mRNA_Ecto-sp13_S_contig5593.15909.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5593.15909.1
Unique NamemRNA_Ecto-sp13_S_contig5593.15909.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5593.15909.1 vs. uniprot
Match: D7FW10_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW10_ECTSI)

HSP 1 Score: 704 bits (1818), Expect = 9.070e-250
Identity = 427/509 (83.89%), Postives = 443/509 (87.03%), Query Frame = 1 
Query:    1 MTASRGVMGSATFLVAVSGLLDPPLVPPNGLSPFHRSAPAPPPILFRSNTRRGSFCAGLLASTARRRKRCLQAGNESPGTGDEGVNAAAGGRRHGSGHGIFDANAWKNMPSSPPPVTAPTTSLYPSAVQLSSNDALDGEREEMHEEPINVDVEKLPTFVFFVRVNGRHRREEVVGGRDARTCAAELRKRLASVSLPGSSWTNSVSLVDNDSPLRPSGAGEGGVGGGVARTSSDGAALVGEAAEGPDRLDDETDTGMGRGSGGMGANVDVTGSPTTIVEISDKRDLLRVLGAKGEGQGPVVVMYHAPWCRKCAYLTPVFRRLAAAQATSVGGREADGSSSDMGPSERPLFCRVDVSHPSWGKRRAVRGASVAPPTVASEGSAAAAAADTAVTGRAQNKAAIAAGASSQVRGLGVGDRAAGLVAADXXXXXXEAEGTIAEMELLHAGSQAVENCDVCGGSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD 1527
            MTASRGV+GSATFLVAVSGLLDPPLVPPNGLSP   SAP PPP LF+S+T RG +CAG LASTARRRKRCLQAGNESPGTG EGVNAAAGGRRHGSGH +FDA+AWKNMPSSPPPVTAP TSL PSAVQLSSNDALDGE EE  EEP NVDVEKLPTFVFFVR  GRHRREEV+GGRDARTCA EL +RLAS+S PGS+WTNS SL DNDSPLRPSGAGEGGVGGG ARTSSDGAA+VG AAEGPDRLD ETDTGMGRGSG M ANVD TG+PT IVEISDKRDLLRVLGA GEGQGPVVVMYHAPWCRKCAYLTPVFRRLAAAQA S G RE  GSS + G SE PLFCRVDVSHPSWG+RRAVRGASVAP TVAS G+AA             N AAIAAGASSQ +GLG GDRAAG VAAD      EAEGTIAE ELLHAGSQAVENCDVCGGSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD
Sbjct:    1 MTASRGVLGSATFLVAVSGLLDPPLVPPNGLSPLRPSAPNPPPSLFQSDTHRGYYCAGPLASTARRRKRCLQAGNESPGTGGEGVNAAAGGRRHGSGHSMFDADAWKNMPSSPPPVTAPPTSLNPSAVQLSSNDALDGEGEEEREEPTNVDVEKLPTFVFFVRDKGRHRREEVIGGRDARTCATELSERLASISSPGSTWTNSGSLDDNDSPLRPSGAGEGGVGGGAARTSSDGAAVVGGAAEGPDRLDYETDTGMGRGSGDMVANVDGTGNPTNIVEISDKRDLLRVLGALGEGQGPVVVMYHAPWCRKCAYLTPVFRRLAAAQAPSAGVREGGGSSIERGSSEGPLFCRVDVSHPSWGRRRAVRGASVAPSTVASAGTAAXXXXXXXXXXXXPNTAAIAAGASSQAQGLGFGDRAAGWVAADATTATAEAEGTIAETELLHAGSQAVENCDVCGGSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD 509
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BLAST of mRNA_Ecto-sp13_S_contig5593.15909.1 vs. uniprot
Match: A0A6H5JLH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH3_9PHAE)

HSP 1 Score: 687 bits (1774), Expect = 6.290e-243
Identity = 386/519 (74.37%), Postives = 410/519 (79.00%), Query Frame = 1 
Query:    1 MTASRGVMGSATFLVAVSGLLDPPLVPPNGLSPFHRSAPAPPPILFRSNTRRGSFCAGLLASTARRRKRCLQAGNESPGTGDEGVNAAAGGRRHGSGHGIFDANAWKNMPSSPPPVTAPTTSLYPSAVQLSSNDALDGERE-EMHEEPINVDVEKLPTFVFFVRVNGRHRREEVVGGRDARTCAAELRKRLASVSLPGSSWTNSVSLVDNDSPLRPSGAGEGGVGGGVARTSSDGAALVGEAAEGPDRLDDETDTGMGRGSGGMGANVDVTGSPTTIVEISDKRDLLRVLGAKGEGQGPVVVMYHAPWCRKCAYLTPVFRRLAAAQATSVGGREADGSSSDMGPSERPLFCRVDVSHPSWGKRRAVRGASVAPPTVASEGSAAAAAADTAVTG---------RAQNKAAIAAGASSQVRGLGVGDRAAGLVAADXXXXXXEAEGTIAEMELLHAGSQAVENCDVCGGSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD 1527
            MTAS GV+GSATFLVAVSGLLDPPLVPP GLSPFH SAPAPPP LFRS+ RRGSFC G LASTAR RKRCLQAGNESPGTGDEGVNAAA GRRHGSGHG+FDA+AWKNMPSSPP VTAP TSL PSAVQLS+N ALD E   E  EEPI+V V+KLPTFVFFVR NGRHRREEV GGRDARTCA +LR+RLAS+S PGS+WTNS SL DNDSPLRPSGAGEGGVGGGVART SDGAA+VG AAEGP+RLD+ETDTGMGRG+GGMGA VD TGSPT IVEISDKR+LLRVLGA+GEGQGPVVVMYHAPWCRKCAYL PVFRRLAAAQATSVG  +A GSSSD G S  PLFCRVDVS PSWG+RRAVRG+SVAP TVASEG+AA                   RA+NKA+IAAGASSQ RGLGVGDRAAGL+AAD       AEG IAE ELLHAGSQAVENCDVCGGSGFVP                                       GGKCYMCD
Sbjct:    1 MTASCGVLGSATFLVAVSGLLDPPLVPPIGLSPFHPSAPAPPPSLFRSDKRRGSFCGGPLASTARMRKRCLQAGNESPGTGDEGVNAAAAGRRHGSGHGMFDADAWKNMPSSPPLVTAPPTSLNPSAVQLSANGALDDEGGVEGREEPISVYVDKLPTFVFFVRDNGRHRREEVTGGRDARTCATKLRERLASISSPGSTWTNSGSLDDNDSPLRPSGAGEGGVGGGVARTRSDGAAVVGGAAEGPNRLDNETDTGMGRGNGGMGAIVDGTGSPTNIVEISDKRELLRVLGARGEGQGPVVVMYHAPWCRKCAYLAPVFRRLAAAQATSVGVTKAGGSSSDRGSSGGPLFCRVDVSDPSWGRRRAVRGSSVAPATVASEGTAAXXXXXXXXXXXXXXXXXVRRARNKASIAAGASSQARGLGVGDRAAGLMAADATATPANAEGKIAETELLHAGSQAVENCDVCGGSGFVPCGECGGLGAVSRASPDGKHTMAVTCSSCVGYKRLRCPSCGGKCYMCD 519
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5593.15909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW10_ECTSI9.070e-25083.89Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5JLH3_9PHAE6.290e-24374.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5593contigEcto-sp13_S_contig5593:615..2402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1788
Hectar predicted targeting categorychloroplast
Exons1
Ec32 ortholog descriptionThioredoxin-like fold and cysteine-rich domain protein
Ec32 orthologEc-01_002920.1
Cds size1530
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463774.8369257-CDS-Ecto-sp13_S_contig5593:614..21441681463774.8369257-CDS-Ecto-sp13_S_contig5593:614..2144Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5593 615..2144 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463774.8472624-UTR-Ecto-sp13_S_contig5593:2144..24021681463774.8472624-UTR-Ecto-sp13_S_contig5593:2144..2402Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5593 2145..2402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5593.15909.1prot_Ecto-sp13_S_contig5593.15909.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5593 615..2144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5593.15909.1

>prot_Ecto-sp13_S_contig5593.15909.1 ID=prot_Ecto-sp13_S_contig5593.15909.1|Name=mRNA_Ecto-sp13_S_contig5593.15909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=510bp
MTASRGVMGSATFLVAVSGLLDPPLVPPNGLSPFHRSAPAPPPILFRSNT
RRGSFCAGLLASTARRRKRCLQAGNESPGTGDEGVNAAAGGRRHGSGHGI
FDANAWKNMPSSPPPVTAPTTSLYPSAVQLSSNDALDGEREEMHEEPINV
DVEKLPTFVFFVRVNGRHRREEVVGGRDARTCAAELRKRLASVSLPGSSW
TNSVSLVDNDSPLRPSGAGEGGVGGGVARTSSDGAALVGEAAEGPDRLDD
ETDTGMGRGSGGMGANVDVTGSPTTIVEISDKRDLLRVLGAKGEGQGPVV
VMYHAPWCRKCAYLTPVFRRLAAAQATSVGGREADGSSSDMGPSERPLFC
RVDVSHPSWGKRRAVRGASVAPPTVASEGSAAAAAADTAVTGRAQNKAAI
AAGASSQVRGLGVGDRAAGLVAADATAATAEAEGTIAEMELLHAGSQAVE
NCDVCGGSGFVPCGECGGRGAVSRSSPDGKHTIAVTCPSCVGYKRLRCPS
CGGKCYMCD*
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mRNA from alignment at Ecto-sp13_S_contig5593:615..2402+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5593.15909.1 ID=mRNA_Ecto-sp13_S_contig5593.15909.1|Name=mRNA_Ecto-sp13_S_contig5593.15909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1788bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5593:615..2402+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCTAGTCGTGGTGTTATGGGTTCCGCAACCTTCCTTGTCGCCGT
GAGCGGCTTGCTTGACCCGCCGCTGGTTCCGCCAAACGGGCTCTCGCCCT
TCCACCGGAGTGCCCCCGCTCCGCCGCCGATCTTGTTTCGGAGCAACACG
CGTCGGGGGTCTTTTTGTGCGGGACTATTGGCGTCGACGGCGCGCAGACG
CAAGAGATGTCTTCAAGCGGGAAACGAAAGCCCGGGGACAGGTGACGAAG
GGGTGAACGCAGCGGCGGGGGGGCGCAGGCACGGGAGCGGCCACGGCATT
TTCGACGCCAACGCGTGGAAAAACATGCCTTCTTCTCCTCCACCAGTAAC
GGCGCCAACGACCAGCCTATACCCCTCCGCTGTACAGCTGAGCTCCAACG
ACGCCCTAGATGGTGAACGAGAGGAAATGCACGAAGAACCCATCAACGTG
GACGTGGAGAAGCTGCCGACCTTCGTGTTTTTCGTCCGGGTCAATGGGCG
GCATCGGCGGGAGGAAGTTGTCGGTGGGCGCGACGCCCGAACCTGCGCGG
CTGAGCTACGCAAAAGGTTGGCATCTGTGTCATTACCGGGAAGCAGCTGG
ACTAACTCGGTTTCCCTTGTCGATAACGACTCGCCTCTACGTCCATCTGG
GGCGGGAGAGGGAGGAGTAGGTGGCGGTGTTGCTAGAACTAGCAGTGATG
GTGCCGCTCTAGTTGGGGAGGCTGCAGAAGGTCCAGATCGTCTTGACGAT
GAGACCGACACGGGAATGGGACGCGGTAGCGGTGGCATGGGCGCAAATGT
AGACGTTACAGGCAGCCCCACCACCATCGTGGAGATTTCCGACAAGCGCG
ACTTGCTTCGCGTTCTTGGCGCGAAGGGGGAAGGGCAGGGCCCTGTGGTG
GTCATGTACCACGCCCCTTGGTGCCGTAAGTGCGCCTACCTCACCCCCGT
GTTCCGCCGCCTCGCTGCCGCTCAGGCGACCTCTGTTGGCGGTAGGGAAG
CCGACGGTAGTAGCAGCGATATGGGTCCATCCGAAAGGCCGTTGTTCTGT
CGTGTGGATGTTTCCCACCCGTCGTGGGGGAAGAGACGTGCCGTGCGTGG
TGCTAGCGTAGCTCCGCCTACGGTCGCTTCCGAAGGCTCAGCAGCGGCAG
CGGCGGCAGACACAGCGGTAACAGGACGAGCACAAAACAAGGCAGCCATC
GCGGCTGGAGCATCGTCGCAAGTTCGAGGGCTTGGAGTCGGCGACCGTGC
CGCCGGATTGGTGGCAGCTGATGCCACTGCCGCCACCGCGGAAGCGGAGG
GTACAATTGCCGAGATGGAGCTGCTACACGCTGGTTCGCAGGCCGTCGAG
AACTGCGACGTCTGCGGCGGGTCCGGCTTCGTGCCGTGCGGGGAGTGCGG
GGGGCGGGGTGCGGTGTCCCGATCGAGCCCTGACGGGAAGCACACGATTG
CTGTCACGTGCCCCTCGTGCGTCGGCTACAAGCGGTTGCGCTGCCCGTCG
TGCGGCGGGAAATGTTACATGTGTGATTGAAAGCATCCAGGACAAGAGAG
GAAACGTTTAGCGTATACCTGTGTCGTTTGAGTTGTTCCAAGCGGGTATC
GTACCAGCAATCGCTGCTGTGTTTGTGGTAGGTGCGGAGCCGCTGATTTC
TTGTACGTAGGCGTGCTTTCCGATAGCCGACTTCCTAGAAATAGAGCAGA
GCTCGTGACCCTTGAATTATGGTGCCGGTGTGCCTGAAGTTGGTGGAAGT
GCCTTGATCATGACAACAGGGAAGTTTCCCGAAACTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5593:615..2402+

>mRNA_Ecto-sp13_S_contig5593.15909.1 ID=mRNA_Ecto-sp13_S_contig5593.15909.1|Name=mRNA_Ecto-sp13_S_contig5593.15909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5593:615..2402+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCTAGTCGTGGTGTTATGGGTTCCGCAACCTTCCTTGTCGCCGT
GAGCGGCTTGCTTGACCCGCCGCTGGTTCCGCCAAACGGGCTCTCGCCCT
TCCACCGGAGTGCCCCCGCTCCGCCGCCGATCTTGTTTCGGAGCAACACG
CGTCGGGGGTCTTTTTGTGCGGGACTATTGGCGTCGACGGCGCGCAGACG
CAAGAGATGTCTTCAAGCGGGAAACGAAAGCCCGGGGACAGGTGACGAAG
GGGTGAACGCAGCGGCGGGGGGGCGCAGGCACGGGAGCGGCCACGGCATT
TTCGACGCCAACGCGTGGAAAAACATGCCTTCTTCTCCTCCACCAGTAAC
GGCGCCAACGACCAGCCTATACCCCTCCGCTGTACAGCTGAGCTCCAACG
ACGCCCTAGATGGTGAACGAGAGGAAATGCACGAAGAACCCATCAACGTG
GACGTGGAGAAGCTGCCGACCTTCGTGTTTTTCGTCCGGGTCAATGGGCG
GCATCGGCGGGAGGAAGTTGTCGGTGGGCGCGACGCCCGAACCTGCGCGG
CTGAGCTACGCAAAAGGTTGGCATCTGTGTCATTACCGGGAAGCAGCTGG
ACTAACTCGGTTTCCCTTGTCGATAACGACTCGCCTCTACGTCCATCTGG
GGCGGGAGAGGGAGGAGTAGGTGGCGGTGTTGCTAGAACTAGCAGTGATG
GTGCCGCTCTAGTTGGGGAGGCTGCAGAAGGTCCAGATCGTCTTGACGAT
GAGACCGACACGGGAATGGGACGCGGTAGCGGTGGCATGGGCGCAAATGT
AGACGTTACAGGCAGCCCCACCACCATCGTGGAGATTTCCGACAAGCGCG
ACTTGCTTCGCGTTCTTGGCGCGAAGGGGGAAGGGCAGGGCCCTGTGGTG
GTCATGTACCACGCCCCTTGGTGCCGTAAGTGCGCCTACCTCACCCCCGT
GTTCCGCCGCCTCGCTGCCGCTCAGGCGACCTCTGTTGGCGGTAGGGAAG
CCGACGGTAGTAGCAGCGATATGGGTCCATCCGAAAGGCCGTTGTTCTGT
CGTGTGGATGTTTCCCACCCGTCGTGGGGGAAGAGACGTGCCGTGCGTGG
TGCTAGCGTAGCTCCGCCTACGGTCGCTTCCGAAGGCTCAGCAGCGGCAG
CGGCGGCAGACACAGCGGTAACAGGACGAGCACAAAACAAGGCAGCCATC
GCGGCTGGAGCATCGTCGCAAGTTCGAGGGCTTGGAGTCGGCGACCGTGC
CGCCGGATTGGTGGCAGCTGATGCCACTGCCGCCACCGCGGAAGCGGAGG
GTACAATTGCCGAGATGGAGCTGCTACACGCTGGTTCGCAGGCCGTCGAG
AACTGCGACGTCTGCGGCGGGTCCGGCTTCGTGCCGTGCGGGGAGTGCGG
GGGGCGGGGTGCGGTGTCCCGATCGAGCCCTGACGGGAAGCACACGATTG
CTGTCACGTGCCCCTCGTGCGTCGGCTACAAGCGGTTGCGCTGCCCGTCG
TGCGGCGGGAAATGTTACATGTGTGATTGA
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