mRNA_Ecto-sp13_S_contig56.15924.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56.15924.1
Unique NamemRNA_Ecto-sp13_S_contig56.15924.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56.15924.1 vs. uniprot
Match: A0A6H5KTK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK8_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 3.230e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 2 
Query:  149 MSEVVKAGVLEVTVVQATGVDLLAATSTLSRTARRKPALVARVTVDGTTKSGQPAQRSHHPVWFPAQPLNLGDMNASSSTSRA 397
            MSEVVKAGVLEVTVVQATGVDLLAATSTLSRTARRKPALVARVTVDGTTKSGQPAQRSHHPVWFPAQPLNLGDMNASSSTSRA
Sbjct:    1 MSEVVKAGVLEVTVVQATGVDLLAATSTLSRTARRKPALVARVTVDGTTKSGQPAQRSHHPVWFPAQPLNLGDMNASSSTSRA 83
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BLAST of mRNA_Ecto-sp13_S_contig56.15924.1 vs. uniprot
Match: D8LU30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU30_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 2.700e-6
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 2 
Query:  149 MSEVVKAGVLEVTVVQATGVDLLAATSTLSRT 244
            MSEVVKAGVLEVTVVQATGVDLL ATSTLSRT
Sbjct:    1 MSEVVKAGVLEVTVVQATGVDLLVATSTLSRT 32
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56.15924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTK8_9PHAE3.230e-42100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU30_ECTSI2.700e-696.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56contigEcto-sp13_S_contig56:39707..42599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size398
Hectar predicted targeting categoryother localisation
Exons3
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.976919-UTR-Ecto-sp13_S_contig56:39706..397761681463775.976919-UTR-Ecto-sp13_S_contig56:39706..39776Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig56 39707..39776 +
1681463775.9883034-UTR-Ecto-sp13_S_contig56:41912..419901681463775.9883034-UTR-Ecto-sp13_S_contig56:41912..41990Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig56 41913..41990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463776.0073879-CDS-Ecto-sp13_S_contig56:41990..420851681463776.0073879-CDS-Ecto-sp13_S_contig56:41990..42085Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56 41991..42085 +
1681463776.0253434-CDS-Ecto-sp13_S_contig56:42445..425991681463776.0253434-CDS-Ecto-sp13_S_contig56:42445..42599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56 42446..42599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56.15924.1prot_Ecto-sp13_S_contig56.15924.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56 41991..42599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56.15924.1

>prot_Ecto-sp13_S_contig56.15924.1 ID=prot_Ecto-sp13_S_contig56.15924.1|Name=mRNA_Ecto-sp13_S_contig56.15924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
MSEVVKAGVLEVTVVQATGVDLLAATSTLSRTARRKPALVARVTVDGTTK
SGQPAQRSHHPVWFPAQPLNLGDMNASSSTSRA
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mRNA from alignment at Ecto-sp13_S_contig56:39707..42599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56.15924.1 ID=mRNA_Ecto-sp13_S_contig56.15924.1|Name=mRNA_Ecto-sp13_S_contig56.15924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56:39707..42599+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGAGAGAAGTGTGAAGTGGAGGGAGCCATCGCGCCTTCGAGAGAGGAG
CGGGAACACGAGAGATACAAGTGAGGAAAACTCTGTCGCGAACGTGTCAC
ACGTGCCCATGCGTGATACGAAACTATGTAAGGATATCGCCTCTATGGTT
ACGTTATGGCACAAGCAATGCAGGGGTTGGACACTGTATAGTTTACGTGA
AAGGCTGAGCTTTACTTTCGGACCCTCTTCCTTCGGCAGCACTCCTTTCC
CGTTCGAAGCAACAGCCGCGTGTTGCTGCAGCCAGCAGTAGATCGGACAG
ACTTTGACCGACACGCCAGAAGCAGCAGCGTCCAATCCAACACCAGTTTT
GATCAGACCGACGCACGTCCACAGCGCGTAATCACCGCGTACGTATGCAA
ACGCGCAAGGTCATCGTCGGCGTAGGCCACCGGAAAGGGAACGTATTACA
ACAAAAACGGGAAAGGCGCGCAGGGTCTCCCTTGTTGGACCATCGCCCCC
TTCGGCACTTACCGTACAACAGCAGTACAGCAGTACCGTAGCGTACAGGC
GTTCGTTCTTGGTCCGGTCCGGGATAGTAGAAGAGGAAAAAACAAGACGT
ACGGCAGGGACGAACGAGCGACGGTTTAGATTAGCATAGTCTGCATGGCG
ATTTATAGTGGTTGCTCTCACAGCTATCCCCTGCCGCTCCGCCGTGCATC
CCTCCGTGTACTGCGCGCGACGTCCAATCGTCCAATCCTCGTCATAAGGC
GGGATGTGATGTCTGGGTGGCGGAAATGGAAGGTCTGGAGACATAACCAG
AACCGTTACCCATCCCGACATATGTACTGGACGTCTAGACGAAAGAAGTT
TGCTGTGCGAATATAGAGAGAATCAGAGATAGGATAGGATCACTGCATCG
CGTACTTGTCGGCGCCTTTCGGCATGCTAATTTCACTTGTGGTCAACACA
TGATTGAACCGACCTTGTTCATACCATCGTGTTCTACAACAGCAGGACGA
TTGATTGCAATTTCATGACCGGGATTTTTTTCTCTCTCGCATCACATGTA
AACTAAGAGCGAAACCGCACGTGACTGTGTGTTTGCTTGGCACAGTGAAG
ATCGTACTGTATCATCGCCACGGTAGCCAGCCAGCCCACTACAGTAGGAA
GAATGGTATTCTACAACTGTACCGCAGTTCTGTGCTCGACTAAACACTTC
ACAGCTAATGCAAAACGCATGTACCGGTACCACCCTACTTGAAAATATGG
CGACCATGGCGATGGTACACATCTTTATCCGCAATAGTCCTTATTTCTTG
GACGGATTGGTATTTGTCACTGCGTACGGTAGTCTCCGAGTGGCGCCTCA
GCGGTACAGCAGCAGTACTTCAGGCGCGCATGAAGGCCACCACAGATAGG
TGTGCTGGGTTGGTGCCCGGGGTTGTACAGCAGCAGTGGTAAAGTGGCCG
GAGAAGTCGATGGTGGGATCCGGTGAAATGCGGTTCCAACTGGGGGGGGG
GGGGGGGGGGGGGGGCCCTCCCGCTTTACCGCTTTTTTTCTTTTTTTCCA
AATAAATCAACCTATGTTTCCCACCCCACACCTTCCAAAGTTCNNNNNNN
NNNGTTGGGGGCGGGGAGGAAAGAGAGAGAGAGAGAGAAAAGAGGAGGGG
GAAAGGGGGGGGGGGGAGAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGCTCTCACGGCTCTCGTCGTTAACCCATTTTTTACAAT
CTAGCCGACAACGTTGTTTCCTGCAGCCACTGCAGAAGTTTCACGGAGGC
GTGGCTTGATGGGCGCGTTGCAACGCAGCAGTTTCGGTGGAAATACTTCG
CGCGAGTAGCAATGGGCATGTCTCTCGGTCGCGTGTGGACAAGCGTTGGG
GCGGCAAGTTTTTCGGTCCAGGGGGAGTCAGGTGGAGTTGAACGCGTTTC
ACCTGTCGAGAATGCGTCTGATCTCTGCTGCCCAAATGTGTGGTTGTATC
GTCTATGCCCGCATCTACATCGCATGGCCCACAGTAACCGACTGACCACT
GAGCAGACTGCAGTCTCTCCTTCTTCTTAGAAAAGCGTGCCCTGGCCACC
CAATGTTTTGGCGGGATGTCACAACACCAACACTGCTGCTACTGCTGCTA
CTGCTCCTGCTGCTGCTACTGCTCCTGCTGCTGTATCGTCCTCCTCGTCT
ATGCAGGAAGCGGTCGAACGGGCGCCGCTTTTTCCCATCCAGTCGGGTGA
CTCCCACACACTCTGGAGGGGCAGGAGGCTGACGATGAGCGAGGTGGTGA
AGGCCGGCGTGTTGGAGGTAACCGTGGTACAGGCTACCGGAGTCGACCTT
CTTGCGGCAACGTCCACCCTGTCTCGAACGTGAGTCACGACTGCTGTGTC
CCAGGCAGCAGACAAAGGACCCACCCCCCACGCGGTTAACCCGCGAGGGT
CCACCCGTGTTGTGCAGCGGCCACGTTTGCTCTTGTGTTACTCGGCGTTT
CCTTCAACCTTGTATTACAGTTTTCGGAGTCACACACCCTCGTCTGCAGT
ATTCGATAGTAGCGCATCATTGTGGTGCTCGGCACAGCAACTTTCAACGG
ACAGGTTCGATCCCCCACTCGTACAGGCGACTACCCATGTGTCAATCCTC
CTTACCCCTGCTCTCTCTGCATCTCCGTCTATCCCCTTTGCCTTCCTCCC
TCGTTCTGGTACCCCCGACAACGCATTACAAATATGTAGCGCTCGTCGAA
AACCCGCACTCGTGGCACGCGTCACCGTGGATGGCACAACAAAGTCCGGG
CAGCCGGCCCAGCGGAGCCATCATCCGGTGTGGTTTCCGGCGCAGCCGCT
CAACCTCGGCGACATGAACGCCTCATCGTCGACCTCCCGCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56:39707..42599+

>mRNA_Ecto-sp13_S_contig56.15924.1 ID=mRNA_Ecto-sp13_S_contig56.15924.1|Name=mRNA_Ecto-sp13_S_contig56.15924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56:39707..42599+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGAGGTGGTGAAGGCCGGCGTGTTGGAGGTAACCGTGGTACAGGC
TACCGGAGTCGACCTTCTTGCGGCAACGTCCACCCTGTCTCGAACCGCTC
GTCGAAAACCCGCACTCGTGGCACGCGTCACCGTGGATGGCACAACAAAG
TCCGGGCAGCCGGCCCAGCGGAGCCATCATCCGGTGTGGTTTCCGGCGCA
GCCGCTCAACCTCGGCGACATGAACGCCTCATCGTCGACCTCCCGCGCT
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