mRNA_Ecto-sp13_S_contig19861.6448.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19861.6448.1
Unique NamemRNA_Ecto-sp13_S_contig19861.6448.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19861.6448.1 vs. uniprot
Match: A0A6H5KZQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ9_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.060e-33
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 3 
Query:  441 QQAGSASPVGRSFVGTPADGEDGGADAARRSSRAVGPVAGGQGPPSPAAGVSTVRQPPTIASFAAQQAVEAATAARKAAAADVAL 695
            QQAGSASPVGRSFVGTPAD EDGGADAARRSSR VGPVAGGQGPPSPAAGVSTVRQPPTIASFAAQQAVEAATAARKAAAADVAL
Sbjct:  332 QQAGSASPVGRSFVGTPADREDGGADAARRSSRVVGPVAGGQGPPSPAAGVSTVRQPPTIASFAAQQAVEAATAARKAAAADVAL 416
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BLAST of mRNA_Ecto-sp13_S_contig19861.6448.1 vs. uniprot
Match: D7G6K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K0_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.000e-25
Identity = 105/241 (43.57%), Postives = 114/241 (47.30%), Query Frame = 1 
Query:    1 SGSDSEEGALVGAHAATASPASVAPPEAXXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXAASGLLLAGQVAAADSPRASQGAAALIDQGPGYLDAPVSRRQAFSDSVGSDCSQSCCVAVMTPCPLAADVTAAEAHLR-------------RRRSVSGERVSKRGLPLRWGGRLSVRPLMVRMAARTRPVVRRGPWGRSPEGRVPLRLR-LVCPQFASRPPLRASRPSKRWRPRRRPARRLP 681
            SGSDSEEGALVGA AA ASP S AP  A   XXXXX               I       AASGL LA QVA A SPRASQGAA L  QG GYLDAP     A   S GS CS+SCCV    PCP    +  +   LR             RRRS S    ++  LPLR G RL+  P +               W   P    P RLR              AS PSKRW+PR+R  RRLP
Sbjct:   28 SGSDSEEGALVGAPAAAASPVSEAPSAAADNXXXXXGASCEDADFDDLANAIVAASAEAAASGLELADQVAEAASPRASQGAAVLEHQGSGYLDAPSG---AGRKSTGSGCSRSCCVTAAAPCPPWGLMPVSPVRLRPLPTWLRLKPVFGRRRSASDRHSARLSLPLRLGRRLTACPRLA--------------WSVPPRLVGPRRLRRXXXXXXXXXXXXXASPPSKRWKPRKRHGRRLP 251
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BLAST of mRNA_Ecto-sp13_S_contig19861.6448.1 vs. uniprot
Match: D7G3H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H7_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 9.080e-6
Identity = 51/89 (57.30%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 SGSDSEEGALVGAHAATASPASVAPPEAXXXXXXXXXXXXXXXXXXXXXXXIXXXXXXXAASGLLLAGQVAAADSPRASQGAAALIDQG 267
            SGSDSEEGALVGA AA AS  S AP  A        XXXXXX         I       AASGL+LAGQVA A SPR SQGAAAL   G
Sbjct:   28 SGSDSEEGALVGAPAAAASLVSEAPSAAVDNSSEAAXXXXXXADGGDLANAIVATSAEAAASGLVLAGQVAEAASPRVSQGAAALTHPG 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19861.6448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZQ9_9PHAE1.060e-3397.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6K0_ECTSI1.000e-2543.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3H7_ECTSI9.080e-657.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19861contigEcto-sp13_S_contig19861:2021..3093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size696
Hectar predicted targeting categoryother localisation
Exons3
Cds size696
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463001.7811098-CDS-Ecto-sp13_S_contig19861:2020..23421681463001.7811098-CDS-Ecto-sp13_S_contig19861:2020..2342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19861 2021..2342 -
1681463001.7915938-CDS-Ecto-sp13_S_contig19861:2676..27301681463001.7915938-CDS-Ecto-sp13_S_contig19861:2676..2730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19861 2677..2730 -
1681463001.8003478-CDS-Ecto-sp13_S_contig19861:2773..30931681463001.8003478-CDS-Ecto-sp13_S_contig19861:2773..3093Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19861 2774..3093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19861.6448.1prot_Ecto-sp13_S_contig19861.6448.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19861 2021..3093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19861.6448.1

>prot_Ecto-sp13_S_contig19861.6448.1 ID=prot_Ecto-sp13_S_contig19861.6448.1|Name=mRNA_Ecto-sp13_S_contig19861.6448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=232bp
SGSDSEEGALVGAHAATASPASVAPPEAAGDSSEADGGSGGDADGGDLAN
AIVAASANAAASGLLLAGQVAAADSPRASQGAAALIDQGPGYLDAPVSRR
QAFSDSVGSDCSQSCCVAVMTPCPLAADVTAAEAHLRRRRSVSGERVSKR
GLPLRWGGRLSVRPLMVRMAARTRPVVRRGPWGRSPEGRVPLRLRLVCPQ
FASRPPLRASRPSKRWRPRRRPARRLPPTWP*
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mRNA from alignment at Ecto-sp13_S_contig19861:2021..3093-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19861.6448.1 ID=mRNA_Ecto-sp13_S_contig19861.6448.1|Name=mRNA_Ecto-sp13_S_contig19861.6448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19861:2021..3093- (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGTTCTGACTCGGAAGAGGGTGCCCTGGTCGGCGCTCATGCGGCGAC
GGCGTCGCCGGCCTCGGTGGCCCCGCCGGAGGCTGCGGGGGATTCCTCGG
AGGCGGACGGCGGCTCCGGTGGAGATGCGGATGGCGGCGATCTCGCCAAC
GCCATCGTAGCGGCGTCCGCGAATGCAGCGGCCAGCGGGTTGCTGCTGGC
CGGCCAGGTGGCGGCGGCGGATAGCCCTCGTGCCTCGCAGGGTGCTGCGG
CGCTGATAGACCAGGGGCCTGGTTACCTCGATGCCCCGGTGAGTCGGCGA
CAAGCCTTTTCGGATTCCGTGTCCTTGGTGTCCGGGTTGGTCGAGAACTG
GTCGGTAGAGGAGCGGGAGCGATTGCTCGCAGAGCTGCTGCGTGGCCGTC
ATGACCCCTTGTCCCCTGTCGTGAGTGACCCGGATTTGCCGGCCACTCTT
CGCCTCGTGCAGACTTTGAGCGAGTCCGATGAGGCCGCCGACCCGCGCCT
TTCTGATTCGCTTCCCTCGCCCGCAACTTGCAAGCGGCGGATGATGCGCT
GGAGGCGCATTCCAAGGCGGTCTTACGCCGCGAGCGCAAAAGCGCGTCGG
GCGGGTCGTTCCACAGCCCCGCGAAACGCGCTCTCGCTCGCAAACCTTCG
CGCCCTCCCGCGCCCGTGTTCACCACAAATCGCTATTCCCCGTTATCGGT
TGCCGCGTCATCGCAGGGTTCCGATGCCGGTACTTCGGGTGCCGCCGAGA
GCGCCGCCGATGTAACCGCCGCCGAGGCTCATCTGCGGCGGCGCAGGAGC
GTCTCCGGCGAGCGCGTCAGCAAGCGGGGTCTGCCTCTCCGGTGGGGCGG
TCGTTTGTCGGTACGCCCGCTGATGGTGAGGATGGCGGCGCGGACGCGGC
CCGTCGTTCGTCGCGGGCCGTGGGGCCGGTCGCCGGAGGGCAGGGTCCCC
CTTCGCCTGCGGCTGGTGTGTCCACAGTTCGCCAGCCGCCCACCATTGCG
AGCTTCGCGGCCCAGCAAGCGGTGGAGGCCGCGACGGCGGCCCGCAAGGC
GGCTGCCGCCGACGTGGCCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19861:2021..3093-

>mRNA_Ecto-sp13_S_contig19861.6448.1 ID=mRNA_Ecto-sp13_S_contig19861.6448.1|Name=mRNA_Ecto-sp13_S_contig19861.6448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19861:2021..3093- (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGTTCTGACTCGGAAGAGGGTGCCCTGGTCGGCGCTCATGCGGCGAC
GGCGTCGCCGGCCTCGGTGGCCCCGCCGGAGGCTGCGGGGGATTCCTCGG
AGGCGGACGGCGGCTCCGGTGGAGATGCGGATGGCGGCGATCTCGCCAAC
GCCATCGTAGCGGCGTCCGCGAATGCAGCGGCCAGCGGGTTGCTGCTGGC
CGGCCAGGTGGCGGCGGCGGATAGCCCTCGTGCCTCGCAGGGTGCTGCGG
CGCTGATAGACCAGGGGCCTGGTTACCTCGATGCCCCGGTGAGTCGGCGA
CAAGCCTTTTCGGATTCCGTCGGGAGCGATTGCTCGCAGAGCTGCTGCGT
GGCCGTCATGACCCCTTGTCCCCTCGCCGCCGATGTAACCGCCGCCGAGG
CTCATCTGCGGCGGCGCAGGAGCGTCTCCGGCGAGCGCGTCAGCAAGCGG
GGTCTGCCTCTCCGGTGGGGCGGTCGTTTGTCGGTACGCCCGCTGATGGT
GAGGATGGCGGCGCGGACGCGGCCCGTCGTTCGTCGCGGGCCGTGGGGCC
GGTCGCCGGAGGGCAGGGTCCCCCTTCGCCTGCGGCTGGTGTGTCCACAG
TTCGCCAGCCGCCCACCATTGCGAGCTTCGCGGCCCAGCAAGCGGTGGAG
GCCGCGACGGCGGCCCGCAAGGCGGCTGCCGCCGACGTGGCCCTGA
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