mRNA_Ecto-sp13_S_contig5579.15887.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5579.15887.1
Unique NamemRNA_Ecto-sp13_S_contig5579.15887.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5579.15887.1 vs. uniprot
Match: A0A6H5JXJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 7.100e-34
Identity = 76/94 (80.85%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 EWEALRRENEDLRRQVALSEKRCGALSEMQRLADDALAAAHPLPFSSPPANTTAPERPPPPRQEKTDGVLSPAGVPFPASSVEEGEEGRREQCA 282
            EWEALRREN+DLRRQVALSEKRCGALSEMQRLADDALAA HPLPFSSPPA T APERP PPRQE TDGVLS       ASSVEEGEE     CA
Sbjct:  497 EWEALRRENDDLRRQVALSEKRCGALSEMQRLADDALAATHPLPFSSPPAGTMAPERPSPPRQEATDGVLS------LASSVEEGEERXXXXCA 584
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BLAST of mRNA_Ecto-sp13_S_contig5579.15887.1 vs. uniprot
Match: D8LAY5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY5_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.380e-23
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 EWEALRRENEDLRRQVALSEKRCGALSEMQRLADDALAAAHPLPFSSPPANTTAPER 171
            EWEALRRENEDLRRQVALSEKRCGALSEMQRLADDALAA HPLPF SPPA TTAPER
Sbjct:  656 EWEALRRENEDLRRQVALSEKRCGALSEMQRLADDALAATHPLPFCSPPAGTTAPER 712
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5579.15887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXJ1_9PHAE7.100e-3480.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAY5_ECTSI1.380e-2394.74Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5579contigEcto-sp13_S_contig5579:68..865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score105.1
Seed ortholog evalue1.9e-20
Seed eggNOG ortholog2880.D8LAY5
Model size311
KEGG koko:K17579
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Cds size309
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463772.9498508-CDS-Ecto-sp13_S_contig5579:68..3121681463772.9498508-CDS-Ecto-sp13_S_contig5579:68..312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5579 69..312 -
1681463772.9739022-CDS-Ecto-sp13_S_contig5579:800..8651681463772.9739022-CDS-Ecto-sp13_S_contig5579:800..865Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5579 801..865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5579.15887.1prot_Ecto-sp13_S_contig5579.15887.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5579 69..865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5579.15887.1

>prot_Ecto-sp13_S_contig5579.15887.1 ID=prot_Ecto-sp13_S_contig5579.15887.1|Name=mRNA_Ecto-sp13_S_contig5579.15887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
EWEALRRENEDLRRQVALSEKRCGALSEMQRLADDALAAAHPLPFSSPPA
NTTAPERPPPPRQEKTDGVLSPAGVPFPASSVEEGEEGRREQCATGEGGD
EDG
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mRNA from alignment at Ecto-sp13_S_contig5579:68..865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5579.15887.1 ID=mRNA_Ecto-sp13_S_contig5579.15887.1|Name=mRNA_Ecto-sp13_S_contig5579.15887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5579:68..865- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTGGGAGGCACTCAGGCGGGAAAATGAGGACCTGCGGCGGCAGGTTGC
GCTGTCGGAGAAGAGGTGAACGTTTGCGTGTGAAGCCCGAGGAGCAGATG
TGACTCCGGGTACATAAATCTCACGGCGGACATGGCCTTTTGTGTTCTCG
GATGTCCGGCTGTGATTATTATATTGATCACCACTTTTTTTTGTTGCTGT
TGCGTTTTCCGCTGTGGCGGTCTCTACTGCACCGTTTGCGATCGACTGAC
TGATCACTCGTACCTGTCCCATTCTAGTATCAGCCCCGCGTCAGCATGCC
TCATTTCGAAACAGAGCACTCGACGAAGTTCTTCAGCACACGACAGCCGC
AAGTATGTTGCCGACTTACAATGCTCTTCAATTGTACGACAGCCGCAAGC
ATCGTGCAAGGTGGCAACACAACACATGACGCGTGGATTTAACCCACATG
TCCAGCTCTCGCTTCCCTCCAGCTTCACGCCCCCAAAAGACTCGACCCAA
CCCCCAGCGTGCGCAGTCAACCCCCGTCGAAACGGCTCCCGGCTTCCCCC
AAGGTGCGGCGCCCTCTCGGAGATGCAACGCCTAGCGGACGACGCCCTCG
CCGCCGCCCACCCGCTCCCGTTCTCCTCGCCGCCCGCGAACACGACAGCA
CCAGAACGCCCGCCACCGCCGCGGCAGGAAAAGACCGACGGTGTACTTTC
CCCGGCCGGTGTACCTTTCCCGGCGTCTTCCGTCGAGGAAGGAGAGGAAG
GGCGCCGAGAACAGTGCGCAACAGGCGAGGGTGGTGACGAGGACGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5579:68..865-

>mRNA_Ecto-sp13_S_contig5579.15887.1 ID=mRNA_Ecto-sp13_S_contig5579.15887.1|Name=mRNA_Ecto-sp13_S_contig5579.15887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5579:68..865- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTGGGAGGCACTCAGGCGGGAAAATGAGGACCTGCGGCGGCAGGTTGC
GCTGTCGGAGAAGAGGTGCGGCGCCCTCTCGGAGATGCAACGCCTAGCGG
ACGACGCCCTCGCCGCCGCCCACCCGCTCCCGTTCTCCTCGCCGCCCGCG
AACACGACAGCACCAGAACGCCCGCCACCGCCGCGGCAGGAAAAGACCGA
CGGTGTACTTTCCCCGGCCGGTGTACCTTTCCCGGCGTCTTCCGTCGAGG
AAGGAGAGGAAGGGCGCCGAGAACAGTGCGCAACAGGCGAGGGTGGTGAC
GAGGACGGG
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