mRNA_Ecto-sp13_S_contig1999.6498.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: D8LEW1_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW1_ECTSI) HSP 1 Score: 504 bits (1298), Expect = 1.690e-175 Identity = 258/271 (95.20%), Postives = 260/271 (95.94%), Query Frame = 1
Query: 1 MRSGAIAVLALVRAVLLVPSVTAYIPTSTSTSKSAWVAPPHRCSTRCRARSSSTIGDSTASDPVGGAGIEPADAAKPSLKVIRGRAGPADATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
MRSG IAVLA VRAVLLVP+VTAYIPTSTSTSKSAW+APPHRCSTRCRARSSSTIG STA DPVGGAGIEPADAAKP LKVIRGRAGP DATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCK VPTEEFFAKDMGLALEMTPNYEDFSCQ
Sbjct: 1 MRSGVIAVLAFVRAVLLVPNVTAYIPTSTSTSKSAWIAPPHRCSTRCRARSSSTIGGSTALDPVGGAGIEPADAAKPPLKVIRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCK-----VPTEEFFAKDMGLALEMTPNYEDFSCQ 266
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A6H5K8Y9_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE) HSP 1 Score: 392 bits (1007), Expect = 2.010e-126 Identity = 215/271 (79.34%), Postives = 218/271 (80.44%), Query Frame = 1
Query: 1 MRSGAIAVLALVRAVLLVPSVTAYIPTSTSTSKSAWVAPPHRCSTRCRARSSSTIGDSTASDPVGGAGIEPADAAKPSLKVIRGRAGPADATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
M+SGAIA LA AVLLVP VTAYI TSTSTS SA VAPPHRCSTRCRARSSSTIG STASD VGGAGIEPADAAKP LKVIRGRAGP ATPTYDDTRPLDRILLGLFRSKLAEEVG DGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFP+WLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLND+E VPTEEFFAKDMGLALEMTPNYEDFSCQ
Sbjct: 1 MKSGAIAPLAFFCAVLLVPKVTAYILTSTSTSISALVAPPHRCSTRCRARSSSTIGGSTASDSVGGAGIEPADAAKPPLKVIRGRAGPTAATPTYDDTRPLDRILLGLFRSKLAEEVGEDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPAWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDVE---------------------------------------VPTEEFFAKDMGLALEMTPNYEDFSCQ 232
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A835ZDY9_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY9_9STRA) HSP 1 Score: 241 bits (614), Expect = 8.910e-74 Identity = 115/170 (67.65%), Postives = 141/170 (82.94%), Query Frame = 1
Query: 310 ILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEK--FPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
+LLGLFR KLA E+ DG +PGY GL++MI+ LN+ +P+ TQ+A+R+VL+SLFP WLP +FAVMFSKPFP FS R+NAWVTLVASQWLMGPSK+ND+EID G +GVGHGLLV+RCR+LE AGCASVC+NTCK +PT+EFF KDMGL L+MTP+Y+DFSCQ
Sbjct: 1 MLLGLFRKKLAAELQYDGS--DPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCK-----IPTQEFFMKDMGLPLQMTPDYDDFSCQ 163
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A8J4BT63_9CHLO (D27-like_C domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BT63_9CHLO) HSP 1 Score: 231 bits (588), Expect = 4.280e-69 Identity = 108/188 (57.45%), Postives = 140/188 (74.47%), Query Frame = 1
Query: 256 AGPADATPTYDD--TRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
AGP D P+Y D ++P++ +++ LFR K+ +G D + + GYD ++D+ + LN KF + +TQEA+R +L +LFPSWLP +F VMFSKPFP FS RLNA T + QWLMGP K+ND+EID G VG GHG+LVERCR+LE AGCASVC+N+CK +PT+ FF+KDMGL L MTPNYEDFSCQ
Sbjct: 42 AGPTDPAPSYRDIDSQPVNVVVMALFRRKMVAALGSDSELY--GYDAIIDLTRRLNSKFRTGAETQEATRAILNALFPSWLPGAFKVMFSKPFPEFSCRLNALATALTCQWLMGPCKVNDVEIDGGIVGKGHGVLVERCRYLEQAGCASVCINSCK-----IPTQTFFSKDMGLQLTMTPNYEDFSCQ 222
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: I0YX40_COCSC (D27-like_C domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX40_COCSC) HSP 1 Score: 228 bits (582), Expect = 1.170e-68 Identity = 105/189 (55.56%), Postives = 140/189 (74.07%), Query Frame = 1
Query: 253 RAGPADATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
+AGP P+Y+ D++PL+R ++ LFR K+ +G + D + GYD ++D+ ++LN K + R TQ +R++L SLFPSWLP +F VMFSKP P S +LNAWVT++ QWLMGP K+ND+E+D G +G G G+LVERCR+LE GCASVC+N+CK +PT+EFFAKDMGL L MTPNYEDFSCQ
Sbjct: 7 KAGPETPAPSYESIDSQPLNRAIMSLFRQKMVAAIGKNSD--KEGYDAIVDLTRLLNSKSSNPRDTQVKTRQILLSLFPSWLPPAFKVMFSKPMPEVSCQLNAWVTMLTCQWLMGPCKVNDVELDGGRIGSGQGVLVERCRYLEETGCASVCLNSCK-----IPTQEFFAKDMGLPLTMTPNYEDFSCQ 188
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A8IC34_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IC34_CHLRE) HSP 1 Score: 230 bits (586), Expect = 1.280e-68 Identity = 110/189 (58.20%), Postives = 138/189 (73.02%), Query Frame = 1
Query: 253 RAGPADATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
+AGP DA P Y D++PL+ I++ LFR K+ E +G D GYD ++D+ + LN KF + +TQEA+R +L +LFPSWLP +F VMFS+P P FS RLNA T + QWLMGP K+ND+EID G VG GHG+LVERCR+LE AGCASVC+N+CK VPT+ FF KDMGL L MTPNY+DFSCQ
Sbjct: 50 QAGPVDAAPDYKPIDSQPLNIIVMALFRRKMVEALGSDSKL--SGYDAIIDLTRKLNTKFRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNALATAMTCQWLMGPCKVNDVEIDGGKVGTGHGVLVERCRYLEQAGCASVCINSCK-----VPTQSFFEKDMGLPLTMTPNYDDFSCQ 231
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A7J7QQS2_9CHLO (D27-like_C domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQS2_9CHLO) HSP 1 Score: 224 bits (572), Expect = 4.100e-67 Identity = 104/189 (55.03%), Postives = 138/189 (73.02%), Query Frame = 1
Query: 253 RAGPADATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
+AGP + P Y D++PL+++++ LFR K+ +G D GY+ ++D+ + LN + R+ Q +R++LKSLFPSWLP +FAVMFSKP P FS +LNA T + QWLMGP K+ND+E+DDG+VG G G+LVERCR+LE AGCAS+C+N+CK VPT+EFF KDMGL L MTPNYEDFSCQ
Sbjct: 1 QAGPVEPVPDYTAIDSQPLNQVVMALFRRKMVAAIGSDSQL--SGYEAIIDLTRRLNASYSEARQVQLTTRKILKSLFPSWLPGAFAVMFSKPLPEFSCKLNALATALTCQWLMGPCKVNDVELDDGSVGQGMGVLVERCRYLEQAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYEDFSCQ 182
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A0D2MYG1_9CHLO (D27-like_C domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MYG1_9CHLO) HSP 1 Score: 225 bits (574), Expect = 1.160e-66 Identity = 107/189 (56.61%), Postives = 136/189 (71.96%), Query Frame = 1
Query: 253 RAGPADATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
+AGP P+Y D +PL+R+++ LFR K+ E +G D GY ++D+ + LN ++ + R TQ A+RR+L SLFPSWLP +F VMFS P PAFS RLNA T + QWLMGP K+ND+E+D G VG G G+LVERCR+LE AGCAS+C+N+CK VPT+EFF KDMGL L MTPNYEDFSCQ
Sbjct: 64 QAGPGTPAPSYAEIDAQPLNRVVMALFRRKMVESIGSDSQL--QGYPAIIDLTRRLNRQYQTARDTQLATRRILNSLFPSWLPGAFKVMFSAPLPAFSCRLNALATALTCQWLMGPCKVNDVELDSGEVGSGMGVLVERCRYLEEAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYEDFSCQ 245
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A2V0P122_9CHLO (D27-like_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P122_9CHLO) HSP 1 Score: 226 bits (576), Expect = 1.490e-66 Identity = 112/204 (54.90%), Postives = 144/204 (70.59%), Query Frame = 1
Query: 208 EPADAAKPSLKVIRGRAGPADATPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
E AD A P+ +R +AGPA A P Y D +PL+R+++ LFR K+AE +G D GY ++D+ + LN ++P+ R TQ +R +L SLFP WLP +F MFS+P PA S RLNA+ T + QWLMGP K+ND+EID G VG G G+LVERCR+LE AGCAS+C+N+CK VPT+EFF KDMGL L MTPNY+DFSCQ
Sbjct: 9 EAADGAAPAA--LR-QAGPAAAAPDYAGVDAQPLNRVVMALFRRKMAEAIGSDSQL--QGYPAIIDLTRRLNRQYPTARDTQLTTRAILNSLFPGWLPGAFRAMFSRPLPALSCRLNAFATALTCQWLMGPCKVNDVEIDGGQVGAGMGVLVERCRYLEEAGCASICINSCK-----VPTQEFFEKDMGLPLTMTPNYDDFSCQ 202
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Match: A0A2J8AIV6_9CHLO (D27-like_C domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV6_9CHLO) HSP 1 Score: 222 bits (566), Expect = 2.860e-64 Identity = 105/182 (57.69%), Postives = 135/182 (74.18%), Query Frame = 1
Query: 274 TPTYD--DTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKARRRIVPTEEFFAKDMGLALEMTPNYEDFSCQ 813
TP+Y D +PL++I++ LFR K+ VG D GYD ++D+ + LN KF + +TQEA+R +L +LFPSWLP +F VMF++P P S R+NA T + QWLMGP K+ND+E DDGTVG GHG+LVERCR+LE AGCA+VC+N+CK VPT+ FFAKDMGLAL MTPNY+DFSCQ
Sbjct: 171 TPSYAAIDVQPLNKIVMALFRRKMVAAVGSDSPL--SGYDAIIDLTRRLNNKFRTAAETQEATRSILIALFPSWLPGAFKVMFARPLPELSCRMNALATALTCQWLMGPCKVNDVETDDGTVGEGHGVLVERCRYLEQAGCAAVCINSCK-----VPTQSFFAKDMGLALTMTPNYDDFSCQ 345 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1999.6498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1999.6498.1 >prot_Ecto-sp13_S_contig1999.6498.1 ID=prot_Ecto-sp13_S_contig1999.6498.1|Name=mRNA_Ecto-sp13_S_contig1999.6498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp MRSGAIAVLALVRAVLLVPSVTAYIPTSTSTSKSAWVAPPHRCSTRCRARback to top mRNA from alignment at Ecto-sp13_S_contig1999:7030..11189+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1999.6498.1 ID=mRNA_Ecto-sp13_S_contig1999.6498.1|Name=mRNA_Ecto-sp13_S_contig1999.6498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4160bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1999:7030..11189+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1999:7030..11189+ >mRNA_Ecto-sp13_S_contig1999.6498.1 ID=mRNA_Ecto-sp13_S_contig1999.6498.1|Name=mRNA_Ecto-sp13_S_contig1999.6498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1999:7030..11189+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |