mRNA_Ecto-sp13_S_contig5592.15908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5592.15908.1
Unique NamemRNA_Ecto-sp13_S_contig5592.15908.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5592.15908.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.150e-42
Identity = 86/112 (76.79%), Postives = 91/112 (81.25%), Query Frame = 1 
Query:    1 KCSSSGNHDHGHRGEVGGSEMARSEGMADVDYDGPRKTSKGMGGEVEAGGGEGVRDIAAGL---GRNSVVHTASNDGCVVGAEGGDEGLRLEVLLLLGIGLEGLFRTVWGFL 327
            KC SSG +DHG  GEVGGSEMARSEGMA  DY  P  T  G GGEVEAGGGE V+DIAAGL    R SVVHTASNDGCVVGAEGG+EGLRLEVLLLLG+GLEG+FR V GFL
Sbjct:  115 KCRSSGGYDHGDGGEVGGSEMARSEGMAGADYGRPGTTRNGAGGEVEAGGGEEVQDIAAGLLGLRRKSVVHTASNDGCVVGAEGGEEGLRLEVLLLLGLGLEGVFRAVVGFL 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5592.15908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNI8_ECTSI1.150e-4276.79EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5592contigEcto-sp13_S_contig5592:585..6944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size671
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463774.7588603-UTR-Ecto-sp13_S_contig5592:584..6441681463774.7588603-UTR-Ecto-sp13_S_contig5592:584..644Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5592 585..644 +
1681463774.7952108-UTR-Ecto-sp13_S_contig5592:914..9501681463774.7952108-UTR-Ecto-sp13_S_contig5592:914..950Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5592 915..950 +
1681463774.8066587-UTR-Ecto-sp13_S_contig5592:6639..69441681463774.8066587-UTR-Ecto-sp13_S_contig5592:6639..6944Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5592 6640..6944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463774.7722208-CDS-Ecto-sp13_S_contig5592:644..9141681463774.7722208-CDS-Ecto-sp13_S_contig5592:644..914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5592 645..914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5592.15908.1prot_Ecto-sp13_S_contig5592.15908.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5592 645..914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5592.15908.1

>prot_Ecto-sp13_S_contig5592.15908.1 ID=prot_Ecto-sp13_S_contig5592.15908.1|Name=mRNA_Ecto-sp13_S_contig5592.15908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MARSEGMADVDYDGPRKTSKGMGGEVEAGGGEGVRDIAAGLGRNSVVHTA
SNDGCVVGAEGGDEGLRLEVLLLLGIGLEGLFRTVWGFL*
back to top

mRNA from alignment at Ecto-sp13_S_contig5592:585..6944+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5592.15908.1 ID=mRNA_Ecto-sp13_S_contig5592.15908.1|Name=mRNA_Ecto-sp13_S_contig5592.15908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5592:585..6944+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAATGTAGTAGCTCTGGCAACCACGACCACGGTCATCGTGGTGAGGTCGG
GGGATCTGAGATGGCGAGGAGCGAGGGCATGGCGGATGTTGATTATGACG
GGCCTAGGAAAACAAGCAAGGGTATGGGTGGTGAAGTCGAGGCTGGAGGC
GGGGAGGGAGTCCGAGACATCGCCGCTGGGCTTGGAAGGAACAGCGTGGT
TCACACGGCCAGCAACGACGGATGTGTGGTTGGCGCCGAGGGCGGAGACG
AAGGCTTACGGTTGGAGGTGCTTCTCCTGTTAGGGATCGGGCTGGAGGGG
TTGTTTCGCACGGTGTGGGGCTTTCTTTGAGGAGCACCAAGGAGCAACCT
TCCTCTTGGGGCTTGGGTGAGTTGGTTTATTTGTCGTTTTCCTCGCACTC
GCACGGCCGCCTGCAGCACATACAGTCGGCGGCATGGTCTACTCGACCTG
TACAGATCTGCCGTGTACTTGGCTATGTTCTCTCTGAGGTAAGCTAGGAT
TCGGTCTCTCGGGGATTGATGGTCGATCGGACGCCATTCCCACACCTGCC
GTCCCTGTTTGGATCCACAGCTTGTGTCGGAGTCCAGACAAGCGGGTACT
ATTGGACGGGTTGGAGCACCACAGGGTGATCTTGGAGCTCTCTAAAACCG
TACGAGGTGCCTCTATTGTACCTCTTTTTGAGTCTCTAGCAGCATCACAC
ATGGTGTCGAGGGTAATCCAACAAGCTGAATGTAGCCGCAGTGCAATGCT
CTACTCCACAAATGTTGTGGGTCCGTGGTACCCCGTTGCAGAAGGCGGAA
GACGCCATGCTTCCTTAATCTGACAGCACCATCACCTAGGCCCCTTTCAT
GAGGATCATACAGCAGTCGAGATCAACCAACTCGCGTCGTTGGGTTTGCC
GAATCGAACCATGTGAGCAACAAACCTTCTGGAGCGCACCATCGCCGGAC
GGCCTCTCGAAACCTCCGTTGTTGCGGTTGGACATCACCTACTCGCCCCC
CCCCCGCGGCCCCTGTGTTGTAGACGAGTGAAGATCCGCCGCACATGTGT
GGGGATGTTCACTTCGATTTTCAACTGCGTCCGCATCATGATACAACACA
CGGAAGTTATTTTCTTTGCGCTGTGCGGGATTTGCACACTTCGTTCCCCT
TGATCGGTGGCTGTGCAGACTCCCTCTGACGGACCACGTCGTTTTGACTA
AGGCATTTTTTTTTTTGTAGTCGTCTGTGGCTCCGCTTTTGGGATGTTTT
TTTCAATAAATCTCTCTTTTGCTGTTTACCCGCCTCCCCTAAGGCTGATT
CTTATTCATCTGGATTCCTATTCCAAAACACGTGACCATCCAGGATCCGC
CTAATTCCCGCTGGAAAACAGTCCGGCCGTTCCTACAATGAACCAGATTT
GTCAGGCGGATTCTTGCGGGGAGGGTGTAGATCGAACCAAGCCGAAACAA
TCGGCGAGTGCGACCTGAGTTCTTGACGTATCGCTCCCATCAAGGGCTCC
GAGCAACCCTACGCTGAAGGGTGTGCTATTCTGCACTCTGGCTGTTGATG
GTCGTCTGGTACGCGTGCGTGAAAAAAACAAACCGCATCGCACCAAGCAT
GAGACATGGAGACGACGAAACAGGCCAAACCGCCACGAGTCAGCAAAAGG
AGCCGCTTTTGTCAAAGACGGGAGGACACCGCAACTGATATCTCGCTCTT
TAGGACACAGATCGAAGCCAGATCGGCCAGGATGTACTCTCTGTTCCTTA
CGTCTCTACCCAAGTAGATTTGCTCAGCAGCTCGTTGATCCAATCATTCA
AAGTCATCTGCGTGTGCACACGCTGTCTGTCGAAAAAAAAATTTAGGCCT
TCAACACATGAGTCTAATCTCAAGTGAAGCAGAACAGAAAAAATCACATT
TCGAAAAAGCAACGGACACCACGCACATGCTTCTCTCCGTCGATTGCGAG
TACGAGTTGCTGAGAAAATCTACTCCAGCAGAGAGCAAGGAACAGAGAGC
ACATCCTGGCCGATCTGGCTTCGACCGGTAGCCTAAAGAGCGAGATATCA
CTTGCAGTGTCCTCCCGTCTTTGACTTAAAGCGGCTCATTGTACTGTCTT
GTGGCGGTTTGGCCTGTTGCAATGTCTCCATGTTTGGTGTGATGCGATAA
TTCCCTTTTACGCACGTATGCCGAGCGACAATCAACAGCCAGCTTGCAGA
ATAGCACACCCTTCAGCGTAGGGTTGCTCGGAGCCCTTGATGGGAGCGAT
ACGTCAAGAACCCAGGCCGCACTCGCCGATTATGTTGACTGGGTTCATCA
ACGGTGAACTTTTTGGGATAAAAAATCCGACTGGGCGCCATCCTGGATTC
TGCCCAGCTTTCTGGGTGAACGCAATACGGATTCCTAGTCCTGGGTTTTG
TTGACCCGAAAAAGTGACAAATCCGACTGCATCACACATCTTGACGTTTA
TGTTGAGCAACCGCTAAAGTGCGGTTGATGCTGCTTCCCGTGAGCAAATG
GAAAAAAGTAGTATTTCGTGGCATAGGAGCAACTGGTTTCCCTCTGGTTT
GTATTCAAGGTGTTTCTCTCTTCGCCGTGCCGGGTCGTTTCCTGGCACTG
GTCCAAACTGCCGAAAACAAGCAGACATCGAACGATGTTGACTCTTTACA
CTTGGTCGACGGCGATAAAAGTAGGCATGTTCGTTTCAGTTGGTCCACCC
ATGCCGATACGAGATAGGGGGGTAATGAGCCGCGGGTAGCGACTCAATAC
AGTAGGTGTCCCGGTATGGTGACGGTTGATTAATGCCAAAGTCCGGTATA
GTGCCGGTAAATTTTCTCGACAGACACAGGCCTGATTAGTGCCAAACCGG
CACCATTTAGGGCTACCCACTATAGTGCCGGTTCAGGCACTATCGAGCCC
CTCAATAGTGCCGGTTCACACCCCCCACACAGCCTTTTTTGCCTCAAGCC
TTCCACACCAGCAGAATTCGGACCCGGTTTACCTTCGAGCTACAGGTTCG
TTCGGTTTCCGTCGGTACGCGTGGCGTCTTCAAAAGTATAAAAGTTTACC
GATCGACCAAATTCCACCACAGAAGTTCAGCCAAATAGGTTGGGATTTCA
GTAGTGAGGCGGGCGAAATGGAAGGTGGTGGTAGTAACGAAGGATGTGGA
AAGAATATCGAAGGATAGTAGTGATGATGGGGGAGGAAAATATGGCGTCG
AAGGGAACAAGAGTTTCGAGCCAGATAGCCTTCCTCACAACAAACGCCGC
AGGGGGCCAGAGTCTAGAGTTGAACGCCAATGAAAGTGGAGATATTTGTG
AAGAGAGTAGTGGGGTGGTCAACACGCAAGGATAAGGGATGCAAACAATC
CGAAACGAACGAGTGTTCAATGTAGTAGCCTTGGCAGACGCGTGCATTTC
TCCTCTGTTGCTACCGTCTGTCTTTTTTGTCCGGAGAATAGCTCAGCCTC
CTCCATGACACCCTCCCACGGGGCCCTAGATCAGGGCCTTGAGAAACATT
TATTTTCTGTTTTCATCCGCACTGAGACTGACGACACGTCTTTTGGTTGG
CCAGTCGTTTTTCTTGCTTCTGAAGGCTTGGGTCTTCTCTCTAGCTTTTT
ATCGAAGGAACAGGGGAGTTTGTTATCTTCTTCATACCCCTTTGGGTTGC
ATCTGCTTTAGTTGTGCAAATGTACGGAGCACTACATCCATGGTGTACCT
CCAAATGTACATCGGGTGCGTGCATGATGAGCGTCTATCATTCGCTGTTG
AGGGGCGCCTTTGAAGTTGCCTGCATAGTGCTACGGCCTTCTTGCCACAG
CAATAGATCATTTGATAGCGAGGTGCCTTTTGATCGGGCAGCACGGTCTA
CGGTTTAAAGGTATCGGCGACGTTCACTATCTTAGTGCGTGCTGAAGTGG
GAAGAGAACAATATTGCAACAAATGCATCTGGTCAAGTCTATCATAATGT
GACGAAAGCAGTGTTTTCGATAGGCTAGCAGCCTCACGAAACTTAAAGAA
GCCCGCCCACGTCGCTCGCCTCACCATTGATCCGTTACCGTTCGTTTGGT
ACTCTGTCAGCCCCGCACAACGTAAGCGCTGCACCCTGAAGTCGAACAGT
CCTTACGAGTGCCAAGCCCGCACTATTGAGGTATTTTTAGACCCTGAATA
TTGCCCGCTTGGCACTATTAAAGCACAATTCTGAATGGTGCCGGTGGCCG
GTATAGTACCGGCCCACCCCCGAGTCTTGGAACGGTAGGGATAGCACATT
ATGGCCCAGAACCTTCGGTTATTCAGATGAGTAACCAACCAATAATTTTC
GAATATCAACTCCGATTCCAAATTTCAATCGTGTTTCATCTAGCCCATCG
GAATACCTATCACGTCATCTATTCATATTTTGTCAATGTCCATTTCAGGC
TGAGATACGGAGCTTCTCACGTTTGAGACTCAGAAGGGATTCGTGCACCC
CTATCGTTGCATGGGTCCCCCCTGGACACATAGCGGCACTATTCCGGGAC
ACCTACTACGGTACCTTGCAGTAGTCTATGTGCGATGCTGTGCAAGGTGA
GAGACAAGCTGCTTCCAGGCAGCAACGCGGCAACCCAGGAACGCGCAACT
CGTTTTCTTGCGGATTTATTTTTTGACGGATCTTCCAAGACGAATGCACT
CGCTCCCGCTGGAAGTTTGTTGAAAATATTCCACATCAACGGCAGGGAAA
CATGCACACATGCTCGCCTCTACTACAGCAGTAGTACCGCCAAACGATCG
GCACCTAGCAGTACTGACACAGACAGGGATTGAACAGTGGTAGCTTACAC
GAATGGACCTGTGGTGCTGCTGCGGCTGCTGTAATTGCAATGACTGACTC
TCATCTACACCCTGGCGCCTGTCACCAAAAATATGGGCTCTTCAGCTCTT
CTTCTGGTGCATTTTTTTCCCTTGGCACGATTTATTTCCAGGTGGACCCT
CCCCCCACACCGAAGCAACTGCAATAACAAAGGTATCCGCCACGAGCGTG
TCCATGCTCCGTCTTGCGTGGTGACCGACGCAGACTAGGAGGCTGTGGGA
CGCTCAGAAGTTGCGGGTGCGAGAGTCTGCCACAGCCCGAAGAAAACCGC
TGCGTCTGCTTTGATCAGTTTGGGGTAGTTGTTTTTCGCCCCGGGCGCAG
ATTTCGGTTTTACCGATGATCCCTCCCCACACACCGCAGCCACAGCAGTG
ACAACGACACCAGCCACGAGCTGTATGTATGTATGGGTCCCTTCCCTCGC
CAGCGCTGCCTTGCCCCTCCCAGCGGTGGTACGTCTTTAGCTGAGTGCTT
CCTCTGTTTTCCTGGTTTGAACCGGGCAACTGCTACGCGTGTGTCTGGCG
TGTGTGTGCGAGATCTCCGATTTCCTACATTTCCTCTACAACCCCCCGGG
TAAAGGGGCAAAAAACGCCAACGATTTTGGGGACACACGTCTGTCAAGCA
CGGCCATGGTCAGAGCGTGACCAAACCTATGCGACGAAGAGTGCCCTAAT
CAGGTTCCTGCTCACAAGCCAGCAGATCGTAAATCGGTGCTCTATAAACC
TCGCTCTGGTCTAACTAATGCGATAATTTTGACTTGCCGTAATTCGGTGA
AATTCGCACAAGGGCCCCTCCGTCGCGTTGGTTGGAAAAGCCCGATGTTG
AGAGCGTTTTTCTCCTCCCGAGTACGAAGGAAAAAAGTGTCGCGCATTTA
ATGGACTGTCGCCTCTGGAAACAACACTTGGTTGTATGGTTCGAGCTTCC
TGGTTTGGTTTGAGGCGGTGTTTGACATCCGCTTTGAAGTACGGGCTTTC
ATCTAGGACGACCCGTCCAGGGATATGGTGCGGAATGCGTGGGTTGTGTT
ATCATCACAGAACATGAACGGAACGGAATGCCCAACGCAGCGTGCAGGTA
GTAAGACTCCACTTGTACTACATGCCACTTGTCGTGTGGCTTTCTTGTTT
CTGGTGTACGTCTGGTGCCCCCACACACGACCTGACGCCTTTATCTTGTC
GAAACATGTTGCTCTGTCCACCGCCCCCGCTTGTGGTCGACTTCGATGCT
ACCAGATGCACCAGCTCGAGGACCCCACGAGTCGGCACTTTTCAGATCAC
GTGGTGCGGACTCCGGAGCGAACGGGTGCATCGCAGGGCGTACATGACTC
TTCCTTCGCCCACAACGGGTCTGATTCGTCGGTGCTAAGATGATCATGTT
TCGCCTACTCGATCACCGTTGGGGGTTGGTAGGTGCTTCGTCTTGTCATC
TTTGAAAGGGTTTGTTTGGCATGAAGTGTTCAACATTGTCGGCAGGCATT
GTGTTCGTTTGGAACCCACGTGGAACGCGTTGGTTCGTGCATCAGGGCAG
GTTTGAAGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5592:585..6944+

>mRNA_Ecto-sp13_S_contig5592.15908.1 ID=mRNA_Ecto-sp13_S_contig5592.15908.1|Name=mRNA_Ecto-sp13_S_contig5592.15908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5592:585..6944+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAGGAGCGAGGGCATGGCGGATGTTGATTATGACGGGCCTAGGAA
AACAAGCAAGGGTATGGGTGGTGAAGTCGAGGCTGGAGGCGGGGAGGGAG
TCCGAGACATCGCCGCTGGGCTTGGAAGGAACAGCGTGGTTCACACGGCC
AGCAACGACGGATGTGTGGTTGGCGCCGAGGGCGGAGACGAAGGCTTACG
GTTGGAGGTGCTTCTCCTGTTAGGGATCGGGCTGGAGGGGTTGTTTCGCA
CGGTGTGGGGCTTTCTTTGA
back to top