXXXXXXXAASGANFPPLASDARLAVLRLVLERSRERAVLAVDADGKTALHHAAAVGGAGEVSLLLEGELGGGAALMVSHERLTPLHVAAAAGHAETCASILRALALGPRAAVLEASDAGTSDETALHLACLEGRSACVRVILDE 3237
            MSSSDASDLVDSD  EVSSPPTKSSRSRFLERSAG                                           KGKAASR KA SAAPCAPAR+RRGI+KD +QE                XXXXXXXXXX  RGQ  DGRKDTRK  RVAASRRRATAKSGGRLDS R GARTEASTHRQRPPNS   KAP  RRKSAVGKGPK ADSDS YA CDDAE+SEEEDQEF LEEDMPA G+RGLAT RGGNAARRRTR+ SR+ GDTA GTATRSGARKRPIR S+AAGFPQLLESAS XXXXXXXX                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     SSDEPVLCRCGARDWRDGTRWIRCDV GCRTWEHLACAYPG+ALED GGEEGREEKAHVCGGCQAKGSSTAAAGATRGGRRSLTR GDDGP+APSPAHSSTSLSP VG+NTPSGSQRS G GS SVRRSQRVSRLE MRVRLRKNVVGDEES     DDPSSPRVGV R GGV GD IDHTEEDGESESDGFWAPEGQVE+SQEYRCRCGA RGDD RGGAGDG WVQCHSDACGLWEHAACC HGCSA SRNATTRRHFCLDCDPKGKKHARWE+KMRKKLKRELAAR+AAA     XXXXXXX  ATVTGTKK EAE+RFGAMVRGLWMAVVSGNAPLVE+ FREAEGS VPVRRLVSA PPEA P+VVSLLAGGRARDGGAG+G AKDDDK IEIEAPSAS P PAGLSLLMVAAGYWKV+ADE AATL++SAGAA        TVL  TSC A+VSN +PCAED PEKAAGAADLGGS  PLPGTPTL LPVD VA TV S        AS   +CKTATR VD+TTT RPG VAT DARA  AQTP A STKXXXXXXXXXXXXXX ASGA+FP LASDARLAVLRLVLERSRERAVL VDA+G+TALHHAAAVGGAGEVSLLLEGELG GAALMVSHERLTPLHVAAAAGH ETC SILRALA GPRAAVLEASDAGTSDETALHLACLEGRSACVRVILDE
Sbjct:    1 MSSSDASDLVDSDDAEVSSPPTKSSRSRFLERSAG-------------------------------------------KGKAASRPKAASAAPCAPARNRRGIRKDYLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGQLADGRKDTRKNPRVAASRRRATAKSGGRLDSTRSGARTEASTHRQRPPNSSSVKAPXPRRKSAVGKGPKRADSDSPYAGCDDAEDSEEEDQEFMLEEDMPAAGSRGLATLRGGNAARRRTRAISRTTGDTAHGTATRSGARKRPIRTSTAAGFPQLLESASDXXXXXXXXLSVATVKPPIKHAGSVSGDSQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSSNSSDEPVLCRCGARDWRDGTRWIRCDVPGCRTWEHLACAYPGEALEDRGGEEGREEKAHVCGGCQAKGSSTAAAGATRGGRRSLTRWGDDGPSAPSPAHSSTSLSPPVGQNTPSGSQRSPGAGSPSVRRSQRVSRLEGMRVRLRKNVVGDEESCSSSNDDPSSPRVGVVRIGGVDGDSIDHTEEDGESESDGFWAPEGQVEISQEYRCRCGATRGDDPRGGAGDGDWVQCHSDACGLWEHAACCDHGCSAPSRNATTRRHFCLDCDPKGKKHARWEDKMRKKLKRELAARQAAAXXXXXXXXXXXXXXATVTGTKKTEAEKRFGAMVRGLWMAVVSGNAPLVEKAFREAEGSDVPVRRLVSAGPPEACPNVVSLLAGGRARDGGAGKGAAKDDDKAIEIEAPSASYPLPAGLSLLMVAAGYWKVIADETAATLDMSAGAASAAAA---TVLPDTSCSAKVSNTLPCAEDRPEKAAGAADLGGSIDPLPGTPTLPLPVDGVAGTVRSGEQELVATASNAPICKTATRPVDETTTARPGLVATTDARAEPAQTPTARSTKXXXXXXXXXXXXXXXASGADFPQLASDARLAVLRLVLERSRERAVLGVDAEGRTALHHAAAVGGAGEVSLLLEGELGRGAALMVSHERLTPLHVAAAAGHPETCVSILRALAPGPRAAVLEASDAGTSDETALHLACLEGRSACVRVILDE 1048
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig560.15926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTR0_9PHAE0.000e+081.51HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FPN0_ECTSI0.000e+079.25HECT domain and ankyrin repeat containing, E3 ubiq... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig560contigEcto-sp13_S_contig560:118..4567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score1344.3
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FPN0
Preferred nameikb-1
Model size3237
KEGG koko:K09258,ko:K10592
KEGG Pathwayko04120,ko04668,map04120,map04668
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0042742,GO:0043207,GO:0050829,GO:0050896,GO:0051704,GO:0051707,GO:0098542
Exons3
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG0666@1,COG5021@1,KOG0504@2759,KOG0939@2759
Ec32 ortholog descriptionHECT
Ec32 orthologEc-16_001360.2
EC2.3.2.26
Cds size3237
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03110,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463776.872288-CDS-Ecto-sp13_S_contig560:117..3181681463776.872288-CDS-Ecto-sp13_S_contig560:117..318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig560 118..318 -
1681463776.8858888-CDS-Ecto-sp13_S_contig560:1206..40101681463776.8858888-CDS-Ecto-sp13_S_contig560:1206..4010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig560 1207..4010 -
1681463776.8962662-CDS-Ecto-sp13_S_contig560:4335..45671681463776.8962662-CDS-Ecto-sp13_S_contig560:4335..4567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig560 4336..4567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig560.15926.1prot_Ecto-sp13_S_contig560.15926.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig560 118..4567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig560.15926.1

>prot_Ecto-sp13_S_contig560.15926.1 ID=prot_Ecto-sp13_S_contig560.15926.1|Name=mRNA_Ecto-sp13_S_contig560.15926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1079bp
MSSSDASDLVDSDHVEVSSPPTKSSRSRFLERSAGASSSGSRKKPRPKGD
NITRPKKRSRLERCGDSSSGVESQGGKGKGKAASRSKATSAAPCAPARSR
RGIQKDEVQEGERSSSSWHGSGSEDSGGSSDEGGGGGLRGQWVDGRKDTR
KTSRVAASRRRATAKSGGRLDSKRLGARTEASTHRQRPPNSKAPPSRRKS
AVGKGPKHADSDSSYACCDDAENSEEEDQEFELEEDMPAVGARGLATRRG
GNAARRRTRSASRSIGDTADGTATRSGARKRPIRESSAAGFPQLLESASD
DDDDDQSLLSGATVKPPRQHAGSVSGDSQAGGGDGATSTLTPFALSDDDD
DCLRNTDSDDDGTAGGSGGGGGGDDVSSNSSDEPVLCRCGARDWRDGTRW
IRCDVRGCRTWEHLACAYPGQALEDSGGEEGREEKAHVCGGCQAKGSSTA
AAGATRGGRRSLTRSGDDGPTAPSPAHSSTSLSPSVGENTPSGSQRSGGP
GSLSVRRSQRVSRLEEMRVRLRKNVVGDEESSSSSNDDPSSPRVGVARSG
GVGGDGIDHTEEDGESESDGFWAPEGQVEVSQEYRCRCGAVRGDDARGGA
GDGGWVQCHSDACGLWEHAACCVHGCSARSRNATTRRHFCLDCDPKGKKH
ARWENKMRKKLKRELAAREAAATGRAATATATASGVATVTGTKKKEAEER
FGAMVRGLWMAVVSGNAPLVEEGFREAEGSGVPVRRLVSASPPEAYPDVV
SLLAGGRARDGGAGEGTAKDDDKVIEIEAPSASSPFPAGLSLLMVAAGYW
KVMADEAAATLNISAGAAGAAGAAVATVLSGTSCGAQVSNAVPCAEDTPE
KAAGAADLGGSTGPLPGTPTLRLPVDEVADTVGSASKTTVCKTATRAVDK
TTTTRPGPVATRDARAALAQTPAAGSTKTAAAAATAVATCTAAASGANFP
PLASDARLAVLRLVLERSRERAVLAVDADGKTALHHAAAVGGAGEVSLLL
EGELGGGAALMVSHERLTPLHVAAAAGHAETCASILRALALGPRAAVLEA
SDAGTSDETALHLACLEGRSACVRVILDE
back to top

mRNA from alignment at Ecto-sp13_S_contig560:118..4567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig560.15926.1 ID=mRNA_Ecto-sp13_S_contig560.15926.1|Name=mRNA_Ecto-sp13_S_contig560.15926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig560:118..4567- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATCATCGGATGCATCAGACCTAGTCGATAGCGACCACGTCGAGGT
ATCGTCACCGCCGACAAAGTCATCCCGAAGCCGATTCCTGGAGCGTTCTG
CGGGTGCTTCTTCGTCTGGGTCGAGGAAAAAACCGAGACCCAAAGGCGAC
AACATTACACGACCCAAGAAAAGATCTCGCCTTGAGCGCTGTGGTGATTC
GAGCTCGGGTGTTGAGAGTCAGGGAGGAAAAGGTAAAACTTGGGGTATGC
ATCGCACGGGGGTGAGAAATGTAGTGTGTGTGCTCTCTTTTTCTCTGATC
TGGGCTCGTCGTGACGGGATGTTAAAACATGACCGCCCGGCTCATCGTCT
AGATCAACTTATACATATTGCCGCCGATTAACACTGCTCCCCCACGCTTT
TCCCATACTATCTATCGTGTACAGGGAGGAGCCAGGATAAAAAGACAAAA
TGAGCACGCGATAAATGTAGACCACATGCGAAAATGGATGGTGGTGTTGC
ATCCAACTCTATCACTGACCTCCTCTGCTGCAACACGTCCCTTTATTTGC
CTCCCAGGCAAAGGCAAGGCCGCGAGCCGCTCGAAGGCAACGTCCGCAGC
ACCATGCGCCCCTGCTAGAAGCAGGCGAGGCATTCAAAAAGATGAGGTTC
AGGAGGGGGAACGCTCTTCTTCTAGCTGGCACGGAAGCGGCAGCGAAGAT
AGCGGTGGTAGCAGCGACGAAGGCGGCGGCGGAGGTCTGCGGGGGCAATG
GGTGGATGGACGGAAGGACACCAGGAAAACTTCTCGGGTCGCCGCAAGTA
GGAGGAGGGCAACCGCCAAATCGGGAGGGCGACTCGACAGCAAGAGATTA
GGCGCGAGAACTGAGGCCAGCACGCACAGGCAACGCCCACCCAACAGCAA
AGCCCCCCCGTCCCGAAGAAAATCAGCGGTCGGGAAAGGTCCCAAGCATG
CTGATTCGGACAGCTCGTACGCTTGCTGCGATGATGCTGAGAACAGCGAG
GAGGAAGACCAGGAGTTCGAGCTCGAGGAAGACATGCCCGCCGTGGGAGC
AAGGGGACTGGCGACGCGGAGGGGAGGCAACGCCGCCCGGCGGCGGACGC
GATCAGCATCACGAAGCATCGGTGACACTGCTGACGGCACAGCTACTCGG
AGCGGCGCGCGAAAGCGCCCGATACGCGAGTCAAGTGCAGCAGGGTTCCC
TCAGCTCTTGGAGTCCGCCAGCGATGATGACGATGATGACCAGAGCCTGC
TAAGCGGGGCCACAGTGAAGCCGCCGAGACAACACGCTGGATCAGTGAGC
GGCGATAGCCAAGCCGGTGGTGGTGATGGCGCGACCTCGACTCTTACCCC
CTTCGCACTCTCGGACGACGACGACGACTGCCTGAGAAACACGGACAGTG
ACGATGATGGCACGGCGGGGGGAAGCGGTGGCGGTGGTGGCGGCGACGAC
GTTAGCAGCAACAGCAGCGACGAGCCCGTGCTGTGCCGGTGCGGCGCGCG
GGATTGGCGGGACGGTACTCGGTGGATCCGCTGCGACGTCCGGGGGTGCA
GGACGTGGGAACACCTGGCCTGCGCGTACCCGGGGCAAGCGCTTGAAGAT
AGCGGCGGAGAGGAAGGGCGTGAGGAAAAGGCCCACGTTTGCGGCGGTTG
CCAAGCGAAGGGGTCATCCACCGCAGCGGCGGGTGCGACTAGAGGGGGAC
GACGCTCCCTGACACGCTCGGGCGATGATGGACCTACGGCGCCGTCACCG
GCGCACTCGTCGACCTCGCTATCGCCCTCTGTTGGCGAAAACACTCCCTC
GGGTAGCCAGCGATCGGGCGGTCCCGGGAGTCTGAGCGTGAGGCGTTCTC
AGCGGGTGTCCAGGCTGGAAGAGATGAGGGTGCGGCTACGGAAGAACGTC
GTCGGGGATGAAGAGTCTTCTTCTAGTTCCAACGACGACCCAAGCTCGCC
ACGTGTCGGCGTGGCAAGGAGCGGTGGTGTCGGCGGGGACGGTATCGACC
ACACGGAAGAAGACGGCGAATCGGAAAGCGACGGGTTCTGGGCGCCCGAG
GGCCAGGTGGAAGTCTCACAAGAGTACCGTTGTCGGTGCGGGGCTGTTCG
TGGGGACGACGCCCGTGGTGGTGCAGGCGACGGGGGCTGGGTGCAGTGCC
ATTCCGATGCGTGTGGGTTGTGGGAACACGCCGCGTGTTGCGTCCACGGG
TGCTCGGCTCGGTCACGAAACGCGACAACCAGGAGGCACTTCTGCCTGGA
CTGCGACCCAAAGGGTAAGAAACACGCCAGGTGGGAGAACAAAATGCGGA
AGAAGCTGAAACGCGAGCTCGCCGCCCGGGAGGCGGCGGCGACGGGACGA
GCAGCAACAGCGACAGCAACTGCTTCAGGCGTGGCGACAGTGACCGGAAC
GAAGAAAAAGGAGGCGGAAGAGCGATTCGGGGCCATGGTTCGGGGGCTCT
GGATGGCGGTTGTTTCCGGGAACGCCCCCCTGGTTGAGGAGGGGTTCCGG
GAAGCGGAAGGGTCGGGTGTTCCTGTGAGACGGTTGGTATCCGCGAGCCC
GCCCGAGGCATATCCGGATGTCGTGTCTTTGCTAGCCGGTGGTCGTGCCC
GCGACGGCGGGGCAGGAGAAGGGACTGCCAAGGACGACGACAAGGTCATC
GAGATCGAAGCCCCGTCGGCAAGCTCCCCTTTCCCGGCTGGTTTGAGCCT
CCTCATGGTCGCCGCGGGCTACTGGAAGGTCATGGCTGACGAGGCGGCGG
CTACGCTCAACATTTCTGCTGGTGCTGCTGGTGCTGCTGGTGCTGCTGTT
GCCACAGTTCTTTCCGGCACCAGTTGCGGCGCACAGGTTAGCAATGCCGT
GCCGTGTGCGGAAGACACGCCGGAAAAGGCAGCTGGGGCGGCAGATCTCG
GGGGTAGTACAGGCCCATTGCCTGGTACCCCAACGCTTCGGTTGCCTGTT
GATGAGGTCGCCGATACTGTCGGGTCTGCAAGCAAGACTACAGTTTGCAA
GACGGCAACACGCGCAGTGGACAAAACGACCACCACACGTCCAGGTCCAG
TCGCTACAAGAGACGCCCGCGCTGCCCTAGCCCAAACTCCCGCCGCGGGA
AGCACCAAAACAGCAGCGGCGGCGGCGACGGCGGTAGCTACTTGCACTGC
TGCTGCCAGCGGGGCGAACTTCCCCCCGCTTGCCAGCGACGCGAGACTGG
CGGTGCTCCGCTTGGTCCTGGAGCGCAGCCGCGAACGAGCGGTGCTCGCC
GTCGATGCCGATGGCAAGACCGCGTTGCACCACGCGGCGGCGGTAGGCGG
GGCCGGCGAGGTGTCCCTTCTTCTGGAAGGGGAGCTAGGCGGGGGAGCGG
CCCTCATGGTGGTGAGTTTTTGTTTTGAACTTGACGGGCAGAGAACCCTG
TACCTGCTATTCTCACGGGAACAACAATAGAGTGGGAGTTGGGAGCTTGC
GTGTAGCGTCCCTGCGGGCAGGCGGATTCACGGTATTGCAACTTTCTGGA
TCGAGTCCTCCCATTGTCTCGTCCATAGGAGATACAAGTGATTTTCCTGT
TGGTGAAAAGTACGAAATGCTTGAAAGCAACACCAACCAGAACGGTTCCC
ATGTTGGCACCCAGTTGGAGAGGGGTTCATTTGGTCTACTTTATCCAGAG
GGGCAAGGCCAAGTGTCTTTAAACGATCTGACCCAAAGCAGAATACCCTG
TTCTTCCTTGACTATACCAATGCCCGCGTTTTTTTTTCTCCGCTGGCTAT
GTTTTCATGTGGGGTACGCATCTTGTGGCAGGCAACCCTCCACTGGGTTC
GCCGAAAGGAACCTTCAGATTAGGACCATACATATCCCTTGCTTCGGGGG
GGTGAGGGGGGTGGGGGGTTCATGTGGCATGAAAATTGTTGCGAACGGTG
TGGATGATCTAGACCCCACGGGGTGTGTTTGTACAACGAGGTCAACTCTA
GGTCGCTGTGTTTGGAGAAGTTGTGGGCCGGTCCCCGGACGCGCCCCAGC
GGAATCATGATCATCAAAAGTTACTTACCGGACACTATCAACGTCATGGC
GCTGTGCGGGGTTAGTAGTCACCGGTAAGCTCTTTTTGCTATTCATACGT
CTCCCTTGGTACCTCTCCGACTAGCATGGGATGTTTCCCGTGCCTTACTC
CTCATCCCTTACATACGTAGTTCCACCAATCATCAAGCGCCACAGACCAC
CAGGCTCCCACCCACGACGCCCCCCCCCCCCCTTCGGCCTTCTCTGCAGT
CCCACGAGCGGCTCACGCCCCTTCACGTCGCCGCGGCCGCCGGCCACGCC
GAGACCTGCGCCTCTATCCTCCGAGCCCTTGCCCTCGGGCCCAGGGCAGC
CGTGCTGGAGGCGAGCGACGCGGGGACTTCGGACGAGACCGCCTTGCACC
TGGCTTGCCTCGAAGGGCGCTCTGCCTGCGTGCGGGTCATTCTGGACGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig560:118..4567-

>mRNA_Ecto-sp13_S_contig560.15926.1 ID=mRNA_Ecto-sp13_S_contig560.15926.1|Name=mRNA_Ecto-sp13_S_contig560.15926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig560:118..4567- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATCATCGGATGCATCAGACCTAGTCGATAGCGACCACGTCGAGGT
ATCGTCACCGCCGACAAAGTCATCCCGAAGCCGATTCCTGGAGCGTTCTG
CGGGTGCTTCTTCGTCTGGGTCGAGGAAAAAACCGAGACCCAAAGGCGAC
AACATTACACGACCCAAGAAAAGATCTCGCCTTGAGCGCTGTGGTGATTC
GAGCTCGGGTGTTGAGAGTCAGGGAGGAAAAGGCAAAGGCAAGGCCGCGA
GCCGCTCGAAGGCAACGTCCGCAGCACCATGCGCCCCTGCTAGAAGCAGG
CGAGGCATTCAAAAAGATGAGGTTCAGGAGGGGGAACGCTCTTCTTCTAG
CTGGCACGGAAGCGGCAGCGAAGATAGCGGTGGTAGCAGCGACGAAGGCG
GCGGCGGAGGTCTGCGGGGGCAATGGGTGGATGGACGGAAGGACACCAGG
AAAACTTCTCGGGTCGCCGCAAGTAGGAGGAGGGCAACCGCCAAATCGGG
AGGGCGACTCGACAGCAAGAGATTAGGCGCGAGAACTGAGGCCAGCACGC
ACAGGCAACGCCCACCCAACAGCAAAGCCCCCCCGTCCCGAAGAAAATCA
GCGGTCGGGAAAGGTCCCAAGCATGCTGATTCGGACAGCTCGTACGCTTG
CTGCGATGATGCTGAGAACAGCGAGGAGGAAGACCAGGAGTTCGAGCTCG
AGGAAGACATGCCCGCCGTGGGAGCAAGGGGACTGGCGACGCGGAGGGGA
GGCAACGCCGCCCGGCGGCGGACGCGATCAGCATCACGAAGCATCGGTGA
CACTGCTGACGGCACAGCTACTCGGAGCGGCGCGCGAAAGCGCCCGATAC
GCGAGTCAAGTGCAGCAGGGTTCCCTCAGCTCTTGGAGTCCGCCAGCGAT
GATGACGATGATGACCAGAGCCTGCTAAGCGGGGCCACAGTGAAGCCGCC
GAGACAACACGCTGGATCAGTGAGCGGCGATAGCCAAGCCGGTGGTGGTG
ATGGCGCGACCTCGACTCTTACCCCCTTCGCACTCTCGGACGACGACGAC
GACTGCCTGAGAAACACGGACAGTGACGATGATGGCACGGCGGGGGGAAG
CGGTGGCGGTGGTGGCGGCGACGACGTTAGCAGCAACAGCAGCGACGAGC
CCGTGCTGTGCCGGTGCGGCGCGCGGGATTGGCGGGACGGTACTCGGTGG
ATCCGCTGCGACGTCCGGGGGTGCAGGACGTGGGAACACCTGGCCTGCGC
GTACCCGGGGCAAGCGCTTGAAGATAGCGGCGGAGAGGAAGGGCGTGAGG
AAAAGGCCCACGTTTGCGGCGGTTGCCAAGCGAAGGGGTCATCCACCGCA
GCGGCGGGTGCGACTAGAGGGGGACGACGCTCCCTGACACGCTCGGGCGA
TGATGGACCTACGGCGCCGTCACCGGCGCACTCGTCGACCTCGCTATCGC
CCTCTGTTGGCGAAAACACTCCCTCGGGTAGCCAGCGATCGGGCGGTCCC
GGGAGTCTGAGCGTGAGGCGTTCTCAGCGGGTGTCCAGGCTGGAAGAGAT
GAGGGTGCGGCTACGGAAGAACGTCGTCGGGGATGAAGAGTCTTCTTCTA
GTTCCAACGACGACCCAAGCTCGCCACGTGTCGGCGTGGCAAGGAGCGGT
GGTGTCGGCGGGGACGGTATCGACCACACGGAAGAAGACGGCGAATCGGA
AAGCGACGGGTTCTGGGCGCCCGAGGGCCAGGTGGAAGTCTCACAAGAGT
ACCGTTGTCGGTGCGGGGCTGTTCGTGGGGACGACGCCCGTGGTGGTGCA
GGCGACGGGGGCTGGGTGCAGTGCCATTCCGATGCGTGTGGGTTGTGGGA
ACACGCCGCGTGTTGCGTCCACGGGTGCTCGGCTCGGTCACGAAACGCGA
CAACCAGGAGGCACTTCTGCCTGGACTGCGACCCAAAGGGTAAGAAACAC
GCCAGGTGGGAGAACAAAATGCGGAAGAAGCTGAAACGCGAGCTCGCCGC
CCGGGAGGCGGCGGCGACGGGACGAGCAGCAACAGCGACAGCAACTGCTT
CAGGCGTGGCGACAGTGACCGGAACGAAGAAAAAGGAGGCGGAAGAGCGA
TTCGGGGCCATGGTTCGGGGGCTCTGGATGGCGGTTGTTTCCGGGAACGC
CCCCCTGGTTGAGGAGGGGTTCCGGGAAGCGGAAGGGTCGGGTGTTCCTG
TGAGACGGTTGGTATCCGCGAGCCCGCCCGAGGCATATCCGGATGTCGTG
TCTTTGCTAGCCGGTGGTCGTGCCCGCGACGGCGGGGCAGGAGAAGGGAC
TGCCAAGGACGACGACAAGGTCATCGAGATCGAAGCCCCGTCGGCAAGCT
CCCCTTTCCCGGCTGGTTTGAGCCTCCTCATGGTCGCCGCGGGCTACTGG
AAGGTCATGGCTGACGAGGCGGCGGCTACGCTCAACATTTCTGCTGGTGC
TGCTGGTGCTGCTGGTGCTGCTGTTGCCACAGTTCTTTCCGGCACCAGTT
GCGGCGCACAGGTTAGCAATGCCGTGCCGTGTGCGGAAGACACGCCGGAA
AAGGCAGCTGGGGCGGCAGATCTCGGGGGTAGTACAGGCCCATTGCCTGG
TACCCCAACGCTTCGGTTGCCTGTTGATGAGGTCGCCGATACTGTCGGGT
CTGCAAGCAAGACTACAGTTTGCAAGACGGCAACACGCGCAGTGGACAAA
ACGACCACCACACGTCCAGGTCCAGTCGCTACAAGAGACGCCCGCGCTGC
CCTAGCCCAAACTCCCGCCGCGGGAAGCACCAAAACAGCAGCGGCGGCGG
CGACGGCGGTAGCTACTTGCACTGCTGCTGCCAGCGGGGCGAACTTCCCC
CCGCTTGCCAGCGACGCGAGACTGGCGGTGCTCCGCTTGGTCCTGGAGCG
CAGCCGCGAACGAGCGGTGCTCGCCGTCGATGCCGATGGCAAGACCGCGT
TGCACCACGCGGCGGCGGTAGGCGGGGCCGGCGAGGTGTCCCTTCTTCTG
GAAGGGGAGCTAGGCGGGGGAGCGGCCCTCATGGTGTCCCACGAGCGGCT
CACGCCCCTTCACGTCGCCGCGGCCGCCGGCCACGCCGAGACCTGCGCCT
CTATCCTCCGAGCCCTTGCCCTCGGGCCCAGGGCAGCCGTGCTGGAGGCG
AGCGACGCGGGGACTTCGGACGAGACCGCCTTGCACCTGGCTTGCCTCGA
AGGGCGCTCTGCCTGCGTGCGGGTCATTCTGGACGAG
back to top