mRNA_Ecto-sp13_S_contig56.15925.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig56.15925.1 vs. uniprot
Match: D8LU30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU30_ECTSI) HSP 1 Score: 451 bits (1159), Expect = 1.610e-148 Identity = 308/383 (80.42%), Postives = 317/383 (82.77%), Query Frame = 1
Query: 199 PKEEKNQSPTLPPERHEDNSSVLDEGDTDANAAGRPRLDLAPSHSATGDEGAVFSPQEASADAGTGADAADVVPGPITTAGATAGTPEESAGCLPGGGVFGSWRRRRRGNRQRRFSDGALASTXXXXXXXXXXXXXXSGPDKMSSNNSGSKSWRSGSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----KVNKPAATALTLEEVEMLATSDWGGGYSNGSARDIWKELTHVGGXXXXXXXXXXXXXXXXXGMLGPAVRLRLRFIPLWDCLADGGGVNGLGALHAAARDGDARLVTSLAHLWQRLSPGSQVLSLPCRRGLTPIQHCIEAGKEDALRELLRGIARDSVRGGGPEGKDSPLHTAVKAGEEGMLKMLLAQSRR 1332
PKEEKNQSPTLPPERHEDNSSVLDEGD DA+AAGRPRLD+APSHSATGDEGA+ S QEASADAGTGADAAD VPGP +TAGAT GTPEESAGCLPGGGVFGSWRR XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXX K NKPAATALTLEEVEMLAT+DWG GY+NGSARDIWKELTHVGGXXXXXXXXXXXXXXXX LGPAVRLRLRFIPLWDCLADG G+NGLGALHAAARDGDARLV SLA LWQ+LSPGSQVLSLPCRRGLTPIQHCIEAGKE+ALRELLRGIARDSVRGGGPEGKDSPLHTAVKAGEEGMLKMLLAQSRR
Sbjct: 78 PKEEKNQSPTLPPERHEDNSSVLDEGDADADAAGRPRLDVAPSHSATGDEGAIISAQEASADAGTGADAADAVPGPSSTAGATTGTPEESAGCLPGGGVFGSWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGKAVAAAAGKKANKPAATALTLEEVEMLATNDWGEGYANGSARDIWKELTHVGGXXXXXXXXXXXXXXXXGSRLGPAVRLRLRFIPLWDCLADGAGMNGLGALHAAARDGDARLVASLARLWQKLSPGSQVLSLPCRRGLTPIQHCIEAGKENALRELLRGIARDSVRGGGPEGKDSPLHTAVKAGEEGMLKMLLAQSRR 460
BLAST of mRNA_Ecto-sp13_S_contig56.15925.1 vs. uniprot
Match: A0A6H5KTK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK8_9PHAE) HSP 1 Score: 325 bits (832), Expect = 3.550e-102 Identity = 247/298 (82.89%), Postives = 256/298 (85.91%), Query Frame = 1
Query: 199 PKEEKNQSPTLPPERHEDNSSVLDEGDTDANAAGRPRLDLAPSHSATGDEGAVFSPQEASADAGTGADAADVVPGPITTAGATAGTPEESAGCLPGGGVFGSWRRRRRGNRQRRFSDGALASTXXXXXXXXXXXXXXSGPDKMSSNNSGSKSWRSGSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---KVNKPAATALTLEEVEMLATSDWGGGYSNGSARDIWKELTHVGGXXXXXXXXXXXXXXXXXGM-LGPAVRLRLRFIPLWDCLADGGGVNGLGALHAAARDGDARLVT 1080
PKEEKNQSPTLPPER+EDNSSV DEGD DANAAGRPRLDLAPS SA G EGA+ SPQEASADAGTGADAAD VPGP +TA TPEESAGCLPGGGVFGSWRRRRRG LA XXXXXXXXXXXXXX GP+KMS+N+SGSKS R XXXXXXXXXXXXXXXXXXXXXXXXXXXXX + NKPAATALTLEEVEMLATSDWGGGY+NGSARDIWKELTHVGGXXXXXXXXXXXXX G LGPAVRLRLRFIPLWDCLADGGGVNGLGALHAAARDGDARLV+
Sbjct: 278 PKEEKNQSPTLPPERYEDNSSVRDEGDADANAAGRPRLDLAPSDSAAGGEGAIISPQEASADAGTGADAADAVPGPSSTASXXXXTPEESAGCLPGGGVFGSWRRRRRGXXXXXXXXXGLAXXXXXXXXXXXXXXXXXGPEKMSNNSSGSKSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRANKPAATALTLEEVEMLATSDWGGGYANGSARDIWKELTHVGGXXXXXXXXXXXXXTGAGGSRLGPAVRLRLRFIPLWDCLADGGGVNGLGALHAAARDGDARLVS 575
BLAST of mRNA_Ecto-sp13_S_contig56.15925.1 vs. uniprot
Match: A0A835YV06_9STRA (Ankyrin repeat-containing domain protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV06_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 7.340e-11 Identity = 53/148 (35.81%), Postives = 70/148 (47.30%), Query Frame = 1
Query: 952 LGPAVRLRLRFIPLWDCLA----------------------DGGGVNGLGALHAAARDGDARLVTSLAHLWQRLSPGSQVLSLPCRRGLTPIQHCIEAGKEDALRELLRGIARDSVRGGGPEGKDSPLHTAVKAGEEGMLKMLLAQSR 1329
+ PAVRLRLRFIPL DC++ G N A+H AA GD RLV +L + ++PG +VLSL GLT + H I G +R LL+ + G G DSP H AV A E +L + A ++
Sbjct: 87 VAPAVRLRLRFIPLRDCVSAVQSDAPAHHAPIVIGPSLSQSQQGATN---AIHRAAMAGDVRLVMALVAMLDAVAPGGKVLSLRSGEGLTALDHLIRGGHVGPVRTLLKTYGHLCMEGV-ESGHDSPFHNAVTAAEPAVLPHIAATAK 230
BLAST of mRNA_Ecto-sp13_S_contig56.15925.1 vs. uniprot
Match: A0A835ZIX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIX4_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 9.480e-11 Identity = 53/148 (35.81%), Postives = 70/148 (47.30%), Query Frame = 1
Query: 952 LGPAVRLRLRFIPLWDCLA----------------------DGGGVNGLGALHAAARDGDARLVTSLAHLWQRLSPGSQVLSLPCRRGLTPIQHCIEAGKEDALRELLRGIARDSVRGGGPEGKDSPLHTAVKAGEEGMLKMLLAQSR 1329
+ PAVRLRLRFIPL DC++ G N A+H AA GD RLV +L + ++PG +VLSL GLT + H I G +R LL+ + G G DSP H AV A E +L + A ++
Sbjct: 252 VAPAVRLRLRFIPLRDCVSAVQSDAPAHHAPIVIGPSLSQSQQGATN---AIHRAAMAGDVRLVMALVAMLDAVAPGGKVLSLRSGEGLTALDHLIRGGHVGPVRTLLKTYGHLCMEGV-ESGHDSPFHNAVTAAEPAVLPHIAATAK 395 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56.15925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig56.15925.1 >prot_Ecto-sp13_S_contig56.15925.1 ID=prot_Ecto-sp13_S_contig56.15925.1|Name=mRNA_Ecto-sp13_S_contig56.15925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=444bp MVAATAERVLNPATQAMVAAAAAAALVGRGGGSGASCRQERASSSSRLKGback to top mRNA from alignment at Ecto-sp13_S_contig56:42796..46008+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig56.15925.1 ID=mRNA_Ecto-sp13_S_contig56.15925.1|Name=mRNA_Ecto-sp13_S_contig56.15925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56:42796..46008+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56:42796..46008+ >mRNA_Ecto-sp13_S_contig56.15925.1 ID=mRNA_Ecto-sp13_S_contig56.15925.1|Name=mRNA_Ecto-sp13_S_contig56.15925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1332bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56:42796..46008+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |