mRNA_Ecto-sp13_S_contig2012.6582.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig2012.6582.1 vs. uniprot
Match: D7FH68_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH68_ECTSI) HSP 1 Score: 539 bits (1389), Expect = 2.610e-192 Identity = 273/291 (93.81%), Postives = 280/291 (96.22%), Query Frame = 1
Query: 1 MLCSCARRTGQITYVEVGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSNYIGYRSVEANQEDPTAKLELKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEDTKDDILLNFAPSDRVMIVGRVGMGVTMLVAITILVLPCRDIVFLVMDSVAEKLQGWCDGGKDYLPVDGSGEELTTPGGTRVNKTRTFFLAVRHVGTTVVIMGFSLFCALSVPGVGVVWSICGSSVRLLV 873
MLCSCARRTGQITYVEVGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSN+IGYRSVEANQEDPTAKL LKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYE TKDDILLNFAPSDRVMIVGR+GMG+TMLVAITILVLPCRDIVFLVMDSVAEKLQ WC GGK+YLPVDG+GE LTTPGGT V KTR FFLAVRHVGTTV IMGFSLFCALSVPGVGVVWSICGSSV ++
Sbjct: 1 MLCSCARRTGQITYVEVGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSNHIGYRSVEANQEDPTAKLGLKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEGTKDDILLNFAPSDRVMIVGRLGMGLTMLVAITILVLPCRDIVFLVMDSVAEKLQEWCAGGKEYLPVDGTGEVLTTPGGTMVTKTRAFFLAVRHVGTTVAIMGFSLFCALSVPGVGVVWSICGSSVGFMI 291
BLAST of mRNA_Ecto-sp13_S_contig2012.6582.1 vs. uniprot
Match: A0A835YKB4_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB4_9STRA) HSP 1 Score: 209 bits (531), Expect = 4.840e-61 Identity = 129/342 (37.72%), Postives = 178/342 (52.05%), Query Frame = 1
Query: 49 VGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSD---------QSNY--------------------------------------IGYRSVEANQEDPTAKLELKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEDTKDDILLNFAPSDRVMIVGRVGMGVTMLVAITILVLPCRDIVFLVMDSVAEKLQGWCDGGKDYLPVDGSGEELTTPGGTRVN--------------------KTRTFFLAVRHVGTTVVIMGFSLFCALSVPGVGVVWSICGSSVRLLV 873
V + AFG G TT +L+ MT+FV +AYM+LVRDIWSG++ ++G +++ +SN+ IGYR E N E P A+ + + I+ AFPI L+F C FNILSVH+ VNPTRERLKG++H ++G +Y+ L GY YAY +T+DDILLNFAPSD+V++ GR+G+G+TMLVAI +L+LPCRD + + E + K + G+G + + +N R A RH TTV +M F LF A+S+PGV +VWSICGSSV V
Sbjct: 49 VAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLYEVVTAKFSARKTTPLISGNGASSSRGNYSSLNGELGATGSFDTSSMDANVAAALRRVMKAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFV 390
BLAST of mRNA_Ecto-sp13_S_contig2012.6582.1 vs. uniprot
Match: A0A7S2UXQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXQ2_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.120e-53 Identity = 111/311 (35.69%), Postives = 174/311 (55.95%), Query Frame = 1
Query: 85 VTTSVLMAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSNY--------------------------------------IGYRSVEANQEDPT--AKLELKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEDTKDDILLNFAPSDRVMIVGRVGMGVTMLVAITILVLPCRDIVFLVMDSVAEKLQGWCDGGKDY-----LPVDGSGEELTTPGGTRV---NKTRTFFLAVRHVGTTVVIMGFSLFCALSVPGVGVVWSICGSSVRLLV 873
+ T L+ MT F+ +AY +L+RDI SG+VE +G + +QSNY I YRS+ N E+P A L + D +GD++ + PI L F CHFN+LSVHS VNPTR+R+K ++H M L++ +Y+++ L GY YAYE+TKD+I LNF+ SD++++VGRVG+ T+ A+ ++ +PCR+ + +S+A+ L+ C G + + S ++ T+ G + N+ T V+HV +T ++ F L A+ PGV VVWS+CGSS+ ++V
Sbjct: 3 IVTLCLLLMTFFIMVAYEILIRDIASGLVEFTLGHEITKEQSNYVLVVCNLFVSPLCYFTSLYALRYTCYIGFGSVMVLTASICYRSLSFNAENPMEFAARSLAVTTD-FGDVLYSLPIMSLVFLCHFNMLSVHSQLVNPTRQRVKSMIHSAMSLSTLIYLLMGLLGYFYAYENTKDNIFLNFSFSDKLLVVGRVGLFATLTCALPMMAIPCRENLLEFYNSIADWLEKCCGGTETQGLLTTVQNSPSTQDPTSAGRRNIQMPNERMTTGQLVKHVVSTTFVIAFCLVIAICTPGVAVVWSVCGSSLGMMV 312
BLAST of mRNA_Ecto-sp13_S_contig2012.6582.1 vs. uniprot
Match: A0A7S4D5B8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5B8_HETAK) HSP 1 Score: 173 bits (438), Expect = 1.190e-46 Identity = 123/349 (35.24%), Postives = 174/349 (49.86%), Query Frame = 1
Query: 1 MLCSCARRTGQITYVEVGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSN--------------------------YIGYRSV------------EANQEDPTAKLELKLNAD-SWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEDTKDDILLNFAPSDRVMIVGRVGMGVTMLVAITILVLPCRDIVFLVMDSVA--------------EKLQGWCDGGKDYLPV------DGSGEELTTPGGTRVNKTRTFFLAVRHVGTTVVIMGFSLFCALSVPGVGVVWSICGSSVRLL 870
+LCSCARR+G +YVEV + AFG+ G + T +L +FV +AY VL+RDI SGIVE +G LD D N Y+G+ +V N+ +P+ A+ S D PI +S+ C FN+LSVHS +PTR R+K +H +GL + +Y V A+ GY AY DT ++I NF PS+++++VGR G+ VT+L ++VLPCR+ L EK Q +DY DGS +L G AVRHV TV+I+G +L+ A+ +PGV VVWSI GS++ L+
Sbjct: 127 ILCSCARRSGMPSYVEVAKHAFGKKGGQLITIMLAVFILFVVVAYQVLIRDIASGIVEFFLGYDLDMDGRNKVLYVCVLMIAPLCFFKSLHALRYTCYLGFAAVCLLVGSLVYLGWAFNRAEPSLWATYARPAEASVADFFYVLPILAVSYVCQFNMLSVHSQLKHPTRGRMKTTIHLAIGLATLIYAVGAMAGYSCAYMDTNENIFNNFEPSNKLLLVGRCGLFVTLLCNTPMMVLPCRESALLXXXXXXXXXXXXXXXXGPRLEKTQLLGQESQDYSAEAADSFDDGSQRQLGEGGDGGCGG------AVRHVAFTVLILGLALYLAVCIPGVAVVWSIAGSTMGLV 469
BLAST of mRNA_Ecto-sp13_S_contig2012.6582.1 vs. uniprot
Match: A0A7S4RNK3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNK3_9STRA) HSP 1 Score: 157 bits (396), Expect = 2.270e-41 Identity = 114/360 (31.67%), Postives = 177/360 (49.17%), Query Frame = 1
Query: 1 MLCSCARRTGQITYVEVGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWS--------------------------GIVESVIGETLDSD-----QSNYIGYRSVE---------ANQEDPTAK----LELKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEDTKDDILLNFAPSDRVMIVGRVGMGVTMLVAITILVLPCRDIVFLVMDSVAEKLQGWCDGGKDYLP-VDGSGEE--LTTPGGT----------------------RVNKTRTFFLAVRHVGTTVVIMGFSLFCALSVPGVGVVWSICGSSVRLLV 873
+LCS RRTG +Y +V + A+G + T VL +FV +AYMVLVRDI++ GIV ++I L D + Y+G+ S+ A + P + L +K+ S+ D++ AFPI LSF C FN+L + VNPTR+R++ ++ G + + L L GYLYA +DT +ILLNF P DRV+IVG+VG GVT+ +A+ +++LPCR+ + ++ +L+ W + + + G+ +E + GT V + HV +T++I CA++ PGV VVWSICGSS+ ++
Sbjct: 11 ILCSSGRRTGATSYADVCRRAYGPGLELFLTLVLFVFLMFVMVAYMVLVRDIFTPIVSPLATSFMQGEPDTAAVGDYVLLGIVIAMIPFFLQKDLHALRYNCYVGFVSISVLCVAIAYRAWENYPASSSNGSLNIKMFPSSFVDVLFAFPIPILSFMCQFNVLGIQGSLVNPTRQRIRQIIDGAVAASFVLTFSFGLGGYLYAGDDTNGNILLNFEPGDRVIIVGKVGCGVTITLAMAMMLLPCRETLL----ALGPQLRAWKQNNNNEISDMKGTEDEEIASIQSGTSSGYGAVSEEMPLITEAMSGYHHVEAASRLTEILTHVFSTLIIASICYACAVAAPGVAVVWSICGSSLAFII 366
BLAST of mRNA_Ecto-sp13_S_contig2012.6582.1 vs. uniprot
Match: A0A7S4RQ47_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RQ47_9STRA) HSP 1 Score: 156 bits (395), Expect = 9.100e-41 Identity = 116/360 (32.22%), Postives = 177/360 (49.17%), Query Frame = 1
Query: 1 MLCSCARRTGQITYVEVGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWS--------------------------GIVESVIGETLDSD-----QSNYIGYRSVE---------ANQEDPTAK----LELKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEDTKDDILLNFAPSDRVMIVGRVGMGVTMLVAITILVLPCRDIVFLVMDSVAEKLQGWCDGGKDYLP-VDGSGEE--LTTPGGT----------------------RVNKTRTFFLAVRHVGTTVVIMGFSLFCALSVPGVGVVWSICGSSVRLLV 873
+LCS RRTG +Y +V + A+G + T VL +FV +AYMVLVRDI++ GIV ++I L D + Y+G+ S+ A + P + L +K+ S+ D++ AFPI LSF C FN+L + VNPTR+R++ ++ G + + L L GYLYA +DT +ILLNF P DRV+IVG+VG GVT+ +A+ +++LPCR+ + ++ +L+ W + + + G+ +E + GT V + HV +T++I CA++ PGV VVWSICGSS+ LV
Sbjct: 112 ILCSSGRRTGATSYADVCRRAYGPGLELFLTLVLFVFLMFVMVAYMVLVRDIFTPIVSPLATSFMQGEPDTAAVGDYVLLGIVIAMIPFFLQKDLHALRYNCYVGFVSISVLCVAIAYRAWENYPASSSNGSLNIKMFPSSFVDVLFAFPIPILSFMCQFNVLGIQGSLVNPTRQRIRQIIDGAVAASFVLTFSFGLGGYLYAGDDTNGNILLNFEPGDRVIIVGKVGCGVTITLAMAMMLLPCRETLL----ALGPQLRAWKQNNNNEISDMKGTEDEEIASIQSGTSSGYGAVSEEMPLITEAMSGYHHVEAASRLTEILTHVFSTLIIASICYACAVAAPGVAVVWSICGSSLVSLV 467
BLAST of mRNA_Ecto-sp13_S_contig2012.6582.1 vs. uniprot
Match: A0A6H5J7N9_9PHAE (Aa_trans domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N9_9PHAE) HSP 1 Score: 141 bits (356), Expect = 8.650e-39 Identity = 80/118 (67.80%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 103 MAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSNY--------------------------------------IGYRSVEANQEDPTAKLELKLNADSWGDIMEAFPIFCLSFQC 342
MAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSNY IGYRSVEANQEDPTAKLELKLNADSWGDIMEAFPIFCLSFQC
Sbjct: 1 MAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSNYVLFVALLLVFPACLAKDLHALRHFCYVGFFSALVLTAAIGYRSVEANQEDPTAKLELKLNADSWGDIMEAFPIFCLSFQC 118
BLAST of mRNA_Ecto-sp13_S_contig2012.6582.1 vs. uniprot
Match: A0A7S1BVU6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVU6_9STRA) HSP 1 Score: 134 bits (336), Expect = 5.560e-32 Identity = 107/377 (28.38%), Postives = 167/377 (44.30%), Query Frame = 1
Query: 1 MLCSCARRTGQITYVEVGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSN-----------------------------YIGYRSVE--------------ANQEDPTAKLELKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEDTKDDILLNFAPSDRVMIVGRVGMGVTMLVAITILVLPCRDIVFLVMDSVAEKLQGWCDGGKD-------------YLPVDGSGEELTTPGGTRVNKTR------------------------------TFFLAVRHVGTTVVIMGFSLFCALSVPGVGVVWSICGSSVRLLV 873
+LC CARRTG TY EV + FG T VL + F +AYMVLVRDIWS + G TL + YI + S+ A ED K+ L D + D++ A P+F LSF +N+LSVH V+PTR R++ ++ G++G L+ + GY YA + T D+ILLNF P D+V+I+G++ G+++ +A+ ++VLP R+ ++ V Q W + ++ L + ++ GT V+ T + H+G+T++++ L A++ P V VVWSICGSS+ ++
Sbjct: 127 ILCCCARRTGVSTYGEVARRVFGRKTECGVTIVLFTLLAFFLVAYMVLVRDIWSTVYTFATGRTLSVGPAGGETVLLVGVVAMVSPFMLQRSLHPLRYNCYISFASISVLCVSIIYRAFQRGAMTEDFWDKV-LWYTTD-YRDVLFALPLFVLSFLATYNMLSVHCALVHPTRRRVREVIGGSIGSCCILFYAFGIGGYCYALDHTLDNILLNFDPHDKVIILGKISFGISLTLAMPLVVLPARECFLMIPVQV----QAWINETRECQTTLLHSQERARLLSSTRARHPSSSSMGTAVSVTSFDSEGAFDHDASSLSLGKVIAKPVIETVDPDTLEQIIHMGSTLLVVATCLVAAVAAPRVAVVWSICGSSLAFVI 497
BLAST of mRNA_Ecto-sp13_S_contig2012.6582.1 vs. uniprot
Match: A0A7S2R5W0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R5W0_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.730e-27 Identity = 82/299 (27.42%), Postives = 139/299 (46.49%), Query Frame = 1
Query: 1 MLCSCARRTGQITYVEVGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSN---------------------------------------------YIG------------YRSVE----ANQEDPTAK-LELKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEDTKDDILLNFAPSDRVMIVGRVGMGVTMLVAITILVLPCRDIVFLVMDSVAEKLQGWCDGGKDYLPVDGSGEELTT 711
+LCSCARRTG +Y EV +A+FG+ + + +L + V +A+MVLVR IW+ I+ + ++ N Y+G YR+ E +N T + + D++ D + AFPI L+F C +NI + + ++PTR+RL+ ++H ++ + L V + GYLY+ +TKD+ILLNF SDR+++ GR+G G +++ + I+ LPCRD + + ++ W Y + + +E T
Sbjct: 122 ILCSCARRTGSQSYGEVARASFGDAMDLFISLLLFVFLMLVIVAFMVLVRGIWTPILLEIASFIFSPNEGNTTNNSSSINDVKMVNTYGDWFLLGIILVMTPFLLKKDLHALRYNCYVGFISITFLAFAIMYRAAERHLFSNSLSTTDETFTILWFTDNFADALYAFPIIALAFLCTYNIHQIQNTIIHPTRKRLRTVIHSSVTVCFVLMYVFGVAGYLYSGNNTKDNILLNFNVSDRLILFGRMGCGTNLMLNLAIVTLPCRDSMLAIWPQF---IKLWTKKSNKYNQIHSNDDESCT 417
BLAST of mRNA_Ecto-sp13_S_contig2012.6582.1 vs. uniprot
Match: A0A7S4VL45_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VL45_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.580e-26 Identity = 61/142 (42.96%), Postives = 88/142 (61.97%), Query Frame = 1
Query: 286 DSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEDTKDDILLNFAPSDRVMIVGRVGMGVTMLVAITILVLPCRDIVFLVMDSVAEKLQGWCDG---GKDYLPVDGSGEE 702
D + DI+ AFPI LSF FN+LSVH VNPTR+R+K +L G++G+ + ++ LCGYLYA DT D+ILLNF SD +++ R+G G T+L + ++ LPCR+ + SV E Q W + + YL + G+E
Sbjct: 284 DKFSDILFAFPIIALSFFSSFNVLSVHGALVNPTRKRVKLVLDGSIGICFFFFYIVGLCGYLYARNDTLDNILLNFPLSDNAILLSRIGYGFTLLFGMPLVTLPCREAIL----SVPEHFQEWREERARAQKYLSMSKVGDE 421 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2012.6582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig2012.6582.1 >prot_Ecto-sp13_S_contig2012.6582.1 ID=prot_Ecto-sp13_S_contig2012.6582.1|Name=mRNA_Ecto-sp13_S_contig2012.6582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=291bp MLCSCARRTGQITYVEVGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRback to top mRNA from alignment at Ecto-sp13_S_contig2012:712..9431- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig2012.6582.1 ID=mRNA_Ecto-sp13_S_contig2012.6582.1|Name=mRNA_Ecto-sp13_S_contig2012.6582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2012:712..9431- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2012:712..9431- >mRNA_Ecto-sp13_S_contig2012.6582.1 ID=mRNA_Ecto-sp13_S_contig2012.6582.1|Name=mRNA_Ecto-sp13_S_contig2012.6582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2012:712..9431- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |