mRNA_Ecto-sp13_S_contig5598.15916.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5598.15916.1
Unique NamemRNA_Ecto-sp13_S_contig5598.15916.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5598.15916.1 vs. uniprot
Match: D8LLQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ4_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.110e-50
Identity = 104/157 (66.24%), Postives = 109/157 (69.43%), Query Frame = 2 
Query:  212 LPRPRPLRDTAGAGHQCCAHLG----LGAKGDGSRR*RPTSPVPGSRRKRPKSSQSAVATAGGTSPGVQRSAASSRMATARGGGSADGERSYTFAALVLFLFTEPVRPKTKNIAKFLQNIAELLLENVWEGLPAESVTHTNVRMAAIYSRHDSRWMD 670
            LPRPRPLRDT GA H+   HL     L A+GDGSRR R                  A ATAGGT+PGVQRSAASSRMATARGGGS   +R    AALVLFLFTEPVRPKTKNIA       ELLLE+ WEGLP ES THTNVRMAAIYSRHDSRWMD
Sbjct:    9 LPRPRPLRDTPGAAHRGRVHLRSSGRLAAEGDGSRRSRXXXXXXXXXXXXXXXXXFAAATAGGTAPGVQRSAASSRMATARGGGSRSYQRGIRLAALVLFLFTEPVRPKTKNIA-------ELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD 158
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BLAST of mRNA_Ecto-sp13_S_contig5598.15916.1 vs. uniprot
Match: A0A6H5L705_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L705_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.120e-30
Identity = 112/311 (36.01%), Postives = 120/311 (38.59%), Query Frame = 2 
Query:  206 GGLPRPRPLRDTAGAGHQCCAHLG-------LGAKGDGSRR*RPTSPVPGSRRKRPKSSQSAVATAGGTSPGVQRSAASSRMATARGGGSADGERS-----------------------------------------------------------------------------------------------------------------------------------------------------YTFAALVLFLFTEPVRPKTKNIAKFLQNIAELLLENVWEGLPAESVTHTNVRMAAIYSRHDSRWMD 670
            G  PR RP  +  G G Q   H         LGA+GDGSRR RP SPVPGSR +RP  S SA  TAGGT+PGVQR AASSRMA ARGGGSA+GE S                                                                                                                                                     YTFAALVLFLFTEP+RP+TKNIA       ELLLE+ WEGLP ES THTNVRMAAIYSRHDSRWMD
Sbjct:  235 GNAPRKRPAVE--GDGQQLQQHTRRRSSGGRLGAEGDGSRRSRPPSPVPGSRLQRPAPSPSAAVTAGGTAPGVQRLAASSRMAAARGGGSAEGEPSSVAVRAADGEVSASASRGGVAGADESWVREAPAAGETNAHGQGASGSVVTPRAWGEAEMSRAGKSSGGPAXXXXXXXXXXXXXXXXGGIISRVKGMQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAAVLAIVPARYTFAALVLFLFTEPIRPETKNIA-------ELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD 536
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BLAST of mRNA_Ecto-sp13_S_contig5598.15916.1 vs. uniprot
Match: D8LLQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ6_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 7.130e-27
Identity = 55/66 (83.33%), Postives = 56/66 (84.85%), Query Frame = 2 
Query:  473 YTFAALVLFLFTEPVRPKTKNIAKFLQNIAELLLENVWEGLPAESVTHTNVRMAAIYSRHDSRWMD 670
            YTFAALVLFLFTEPVRPKTKNIA       ELLLE+ WEGLP ES THTNVRMAAIYSRHDSRWMD
Sbjct:   55 YTFAALVLFLFTEPVRPKTKNIA-------ELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWMD 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5598.15916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLQ4_ECTSI1.110e-5066.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L705_9PHAE1.120e-3036.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLQ6_ECTSI7.130e-2783.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5598contigEcto-sp13_S_contig5598:366..6249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size694
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_004880.1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.7019484-CDS-Ecto-sp13_S_contig5598:365..5881681463775.7019484-CDS-Ecto-sp13_S_contig5598:365..588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5598 366..588 -
1681463775.7149634-CDS-Ecto-sp13_S_contig5598:2639..26831681463775.7149634-CDS-Ecto-sp13_S_contig5598:2639..2683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5598 2640..2683 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.723941-UTR-Ecto-sp13_S_contig5598:2683..28341681463775.723941-UTR-Ecto-sp13_S_contig5598:2683..2834Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5598 2684..2834 -
1681463775.7330515-UTR-Ecto-sp13_S_contig5598:4495..46231681463775.7330515-UTR-Ecto-sp13_S_contig5598:4495..4623Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5598 4496..4623 -
1681463775.7425618-UTR-Ecto-sp13_S_contig5598:6101..62491681463775.7425618-UTR-Ecto-sp13_S_contig5598:6101..6249Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5598 6102..6249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5598.15916.1prot_Ecto-sp13_S_contig5598.15916.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5598 366..2683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5598.15916.1

>prot_Ecto-sp13_S_contig5598.15916.1 ID=prot_Ecto-sp13_S_contig5598.15916.1|Name=mRNA_Ecto-sp13_S_contig5598.15916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MATARGGGSADGERSYTFAALVLFLFTEPVRPKTKNIAKFLQNIAELLLE
NVWEGLPAESVTHTNVRMAAIYSRHDSRWMDYSVRPVV*
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mRNA from alignment at Ecto-sp13_S_contig5598:366..6249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5598.15916.1 ID=mRNA_Ecto-sp13_S_contig5598.15916.1|Name=mRNA_Ecto-sp13_S_contig5598.15916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5884bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5598:366..6249- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCCTGGTCGTTCACAGACATGGCAGGCAACGAATGATGCTCCAGAGC
TCTGGATGAGCGTCGGTTCAGTGAAACCTCGGCTACGAAAGGATTGACGC
AGCTGGCGGGTTGAGTGGGATGCAGGCTGAAGAAACGAAGAGGGCAAGGT
GTGAGGCCGGATACTGTAGTCTGCTGCATGAGTACCCTGGCAGGTGACAT
CCGTCTCTTTCTCAGGCGGCGGCTGTGTTGCATCCTCATCCTGCGAAAAA
CAGGCAGTGACTGCGGTGTTCGGAGAAAGGACAATCATTTGTTGCGAGAA
CTGGCCGCTTCAGTTGTTGGAAATAGTGGGTCGCAGACGAGAGCACATCA
ACACTACGACGCGGACGGAGGCTCGAGGAAGCGTAACACGATTTCTACCT
ACGCGAAAATGGATCACTTTTTTTTTTTTTCCTGCAGCAGTGCAAGTCGT
CCACGCCCAACACTTGAATGTGTCCATGGGCTGGAATCCGGATTCTCCCT
GGAACACGGTTTTTCCCTTGGGCTGTCTACCTTTTTTCGCAGATCGGTGG
CACCTGGTTCATGGTTTCTGTTCGGTGTGTTGACCATGGAACGATGTGGT
GCGGTGTGGTAGCGCTGGCGCTAGCAACCGTTCTTAGCGTCGGTATGATC
GTGCGCTTGCTTGTGGAAACCCCATCGGCAGAGGAGGTAGGACCCTTGAT
GCCACTCTGAAGCAGAGGATTCAAACACGGCAGCGTTGCTGCACAGAGAG
CACCGGTCAGCCTTCGATACCCAGAAACTACATGTTTTGCGTTGAGTCGA
CCATGTGGATAGCCATGAAAGAGAAAGTCCGCCATATGATGATTATGATC
GGTTTCGTGTTGTGCTTTTGCCAAAAGGGAATTCGTTCGTGCTGGGATAT
TCATTCCCCCTCGTCGTGAGATGTTCGTATCACGGTTGGTGATGCGCCTG
TGGCTGGCTCGCAGCGGAGTCGTCTGCTGTAGCTCGCGATGAACACCGGC
CCCCGAAGTGCGTGAACTACAGTAGGAATGAGAGAGATAGGCATGGTGTG
TCGACGTGGGGTCGCGTCCTTTTCCCTACGGGTAGCATGGATCCCTAGGT
CCTGGTGTCCGTGATTGTAGCGCCGACTTCGGTTGCTTGGCCTGGTCGTG
GATACGGCACCTCTCTGCAACGCTGGGACGGACGAGCTGTAGGGAGGACC
CAAGCGATATGCCGTGTGACACTTTGAACCCATTGCCATTTTGTCCTGGG
CGTTTCAGCTGTGGGTAGAGCCGCATAGATATTTTGCTTGGGAGCACAAA
ACAAGTACGAAATTTGCTCCCGCTAACGTGCCGCACCACCTACGTTGCCT
ACCAATGCATGGTGGGATCGAATCGGGGGGGGGAGGGGGGGGGAGACGAT
GGACGAGCGCGGTCACGGGAAGTCCGGACGACCATGCCCGCCACGCCTGC
GCTGCCTCTGACATCCCTCTCCCCGTCCCCTACTTTACCGTGTTGTACGG
TGTATGTGTGTTTATTTAATGAGCATCCACTACGCTAAAGCCGATGAAAT
GAAGGCGTCAGCCGGTCTTGTAGCAGAATGAAAAGCACGAACCTTCTCCA
ATCAAGCGTGTGTGTGTGCGTACCAGGGTCTGTTGCAATGGAAAAACCGT
ATGCGGAGCCTGTGGGTGACAACCGCTGGTCTGGGTGGCCTACCACGACC
TCGTCCGTTACGCGATACCGCTGGCGCTGGTCACCAATGTTGCGCACATT
TAGGGTGAGCTGACGACTGAGTTTGTCTTCACCTCGTTCATCTCGTTCAT
GACGTCTCTGCTTAGTGGACGGTTTTTTTTAGACGTTTTTACCCCCTCCT
TTCCGCTCGTGCTTGTTGGTGGTATGTATCTGAGGAAGACAAGAACGAAG
AATGGCGTGTTTTGTACGCGGTTGGATGGTCTCGCGCCCTCCGGCGGTCT
CGATGAGTAGCACTTACCTTTCTCTCTGTCTCTCCTCTGTGTACATATAT
CGTGATCGCTGTATTTCTCTTTATCTATTCCTGTCTCCCGCTTTCTCATG
TGAATGAAAAGTGAACACTCGTCCAAATGTGCAGAGTGCGTGCGATGTGT
GTGTGTGTGGCTCCATGCTGCGAGGAAAAGGATTCTTGGTTCATGGTTTG
ATCGTCATCGTCGTTTTGGAATATCATCTACCTTCCATTGTTCGGTCGGG
AACGGACACCATCGCCTGCTGTATGCGTATATGTGGGGAAGCTAGGCCGT
GTGTGATACCGATGTCGGGAAATCCCAAATCGAAAAATCTGAGATTTCTT
TCGGAGGATATTCGAGTTCATCATAACTTTTCTTGAAAGTGTCCCTTCAA
CAATGTCAAGAGTGAGCTCTACTGAAAACCCAGACCAAGGCTTACTTTTT
TTTGGATTTTGACCAATCCAAGCTCGATTCTTGAAGCTCGTCACTACCGA
GCCTTACCAAGCTGGTCCGCCGGTCGCGCATGTTCATGCCCCGGGGATGC
ATGGATGCATGGATACGTGAGGTTGGCTTCCCCATCCGTCGCTCGACGAT
ATAAACTGTTTCGTCAAGGTTATAAACGCCCCCCCCGAATACCATACGGC
ACTCTGCGCTTGGTGACGTGAGAGCCTGGTCTGGTGAAAACCCGGCGTGC
TCCGTCCCGACTTTGTAGGGATGCGAGGTCAATGGCCTAACGACTAAGGC
TTGCGCGTCTACGACTACACGCCCCCCCCCCCCCTTGAAACGGCAAAAAA
TGTTGATCTTGAAGGTGTAGGGTGCATCACGACGATGGCGGTGCTGGAGG
TGGTGGTGGCGGCGATGGAGATGGCCGTGCCGACCTTTCCGGCAATGCCC
CCACGAAACGACTTGCCGTCGAAGGCGGTGGTCAGCAGCAGCAACAACAA
CAGCTACAGCACACCAGGCGGCGAAGGTGAGACAGACAGAGAAACAGAGA
GGGAGAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAC
CACGAAACACTATCCTAGCCATAGGCAAAACCCGAACGTTCAACACCTAT
CCTAGCCATTGGAAACTTTGGGTACGCTGCGGTCGGTGTTCGGGTCAACG
GGCTCAAGGGTCGGCCTGCCTGCCTGACCGCTGACTGCTTCCCGTATGGC
CTCCCTAAACCCCAAATGCACGCAGTATAGCCAATCCACTTTAGCTTCTT
TCAGCTTTTTTGCTGCCCGGTCTCCTGCGGGGCACGTTTCCGGCGGCCAC
TGACCCTTGCTTTTTATTCCAGTTGACCCTCTCAGGTCCCACCGACCATA
TTCAACCCAGGCGAGAATGCCCCCCTCCTCTGCTGATGACACACCCCGGC
TCGAAATCTCTCCACAACTCGGTGTCTTGATCATATATATGTTCCCACTG
CATCTCAGGCGGGAGGTTGGGCGCCAAAGGCGACGGCAGCCGGCGATAGA
GGCCCACGTCCCCCGTGCCCGGCTCAAGACGGAAGCGGCCTAAGTCCTCG
CAGTCCGCCGTCGCGACCGCGGGTGGCACGTCGCCGGGAGTTCAACGCTC
GGCGGCGTCTTCGAGGATGGCCACTGCACGGGGCGGTGGGAGCGCGGACG
GGGAGCGGTCGTCCGACGCGGTGCGGGCCGCAGATGGGGAGGTGTCAGCG
TCAGCCAGCCGTGGCGGTGTTGCCGGTGGCGATGAGTCACGGATCCGGGA
GGCGCCTGCGGCGGGGGAGAGTAACGCGCACGGTCAAGGAGGTTCGACCT
CGGTGGTAACCCCCCGAGCAGGGGCTGAGGAGGAGATGGCGGCGTCGGGG
AAGTCGTCTGGGGACCCTCCGCCAGCGCTTCGCAACGCCTGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGTAGAAGTAGCAGCAGCAGCAGCA
GGAGGGTGGGGTAATCAGCCGTGTGAAGGGCATGCACGACCGGACGACCA
TAGGTGCGTAGGGGACACAAGATCTCACCCCCCCCCTGGATCGATTTTCA
CAGCTCCACGACGAAGAGGATATATATGCTTCGAGCTATACGTTTTTCGG
AGACGAGACGATTCCGACGCCTCTGTTAGTGGGCACCACCGCTGTTTCTG
CCGGGGAGAAATCGAGGGTTGATAACCAGCCCAGGGGGTCTGGTATGTTG
TGCCATCTACGGTATTGTCTCGTGGATGAGCGTTGTTGCTGCTGGATGTT
CGAGAGGAGCAGAAAACGTCGGGGGGCGGAGTCATGTGGAACGTGTGGTG
AAATACCTTGAATGTAAAATGCCCCGGTCATTTTTTTTTTGTGAGTTTTC
GATGTGGCATGTGTGGGAACGGTTCCATGCCAATCAGTACCGAACTATGG
CATGCGACACAAGACGCCCCGCTGATAGCTACCGTGACATTTTGGCTTCT
AAACTATTTGGACTAGGTGTATTTAACATTGGGTGTTTGGTTTATCTCGT
GTCGCCCGTTGCTTCAACTGACAACATCGATTGTAGTTTGGGCTGATGTT
GTAGTTTTGTTTTGCCCATGTTGACCCACTAAAATTGAATACCGGTTGCC
GTACTCGTGTGTGCGCACGGGTGTGTTATCGTATGTCGCGTAGGTTTCCC
GACGAACCAACCAATCAGCGCTTGGTGTCACATTTGTTTTTTCGAGACTT
GAGTGGGCATGCTTAGTCTCTCTGTAGCCCGTGTTGGCGACATTACGGGA
CGGAGTTGTGTGTCCTCTGTCCCTTTCACTCTGCGTGAGACTTGGGCTAC
TTTTGTTTTTTGGCCAGAACCACCGACACCGATGCGTAATGTTTTTTCGC
GCCGAATCCAAACGTTGATTTGTAGCTTTGTGCGACGTCTGGGCGTCACG
AAGACCAAATGAGGAAGTGATAGTATAGTAGCGGTATCAACACATAGACT
ACCACCGTCCTTGATTTCGGAAGCTCGACGAGGTTCATGTGCTCACTCAC
CCGCCACCCTAACCGACCGTCCATTTTTAGCGTTTTCAGACACACTTTTC
AAGGTGTTCATTGCCCGCCGCGGCACCACCCATGACTTGCGACCTCGCTA
TGTACAGCCGCAGCTGTAATCCCTCCTTTCCCATGCCGGGTGAATCCCTA
GGCGAAGCTTCACGCCTACAACGCTGTGCTGCTCTGGGTGAAGAGTGTTC
ACGCCTGAAGCGACCCTGGACGGACGAAAGTCTGGGCGGCATCTGTCTCG
CTTCTGGCGGAGGTGCTAGCGATCATACCTGCGCGGTACGTACGCTTCAT
TGTTGTTGTGTGGGTACGATTATTAGCCGAAGCGGAGAAGTAAGTATTAT
TTTTCTACGTGAAGGAAGAAAGATTACAATATCCTGCAGCACCAAGTTCG
ATGATCATGGCCGCGGTGTTCGAGACAACTCCTGCTGTTGGTATCATTTT
TTTTATTGTTGTTTCGCGTTCGGCGCGCTCGTGGTGTTCCGCCCTTTCAC
TTCCCCCTCGCCTCTCAAAATTTTCATTCCCGGAATCCCAAACTCACTGT
ACCTGTTTGGCTAGTTGCCTGACGTTATCGTTGTGCGACTTGGTACTTGA
GGAGAGATTTGAAACACTGGTACGATGTGTCACTCCAGCAGCGACGTCTA
TTCAACCGTTCGAATCGAATGTGGCTAGCAAGAGCCTGATCATAATGCGA
ACCCCCCCCAGGTATACGTTTGCGGCTTTGGTGCTGTTCCTCTTCACGGA
GCCTGTCCGTCCCAAGACGAAGAACATCGCCAAGTTTCTGCAGAACATCG
CCGAGCTTCTGCTGGAAAACGTTTGGGAAGGCTTGCCTGCCGAGTCCGTG
ACGCACACGAACGTGCGCATGGCGGCGATCTATAGTCGGCATGACTCAAG
ATGGATGGATTATTCGGTCCGTCCGGTGGTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5598:366..6249-

>mRNA_Ecto-sp13_S_contig5598.15916.1 ID=mRNA_Ecto-sp13_S_contig5598.15916.1|Name=mRNA_Ecto-sp13_S_contig5598.15916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5598:366..6249- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCACTGCACGGGGCGGTGGGAGCGCGGACGGGGAGCGGTCGTATAC
GTTTGCGGCTTTGGTGCTGTTCCTCTTCACGGAGCCTGTCCGTCCCAAGA
CGAAGAACATCGCCAAGTTTCTGCAGAACATCGCCGAGCTTCTGCTGGAA
AACGTTTGGGAAGGCTTGCCTGCCGAGTCCGTGACGCACACGAACGTGCG
CATGGCGGCGATCTATAGTCGGCATGACTCAAGATGGATGGATTATTCGG
TCCGTCCGGTGGTGTAG
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