mRNA_Ecto-sp13_S_contig20003.6525.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20003.6525.1
Unique NamemRNA_Ecto-sp13_S_contig20003.6525.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20003.6525.1 vs. uniprot
Match: D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI)

HSP 1 Score: 458 bits (1178), Expect = 5.990e-154
Identity = 232/252 (92.06%), Postives = 238/252 (94.44%), Query Frame = 1 
Query:  115 FVKRLRSGRHTPLPWNNDKERRVFLTPAHLFTDAFDFRNQGGVSYPIKATLLSLFASTSQAFRRQPGV-PLVGLSAPRVRWQDDLGFILEVISVLQKGCRARLAIADKVEEVFFRLGLLLCDADSPERHLLLGMKRVTNKTLMPCHVCPIGQEDLANGDYDIVRNRRTDDQTEYALKVISTATTGTQRQVLSSKHGVTPQEVENPFRKHVHMNMVRTFGIDVFHQDAQNSLRKIFKRLLGGLSKAKGVPLLS 867
            F  R ++G H    WNNDKERRVFLTPAHLFTDAFDFRNQGGVSYPIKATLLS FASTSQAFRRQPG  PLVGLSAPRVRWQDDLGFILEVISVLQKGCRARLAIADKVEEVFFRLGLLLCDADSPER LLLGMKRVTNKTLMPCHVCPIGQEDLA+G+YDIVRNRRTDDQTEYALKVISTA TGTQRQ LSSKHGVTPQEVENPFRKHVH+NMVRTFGID+FHQDAQNSLRKIFKRLLGGLSKAKGVPLLS
Sbjct:  459 FYDRRQNGSH----WNNDKERRVFLTPAHLFTDAFDFRNQGGVSYPIKATLLSPFASTSQAFRRQPGAWPLVGLSAPRVRWQDDLGFILEVISVLQKGCRARLAIADKVEEVFFRLGLLLCDADSPERQLLLGMKRVTNKTLMPCHVCPIGQEDLADGNYDIVRNRRTDDQTEYALKVISTAPTGTQRQALSSKHGVTPQEVENPFRKHVHLNMVRTFGIDLFHQDAQNSLRKIFKRLLGGLSKAKGVPLLS 706
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20003.6525.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI)

HSP 1 Score: 431 bits (1108), Expect = 7.690e-142
Identity = 237/319 (74.29%), Postives = 240/319 (75.24%), Query Frame = 1 
Query:    1 DGVDLDTSKLVGRCEVVVSHDVHTGEDGSALPSFGGVGFVKRLRSGRHTPLP-----------------------------WNNDKERRVFLTPAHLFTDAFDFRNQGGVSYPIKATLLSLFASTSQAFRRQPGV-PLVGLSAPRVRWQDDLGFILEVISVLQKGCRARLAIADKVEEVFFRLGLLLCDADSPERHLLLGMKRVTNKTLMPCHVCPIGQEDLANGDYDIVRNRRTDDQTEYALKVISTATTGTQRQVLSSKHGVTPQEVENPFRKHVHMNMVRTFGIDVFHQDAQNSLRKIFKRLLGGLSKAKGVPLLS 867
            DGVDLDTSKLVGRCEVV S DVHTGEDGSALPSF GVGFVKRLRSGRHTPLP                             WNNDKERRVFLTPAHLFTDAFDFRNQGGVSYPIKATLLS FASTSQAFRRQPG  PLVGLSAPRVRWQDDLGFILEVISVLQKGCRARLAIADKVEE                                          DLA+G+YDIVRNRRTDDQTEYALKVISTATTGTQRQ LSSKHGVTPQEVENPFRKHVH+NMVRTFGIDVFHQDAQNSL KIFKRLLGGLSKAKGVPLLS
Sbjct:  336 DGVDLDTSKLVGRCEVVGSDDVHTGEDGSALPSFRGVGFVKRLRSGRHTPLPSPDPAVKHLPWRPEGAERLFYDRRQNGSHWNNDKERRVFLTPAHLFTDAFDFRNQGGVSYPIKATLLSPFASTSQAFRRQPGAWPLVGLSAPRVRWQDDLGFILEVISVLQKGCRARLAIADKVEE------------------------------------------DLADGNYDIVRNRRTDDQTEYALKVISTATTGTQRQALSSKHGVTPQEVENPFRKHVHLNMVRTFGIDVFHQDAQNSLLKIFKRLLGGLSKAKGVPLLS 612
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20003.6525.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.380e-37
Identity = 97/310 (31.29%), Postives = 148/310 (47.74%), Query Frame = 1 
Query:    4 GVDLDTSKLVGRCEVVVSHDVHTGEDGSALPSFGGVGFVKRLR----------SGRHTPLPWN------------------NDKERRVFLTPAHLFTDAFDFRNQGGVSYPIKATLLSLFASTSQAFRRQ-PGVPLVGLSAPRVRWQDDLGFILEVISVLQKGCRARLAIADKVEEVFFRLGLLLCDADSPERHLLLGMKRVTNKTLMPCHVCPIGQEDLANGDYDIVRNRRTDDQTEYALKVISTATTGTQRQVLSSKHGVTPQEVENPFRKHVHMNMVRTFGIDVFHQDAQNSLRKIFKRLLGGLSKA 846
            G ++D S++ GRC+VV           S+   F   GF++R            SG+   LPW                   N     VF  P  +FTDAF+F  +GG  Y I AT  ++  ST++AFRR+     L  L APR RW+ +L  +   I  +Q GCRAR+ I  +                         + R  + T  PC+VC + Q++L +G YDI  N R  D  +++L ++    T T++ ++S++ GV    V NP R+H+H+N V++ G+D+ HQD  NS  +  K ++ GLS A
Sbjct:  245 GEEIDISRIEGRCDVVPHVQGAGAGSSSSGRVFSAAGFIRRCGKEKYKKVWSPSGQPKVLPWRFEGLYGLFFDKRAARVYFNKAGLPVFSIPLVIFTDAFNFFQRGGSPYSINATHFTI-GSTTRAFRRRLESWDLCSLGAPRARWEQELDGVFGTIGKMQNGCRARVCIDGE------------------------PVVRSGSGTFKPCNVCNVTQDELGDGQYDIAGNARMMDGIDHSLSLVRKEATKTKQGIVSTREGVVGAFVRNPVREHLHLNPVKSIGVDIMHQDPLNSFGRAMKAMVDGLSPA 529
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20003.6525.1 vs. uniprot
Match: D7FGT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT2_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 2.490e-30
Identity = 67/110 (60.91%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:  115 FVKRLRSGRHTPLPWNNDKERRVFLTPAHLFTDAFDFRNQGGVSYPIKATLLSLFASTSQAFRRQPGVPLVGLSAPRVRWQDDLGFILEVISVLQKGCRARLAIADKVEE 444
            F  R R+G H    WN+D+ER VFLTPAHLFTDAFDFRNQ G                          PLVGLSAPRVRW+DDLGFILE ISVLQKGCRARLA ADKV+E
Sbjct:  107 FHDRRRTGNH----WNHDEERLVFLTPAHLFTDAFDFRNQLGAW------------------------PLVGLSAPRVRWKDDLGFILEAISVLQKGCRARLATADKVKE 188
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20003.6525.1 vs. uniprot
Match: A0A6H5K6B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 7.590e-21
Identity = 57/84 (67.86%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:  115 FVKRLRSGRHTPLPWNNDKERRVFLTPAHLFTDAFDFRNQGGVS----YPIKATLLSLFASTSQAFRRQPGVPLVGLSAPRVRW 354
            F  R R+G H    WNN KERRVFLT AHL TDAFDFRNQ  VS    Y IKATLLS FASTSQAFR+     LVGLSA RVRW
Sbjct:  285 FYDRRRTGNH----WNNGKERRVFLTSAHLSTDAFDFRNQASVSRRASYSIKATLLSPFASTSQAFRQPGAWLLVGLSALRVRW 364
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20003.6525.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.010e-13
Identity = 55/158 (34.81%), Postives = 73/158 (46.20%), Query Frame = 1 
Query:  376 LEVISVLQKGCRARLAIADK-VEEVFFRLGLLLCDADSPERHLLLGMKRVTNKTLMPCHVCPIGQEDLANGDYDIVRNRRTDDQTEYALKVISTATTGTQRQVLSSKHGVTPQEVENPFRKHVHMNMVRTFGIDVFHQDAQNSLRKIFKRLLGGLSKA 846
            +++I  LQ GC+A  +I DK       RLGLL  + DSP   L    K    KT   C  C + + DL N  YDIV+N RT D     L  ++       R  LS   GV      NP +  V  + V   G+D+ HQ A NS +KI   ++  L  A
Sbjct:    1 MKIIRRLQNGCKAEFSIGDKQTVTALVRLGLLTANLDSPLHSLWTNQKHHNAKTERACQACVVPRRDLGNPKYDIVKNARTADGLREDLSRVAATEKKQDRDKLSRALGVVVPRYPNP-QDEVAFDRVEGCGMDILHQSALNSGKKIMGFVMDALDPA 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20003.6525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LJH2_ECTSI5.990e-15492.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW6_ECTSI7.690e-14274.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYQ6_9PHAE2.380e-3731.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGT2_ECTSI2.490e-3060.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6B6_9PHAE7.590e-2167.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWW9_ECTSI1.010e-1334.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20003contigEcto-sp13_S_contig20003:730..3197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size869
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003810.1
Cds size867
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.7144628-CDS-Ecto-sp13_S_contig20003:729..9631681463007.7144628-CDS-Ecto-sp13_S_contig20003:729..963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20003 730..963 +
1681463007.727974-CDS-Ecto-sp13_S_contig20003:1800..20101681463007.727974-CDS-Ecto-sp13_S_contig20003:1800..2010Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20003 1801..2010 +
1681463007.7430902-CDS-Ecto-sp13_S_contig20003:2774..31971681463007.7430902-CDS-Ecto-sp13_S_contig20003:2774..3197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20003 2775..3197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20003.6525.1prot_Ecto-sp13_S_contig20003.6525.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20003 730..3197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20003.6525.1

>prot_Ecto-sp13_S_contig20003.6525.1 ID=prot_Ecto-sp13_S_contig20003.6525.1|Name=mRNA_Ecto-sp13_S_contig20003.6525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=289bp
DGVDLDTSKLVGRCEVVVSHDVHTGEDGSALPSFGGVGFVKRLRSGRHTP
LPWNNDKERRVFLTPAHLFTDAFDFRNQGGVSYPIKATLLSLFASTSQAF
RRQPGVPLVGLSAPRVRWQDDLGFILEVISVLQKGCRARLAIADKVEEVF
FRLGLLLCDADSPERHLLLGMKRVTNKTLMPCHVCPIGQEDLANGDYDIV
RNRRTDDQTEYALKVISTATTGTQRQVLSSKHGVTPQEVENPFRKHVHMN
MVRTFGIDVFHQDAQNSLRKIFKRLLGGLSKAKGVPLLS
back to top

mRNA from alignment at Ecto-sp13_S_contig20003:730..3197+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20003.6525.1 ID=mRNA_Ecto-sp13_S_contig20003.6525.1|Name=mRNA_Ecto-sp13_S_contig20003.6525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20003:730..3197+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCGTGGATCTGGACACCTCGAAGTTGGTAGGGAGGTGTGAGGTCGT
CGTTTCCCACGACGTACACACGGGCGAGGACGGGAGTGCGTTGCCAAGTT
TCGGGGGGGTTGGTTTTGTCAAGAGGCTTCGGAGTGGGCGGCACACACCC
CTGCCTTGGAACAATGACAAGGAGCGCAGAGTGTTCTTGACGCCGGCCCA
CCTGTTCACGGACGCCTTCGACTTTCGCAACCAGGTGTGCATCTCGTTCA
TTTTTTTTTTGCTCGTGTCACTCAATTTTGTACTTGTAGGATTCTGTCAT
GTTTCATGCTTCTGTACTTCTTTCTCTCGCGGCAGCAAGTCTTTTCTCGC
GATGTCTTTTCAGAGGCAAGCAGAAGCGTCGTCGGTAAATTATCGCTCGT
GCCCCGTAGGCCTTCGTATTGCGTGTGGTTGACGGTCAAAGATGCGAAAA
CTGGCTCTATACCCCGGGGGCGGGTTCGGCGTAGACAAAGCCTGGCGAAC
CAATTTAAAAACCCATCCATGACGACAGTTTACAATGTTTGCCTCCACCT
TCATTCATGCATTCGCTGATTCCACATCGCTGTGATTCTTCGCAATGTTC
AAACAGTACCCACCGACGTTTGTTTGCTCATTTACACTTCGTAGCGATGA
ACAATGTTTTTTTTGTGATGTTGGTTTCGGATTCCGATTCGGATCTCATT
AGAATCCTGCCACCATTCATCCCAAGACCAATCATGAAAGAGGTCTGAAT
TTTCGCTGGCAAGTTGCAGTCCGCTCGAGCTGGCTCCAAAGTGGAAAAAC
TGTACGTGCGCGATGTTTTGTACTGAATATGAGCGTTATAAAACTGCCCA
TCGACAATAAGACACGCAGCCCCTCTTTGGGCAATGGCGCGTGTGTTCCT
GCGTCACCCATGTCCCGAACGGAGACCTTGTAGAATATCTTATAGGCGTG
CCTCTCTGGAGGGGTGGGATGTCCCCCCACTTTGCTGTTTTGTGGAGCCC
ACACGACGTGCGTCCCGACATGTTTTTATATACTTCGAGGTACGTTTTTT
CTTGTCTCGGCCGACTCGCAGGGAGGAGTATCCTACCCCATCAAGGCCAC
GCTGCTCAGCCTTTTCGCGTCGACCTCTCAAGCTTTTCGTCGTCAGCCTG
GGGTACCGTTAGTCGGCCTTTCGGCGCCTAGGGTGAGGTGGCAGGACGAT
CTGGGCTTCATTTTGGAGGTTATTAGCGTTCTGCAGAAGGGGTGCCGGGC
ACGGCTCGCGATTGCGGACAAGGTCGAGGAGGTGAGCTGTAGCTGTCAAG
CGACCTTATTTTGTTGTCCGGCGAGGAAAATGAGTGTTTTGTCCCCCTCA
GCGTCGCATGAGAAGTGGCAGGACGGAAACGGCAGAACCGCGGCAGCGAG
ACATGTGCCAGACTGATGATAGAGGTCACGTGACGGTGGTGCACGCTCAG
ATTGAGAACAACGACAGGACCCTCCGACTCTTGTCATTGATACGTCTTGA
CTGATGGAAAAAATGTACATGCTTCATCTGGGATCATTTGGTCTCATTTT
TGGCATCGCGTGTCCGGCAAGCGCGGGCAATGGGCCTACTCTCCCTTTCT
CTCTCTCTCTTTTTTTGCCTTCTCGGGTTCGCTAAATACACTGTGCTTGG
AGAACTTTTTTCGCCGGGGCTTCTTGCGTGTTTGTTTTTGTCCGTTCGTT
GCTTTCTAGACAAAAAATCAGAGACCACGGGACGTTTATGTTTATGTGTG
TGAAGACGGCGACAACTATCTCCCTCCCTCTCTTTCTCTTTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGTGTGTGTTGT
TTTTTCGATTCATCTCTATTTATCTTTCCATCTCTCTGGCCTCGATCAAT
GTTGTTGTTTTCGTCTAGCATCTGGTGAGCCACGTGTAGGCGACGTAATG
CTCTACAATGCAATTGCATATGCATACGCGGGTTATTTGCTCACTCCCCC
CGCCACACTCCCACCCACTTTCCTTCCCCCCACCCTGGGGACCAGGTGTT
TTTCCGGCTTGGTTTGTTGTTGTGCGACGCGGATTCACCAGAACGCCACC
TACTTTTGGGCATGAAGCGGGTGACCAACAAAACGCTGATGCCATGTCAC
GTGTGCCCCATCGGCCAAGAGGACCTAGCCAATGGAGACTACGACATCGT
GCGCAACCGCCGCACCGATGATCAGACCGAGTACGCCCTGAAGGTGATCA
GCACGGCCACCACCGGGACACAACGGCAGGTGCTTTCGTCTAAACACGGT
GTGACCCCGCAAGAGGTAGAGAACCCTTTCCGAAAGCACGTGCACATGAA
CATGGTGCGGACGTTTGGGATAGACGTGTTTCACCAGGACGCCCAGAATT
CCCTTCGGAAAATCTTCAAGCGCCTCCTGGGCGGTCTCTCGAAAGCGAAG
GGCGTGCCCCTCCTCTCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20003:730..3197+

>mRNA_Ecto-sp13_S_contig20003.6525.1 ID=mRNA_Ecto-sp13_S_contig20003.6525.1|Name=mRNA_Ecto-sp13_S_contig20003.6525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=867bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20003:730..3197+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCGTGGATCTGGACACCTCGAAGTTGGTAGGGAGGTGTGAGGTCGT
CGTTTCCCACGACGTACACACGGGCGAGGACGGGAGTGCGTTGCCAAGTT
TCGGGGGGGTTGGTTTTGTCAAGAGGCTTCGGAGTGGGCGGCACACACCC
CTGCCTTGGAACAATGACAAGGAGCGCAGAGTGTTCTTGACGCCGGCCCA
CCTGTTCACGGACGCCTTCGACTTTCGCAACCAGGGAGGAGTATCCTACC
CCATCAAGGCCACGCTGCTCAGCCTTTTCGCGTCGACCTCTCAAGCTTTT
CGTCGTCAGCCTGGGGTACCGTTAGTCGGCCTTTCGGCGCCTAGGGTGAG
GTGGCAGGACGATCTGGGCTTCATTTTGGAGGTTATTAGCGTTCTGCAGA
AGGGGTGCCGGGCACGGCTCGCGATTGCGGACAAGGTCGAGGAGGTGTTT
TTCCGGCTTGGTTTGTTGTTGTGCGACGCGGATTCACCAGAACGCCACCT
ACTTTTGGGCATGAAGCGGGTGACCAACAAAACGCTGATGCCATGTCACG
TGTGCCCCATCGGCCAAGAGGACCTAGCCAATGGAGACTACGACATCGTG
CGCAACCGCCGCACCGATGATCAGACCGAGTACGCCCTGAAGGTGATCAG
CACGGCCACCACCGGGACACAACGGCAGGTGCTTTCGTCTAAACACGGTG
TGACCCCGCAAGAGGTAGAGAACCCTTTCCGAAAGCACGTGCACATGAAC
ATGGTGCGGACGTTTGGGATAGACGTGTTTCACCAGGACGCCCAGAATTC
CCTTCGGAAAATCTTCAAGCGCCTCCTGGGCGGTCTCTCGAAAGCGAAGG
GCGTGCCCCTCCTCTCG
back to top