mRNA_Ecto-sp13_S_contig2011.6580.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2011.6580.1
Unique NamemRNA_Ecto-sp13_S_contig2011.6580.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2011.6580.1 vs. uniprot
Match: A0A6H5JCY2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY2_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 3.110e-91
Identity = 213/241 (88.38%), Postives = 215/241 (89.21%), Query Frame = 1 
Query:    1 NGDAGKAGGTRLPRRQRDRERKAXXXXXXXXXSLLPLTGPSALAATINSTLTVTTGRVAGERAAGESITTSDSSFTSDSLSGXXXXXXXXXXXXXFGVATGDAGDVTPPPGHSLPWEHPPASPPPACMPNLHQSSGSEGPSGSEDDEGFGLGGGSIEYRKFLLRRSTSSAGAKETASRVSTPGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGGSAAGLPSTSASRQSANK 723
            NGD GKAGG RLPRRQRDRER A         SLLPLTGPSALAATINSTLTVTTGR+AGERAAGESITTSDSSFTSDSLSGXXXXXXXXXXXXX   A GD GDVTPPPGHSLPWEHPPASPPPACMPNLHQSSGSEGPSGSEDDEGFGL GGSIEYRKFLLRRST SAGAKETASRVSTPGRR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGGSAAGLPSTSAS + ANK
Sbjct:  151 NGDDGKAGGARLPRRQRDRERNAKGSSPPPSPSLLPLTGPSALAATINSTLTVTTGRLAGERAAGESITTSDSSFTSDSLSGXXXXXXXXXXXXXXXXAAGDDGDVTPPPGHSLPWEHPPASPPPACMPNLHQSSGSEGPSGSEDDEGFGLCGGSIEYRKFLLRRSTLSAGAKETASRVSTPGRRGLGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGGSAAGLPSTSASSRPANK 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2011.6580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCY2_9PHAE3.110e-9188.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2011contigEcto-sp13_S_contig2011:10391..11116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size728
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004650.1
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463011.9842093-CDS-Ecto-sp13_S_contig2011:10390..111161681463011.9842093-CDS-Ecto-sp13_S_contig2011:10390..11116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2011 10391..11116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2011.6580.1prot_Ecto-sp13_S_contig2011.6580.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2011 10391..11116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2011.6580.1

>prot_Ecto-sp13_S_contig2011.6580.1 ID=prot_Ecto-sp13_S_contig2011.6580.1|Name=mRNA_Ecto-sp13_S_contig2011.6580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
NGDAGKAGGTRLPRRQRDRERKAKGSSPPPPPSLLPLTGPSALAATINST
LTVTTGRVAGERAAGESITTSDSSFTSDSLSGGGGGGGGGGDGGGFGVAT
GDAGDVTPPPGHSLPWEHPPASPPPACMPNLHQSSGSEGPSGSEDDEGFG
LGGGSIEYRKFLLRRSTSSAGAKETASRVSTPGRRGLGTGSDNVEHKKFL
LRRASSSAGENDTAGASSSPPGGGSAAGLPSTSASRQSANKC
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mRNA from alignment at Ecto-sp13_S_contig2011:10391..11116+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2011.6580.1 ID=mRNA_Ecto-sp13_S_contig2011.6580.1|Name=mRNA_Ecto-sp13_S_contig2011.6580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2011:10391..11116+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGAGATGCCGGCAAGGCAGGAGGGACCCGGTTACCCCGGCGACAACG
GGACCGGGAACGGAAAGCGAAAGGATCATCCCCGCCGCCGCCGCCGTCCC
TGCTGCCGCTCACGGGCCCGTCGGCGCTGGCGGCGACAATAAACAGCACC
CTGACCGTCACCACCGGAAGAGTGGCCGGGGAGAGGGCGGCGGGGGAAAG
CATCACTACGTCGGATTCGTCGTTTACCAGCGACAGCCTGAGCGGCGGCG
GCGGCGGTGGCGGTGGCGGCGGCGATGGTGGTGGGTTTGGCGTCGCCACG
GGGGACGCCGGCGATGTCACTCCTCCCCCGGGCCACTCGTTGCCGTGGGA
GCACCCCCCGGCGTCGCCGCCGCCGGCGTGCATGCCGAACCTCCACCAGT
CCAGCGGTAGCGAGGGCCCCAGCGGGAGCGAAGACGACGAGGGCTTCGGG
CTGGGCGGCGGCAGCATCGAGTACCGGAAGTTTCTGCTGCGCAGGTCCAC
CTCGTCGGCTGGGGCTAAGGAGACCGCCTCCCGCGTGTCGACGCCGGGAA
GAAGAGGCCTGGGCACCGGCAGCGACAACGTCGAGCACAAGAAGTTTCTG
CTGCGCAGAGCGAGCTCGTCGGCTGGCGAAAACGATACTGCCGGCGCGTC
GTCGTCGCCGCCCGGCGGAGGTTCGGCCGCCGGCTTGCCGAGCACCTCGG
CCTCCCGTCAATCCGCCAACAAGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2011:10391..11116+

>mRNA_Ecto-sp13_S_contig2011.6580.1 ID=mRNA_Ecto-sp13_S_contig2011.6580.1|Name=mRNA_Ecto-sp13_S_contig2011.6580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2011:10391..11116+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGAGATGCCGGCAAGGCAGGAGGGACCCGGTTACCCCGGCGACAACG
GGACCGGGAACGGAAAGCGAAAGGATCATCCCCGCCGCCGCCGCCGTCCC
TGCTGCCGCTCACGGGCCCGTCGGCGCTGGCGGCGACAATAAACAGCACC
CTGACCGTCACCACCGGAAGAGTGGCCGGGGAGAGGGCGGCGGGGGAAAG
CATCACTACGTCGGATTCGTCGTTTACCAGCGACAGCCTGAGCGGCGGCG
GCGGCGGTGGCGGTGGCGGCGGCGATGGTGGTGGGTTTGGCGTCGCCACG
GGGGACGCCGGCGATGTCACTCCTCCCCCGGGCCACTCGTTGCCGTGGGA
GCACCCCCCGGCGTCGCCGCCGCCGGCGTGCATGCCGAACCTCCACCAGT
CCAGCGGTAGCGAGGGCCCCAGCGGGAGCGAAGACGACGAGGGCTTCGGG
CTGGGCGGCGGCAGCATCGAGTACCGGAAGTTTCTGCTGCGCAGGTCCAC
CTCGTCGGCTGGGGCTAAGGAGACCGCCTCCCGCGTGTCGACGCCGGGAA
GAAGAGGCCTGGGCACCGGCAGCGACAACGTCGAGCACAAGAAGTTTCTG
CTGCGCAGAGCGAGCTCGTCGGCTGGCGAAAACGATACTGCCGGCGCGTC
GTCGTCGCCGCCCGGCGGAGGTTCGGCCGCCGGCTTGCCGAGCACCTCGG
CCTCCCGTCAATCCGCCAACAAGTGC
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