mRNA_Ecto-sp13_S_contig56.15921.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig56.15921.1 vs. uniprot
Match: D7G541_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G541_ECTSI) HSP 1 Score: 756 bits (1953), Expect = 7.440e-248 Identity = 389/417 (93.29%), Postives = 398/417 (95.44%), Query Frame = 3
Query: 189 MAKKKLELRFAAREKFSLMDKGTRETTAAKSIQRVKAEADRQATQLWEEGFTYAPAMTGDDTETPPSAPRVVFENALTEEGFLGFARDLDLLGLPFATHTGLISLFRRYASKLTKGAALQARAKGLFSWLCKSSGVHRLGKEDIAKLLDGLGLPRVSDEDALPYTYADGMWDSNAFCRHLHDNQWITEVAGSDESVTSGNRLSGSADGASTDSRQRDSDESSTSSDRSELASAVSDSSVSTEDSTPWADRFVGMKKDGFEKAIQELACTVRLPGEACECEGCSTRRVREAKLEHQEGPTMDKEMERLRINAHANEMHTSWATVRLYFEVLAPNAAKLFAAKANASQDIFGSPWFSHTSRNLLFENDQMLREIFLTLVGRQGDRDALNDRGGGSRNQSEDTTVLKGLRADCRWRSLLS 1439
MAKKKLELRFAAREKFSLMDKGTRETTAAKSIQRVKAE +RQATQLWEEGFTYAPAM GDDTETPPSAPRVVFENALTEEGFLGFARDLD+L LPFATHTGLISLFRRYASKLTKGAALQARAKGLFSWLCKSSGVHRLGKEDIAKLLDGLGLPR+SDEDALPYTYADGMWD NAFCRHLHDNQWITEVA DESVTSGNRLSGSADGAS DSRQRDSDESSTSSD SELASAVSDSSVST+DSTPWADRFVGMKKDGFEKAIQELACTVRLPGEACECEGCSTRRVREAKLEHQEG TMDKEMERLRI HA E+HTSWATVRLYFE+LAPNAAKLFAAKANASQDIFGSPW S TSRNLLF+NDQML+EIFLTLVGRQGDRD+LNDR GGSRNQ EDTTVLKGLRADCRW LS
Sbjct: 1 MAKKKLELRFAAREKFSLMDKGTRETTAAKSIQRVKAEVERQATQLWEEGFTYAPAMNGDDTETPPSAPRVVFENALTEEGFLGFARDLDILALPFATHTGLISLFRRYASKLTKGAALQARAKGLFSWLCKSSGVHRLGKEDIAKLLDGLGLPRISDEDALPYTYADGMWDYNAFCRHLHDNQWITEVADGDESVTSGNRLSGSADGASADSRQRDSDESSTSSDPSELASAVSDSSVSTDDSTPWADRFVGMKKDGFEKAIQELACTVRLPGEACECEGCSTRRVREAKLEHQEGTTMDKEMERLRIKMHAKELHTSWATVRLYFEILAPNAAKLFAAKANASQDIFGSPWSSPTSRNLLFDNDQMLQEIFLTLVGRQGDRDSLNDREGGSRNQLEDTTVLKGLRADCRWVFSLS 417
BLAST of mRNA_Ecto-sp13_S_contig56.15921.1 vs. uniprot
Match: D7G540_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G540_ECTSI) HSP 1 Score: 415 bits (1066), Expect = 7.640e-127 Identity = 294/535 (54.95%), Postives = 300/535 (56.07%), Query Frame = 1
Query: 3589 MEAVTPLTVSLDGVLLFIGDTNIFPMLSFENILATAAKEIEHMASTVAEDASKSTGESQPGTKQDELSTKTTAGLDADGFVRVCIHLLRDNFLVKEMGFQHRVEALTVEQRDKEWAQRLPGATEHCDLLARLKGWMEHYRLPSRMSLFKKETFAIGCPTETRSRKATSTGGTRRVRTRPAGLVPRASPCLIDLWTGKIVARNALEVSPLSPSGKAIKVDDSADRAILNQIADMVIDLAAPVPQSTTASPAAPGDVSVGGGGTTLLQPGADPTLPLGREDVPEATPVGKSDSIPGKLTPPARAVCDNSDDGAHGSDTDDFSSPGISPKETDDKPREGTTADLASGDNRSECSEKTVSGGKVEDISDTSPSLVKNQNTPAIERGKTAEQADWKGQVTAREIAKKAKAQQLRVSNTVVRILGQIHPDNVPTTSRPPTQRLDV-GASAEDRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTPDDFTTLASDHPSQQLLKAGKELMRQKRPEQAVVVWGQAAEILRNTIE 5190
MEAVTPLTVSLDGVLLFIGDTNIFPML FENILATAAKEIEHMAST AEDASK+TGE+ PG QDELST+TTAGLDADGFVRVCIHLLRDNFLVKEMGFQHRVEALTVEQRDKEWAQRLPG T VDDSADRAILNQIADMV+DLAA VPQSTTASPAAPGDVSVGGGGTTL QPGAD TL LG E GK AEQADWKGQVTARE+AKKAKAQQLR+SNTVVRILGQIHPDNVP SRPPTQR D GASAEDRV XXXXXXXXXXXXXXXX VTPDDFTTLASDHPSQQLLKAGKELMRQKRPEQAVVVWGQAAEILRNTIE
Sbjct: 1 MEAVTPLTVSLDGVLLFIGDTNIFPMLGFENILATAAKEIEHMASTEAEDASKNTGENLPGINQDELSTRTTAGLDADGFVRVCIHLLRDNFLVKEMGFQHRVEALTVEQRDKEWAQRLPGTT----------------------------------------------------------------------------------------------VDDSADRAILNQIADMVVDLAALVPQSTTASPAAPGDVSVGGGGTTLPQPGADQTLLLGGE-------------------------------------------------------------------------------------------------------GKKAEQADWKGQVTAREVAKKAKAQQLRISNTVVRILGQIHPDNVP--SRPPTQRPDTSGASAEDRVEVDGTKEDENEVASSSSXXXXXXXXXXXXXXXXPAPTVTPDDFTTLASDHPSQQLLKAGKELMRQKRPEQAVVVWGQAAEILRNTIE 336
BLAST of mRNA_Ecto-sp13_S_contig56.15921.1 vs. uniprot
Match: D7G539_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G539_ECTSI) HSP 1 Score: 398 bits (1022), Expect = 4.910e-123 Identity = 234/243 (96.30%), Postives = 239/243 (98.35%), Query Frame = 1
Query: 7252 MMKGSLLWRESGVGRVAELTAEGVLHGVGETCRPVTEHLRRQLAIAMACESTEESSPPKSPRKQVIARDALMGLGTMATLCGDDRGARDLYERAVQCCRASGDWIGLAHALTAKARLQAAAGRFEEAVGGFKLVLKLACELRDDALAASAHSCLGWAMASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAHMHVRLAIVLNGNGDQAVCHDTPQTNPNPALELSSHAELVGARRHYSR 7980
MMKGSLLWRESGVGRV ELTAEGVLHG+GETCRPVTE+LRRQLAIAMACESTEESSPPKSPRKQVIARDALMGLGTMATLCGDDRGARDLYERAVQCCRASGDWIGLAHAL AKA LQAAAGRFEEAVGGFKLVLKLACELRDDALAASAHSCLGWAMASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IAHMHVRLAIVL+G+GDQAVCHDTPQT+PNPALELSSHAELVGARRHYSR
Sbjct: 1 MMKGSLLWRESGVGRVTELTAEGVLHGMGETCRPVTEYLRRQLAIAMACESTEESSPPKSPRKQVIARDALMGLGTMATLCGDDRGARDLYERAVQCCRASGDWIGLAHALAAKAHLQAAAGRFEEAVGGFKLVLKLACELRDDALAASAHSCLGWAMASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCIAHMHVRLAIVLSGDGDQAVCHDTPQTDPNPALELSSHAELVGARRHYSR 243 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56.15921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig56.15921.1 >prot_Ecto-sp13_S_contig56.15921.1 ID=prot_Ecto-sp13_S_contig56.15921.1|Name=mRNA_Ecto-sp13_S_contig56.15921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1586bp MPPHGSPYSSSASPRSRLSGRVSSTSIQPDAQGKSLSAVRSPVLSTPAMEback to top mRNA from alignment at Ecto-sp13_S_contig56:2992..31069- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig56.15921.1 ID=mRNA_Ecto-sp13_S_contig56.15921.1|Name=mRNA_Ecto-sp13_S_contig56.15921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=28078bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56:2992..31069- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56:2992..31069- >mRNA_Ecto-sp13_S_contig56.15921.1 ID=mRNA_Ecto-sp13_S_contig56.15921.1|Name=mRNA_Ecto-sp13_S_contig56.15921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4758bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56:2992..31069- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |