mRNA_Ecto-sp13_S_contig19854.6442.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19854.6442.1
Unique NamemRNA_Ecto-sp13_S_contig19854.6442.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19854.6442.1 vs. uniprot
Match: A0A6H5L664_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L664_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 9.320e-92
Identity = 250/452 (55.31%), Postives = 258/452 (57.08%), Query Frame = 1 
Query:    1 SSREATRRLLGGDGGGKLVYDYVSMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHSQILKILLAAGANPNVADNHAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVYNRIGVTRLLLDASASSLEVHDLCLGITPLAWASKLSFTTMLRVLLNAGADVNSRSPAGSXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNHGADAGS---------------------------------------LALSRARKDRTWRRRGWLVVVLARRQAMAMA-----------------------------------------------------------------------------------------------------------------LGSTGGDSTR-VGSGTGWTPERGAVEILLWLAAMEVGVFRNVMRYV 897
            SSREATRRLLGGD GGKLVYDYV+MVSQDVATV GL QGGAFLDWQD+HRRR+PLHRAVYFGH QILKILLAAGANPNVADNHAVT                XXXXXXXXXXXXXXXXXXXXX     RIGVTRLLLDASASSLEV D   GITPLAWASKLSFTTMLR+LL+ GADVNSRSP   XXXXXXXXXXXXXXXXXXXXXXXXXDSLDN GADAGS                                       LALS+ARKDRTWRRRGWLVV LARRQAM MA                                                                                                                 LGSTGGD T  VGSGTGW PERGA+E LLWLAAME GVFRNVMR+V
Sbjct:  211 SSREATRRLLGGDRGGKLVYDYVNMVSQDVATVCGLAQGGAFLDWQDNHRRRSPLHRAVYFGHFQILKILLAAGANPNVADNHAVTPLHMVAVKGCEAEAAEXXXXXXXXXXXXXXXXXXXXXXXXXXRIGVTRLLLDASASSLEVRDSFHGITPLAWASKLSFTTMLRILLSMGADVNSRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNEGADAGSVTGLGDPPGHTGPQSPPILPGAANQTGRPKNGALATRIQLALSKARKDRTWRRRGWLVV-LARRQAMTMAVVPGTTSRASKTYVRGNQGHPRMTIPRIPVMTGVDGKMVVEDLTGADQKRTRVANETFSADGGGAETCRKENPDLHCKQTSIVRGEGASSFHRFFDGTGTNFTSLLSAPSSAQLGSTGGDITGYVGSGTGWAPERGAIETLLWLAAMEEGVFRNVMRFV 661
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BLAST of mRNA_Ecto-sp13_S_contig19854.6442.1 vs. uniprot
Match: D7G7M3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M3_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 2.710e-87
Identity = 234/294 (79.59%), Postives = 238/294 (80.95%), Query Frame = 1 
Query:    1 SSREATRRLLGGDGGGKLVYDYVSMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHSQILKILLAAGANPNVADNHAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVYNRIGVTRLLLDASASSLEVHDLCLGITPLAWASKLSFTTMLRVLLNAGADVNSRSPAGSXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNHGADAGS---------------------------------------LALSRARKDRTWRRRGWLVVVLARRQAMAMAL 765
            SSREATRRLLGGD GGKLVYDYV+MVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGH QILKILLAAGANPNVADN AVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   YNRIGVTRLLLDASASSLEV D   GITPLAWASKLSFT MLRVLL+ GADVNSRSPA  XXXXXXXXXXXXXXXXXXXXXXXXXDS DN GADAGS                                       LALS+ARKDRTWRRRGWLVV LARRQAMAMA+
Sbjct:  213 SSREATRRLLGGDRGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNLAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRIGVTRLLLDASASSLEVRDSYHGITPLAWASKLSFTLMLRVLLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXDSADNEGADAGSAIGLGDPPRHAGPQSPPILLGAVNEIGRLNNEELATRIRLALSKARKDRTWRRRGWLVV-LARRQAMAMAV 505
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BLAST of mRNA_Ecto-sp13_S_contig19854.6442.1 vs. uniprot
Match: A0A6H5L5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T2_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 1.630e-86
Identity = 222/444 (50.00%), Postives = 235/444 (52.93%), Query Frame = 1 
Query:    1 SSREATRRLLGGDGGGKLVYDYVSMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHSQILKILLAAGANPNVADNHAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVYNRIGVTRLLLDASASSLEVHDLCLGITPLAWASKLSFTTMLRVLLNAGADVNSRSPAGSXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNHGADAGS---------------------------------------LALSRARKDRTWRRRGWLVVVLARRQAMAMAL--GST--------------------------------------------------------------------------------------------------------GGDSTRVGSGTGWTPERGAVEILLWLAAMEVGVFRNVMRYV 897
            SSREATRRLLGGD GGKLVYDYV+MVSQDVATV GL QGGAFLDWQD+HRRR+PLHRAVYFGH QILKILLAAGANPNVADNHAVT                                     AVVYNRIGVTRLLLDASASSLEV D   GITPLAWASK SF TMLR+LL+ GADVNSRSPA  XXXXXXXXXXXXXXXXXXXXXXXXXDSLDN GADAGS                                       LALS ARKDRTWRRRGWLVV LARRQAMAMA+  G+T                                                                                                        GG +  +   TGWTP +G V+ LL LAA+EVGVFR VMRY+
Sbjct:  204 SSREATRRLLGGDRGGKLVYDYVNMVSQDVATVCGLAQGGAFLDWQDNHRRRSPLHRAVYFGHFQILKILLAAGANPNVADNHAVTPLHIYDTHARTDDSYTPLHL-----------------AVVYNRIGVTRLLLDASASSLEVRDSFHGITPLAWASKFSFATMLRILLSMGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNEGADAGSAIGLGDPPRHKGPQSPPILPGAVNRTGWLKNETLATRIQLALSNARKDRTWRRRGWLVV-LARRQAMAMAVVPGTTSRASKTSVSGNKSDSKMTIPRILATTGVDADTGRRVHLASHQEGTRQGIVRSSSDLPHSNDVPGGWSHGNLGNSVPLQSKGSHNTAIFTSQISESSSMQLGWAGGGSAGHIDKVTGWTPGQGVVQALLGLAAVEVGVFRGVMRYI 629
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BLAST of mRNA_Ecto-sp13_S_contig19854.6442.1 vs. uniprot
Match: D7G7L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L7_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.120e-42
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    1 SSREATRRLLGGDGGGKLVYDYVSMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHSQILKILLAAGANPNVADNHAVT 258
            SSREATRRLLGGD GGKLVYDYV+MVSQ+VATVYGLV+GGAFLDWQDSHRRR+PLHRAV FGHSQIL+ILL  GANPNVADN AVT
Sbjct:   75 SSREATRRLLGGDRGGKLVYDYVNMVSQNVATVYGLVKGGAFLDWQDSHRRRSPLHRAVNFGHSQILQILLTTGANPNVADNLAVT 160
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BLAST of mRNA_Ecto-sp13_S_contig19854.6442.1 vs. uniprot
Match: D7G7L8_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L8_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 8.580e-12
Identity = 56/126 (44.44%), Postives = 57/126 (45.24%), Query Frame = 1 
Query:  499 MLRVLLNAGADVNSRSPAGSXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNHGADAGS---------------------------------------LALSRARKDRTWRRRGWLVVVLARRQAMAM 759
            MLRVLLNAGADVNSRS AGS                         D LDN GADAGS                                       LALS+ARKDRTWRRRGWLVV LA RQAMAM
Sbjct:    1 MLRVLLNAGADVNSRSSAGSTPLYWACRLNTADIVECLLLAGADPDYLDNQGADAGSVTGLGDPPRHTGRQSPPILPGAVNETGRLKNEALATRIRLALSKARKDRTWRRRGWLVV-LATRQAMAM 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19854.6442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L664_9PHAE9.320e-9255.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7M3_ECTSI2.710e-8779.59Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5L5T2_9PHAE1.630e-8650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7L7_ECTSI3.120e-4288.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7L8_ECTSI8.580e-1244.44Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19854contigEcto-sp13_S_contig19854:3..1350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score281.2
Seed ortholog evalue5.7e-73
Seed eggNOG ortholog2880.D7G7M3
Preferred nameASB7
Model size900
KEGG koko:K10329
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size900
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463001.40968-CDS-Ecto-sp13_S_contig19854:2..6711681463001.40968-CDS-Ecto-sp13_S_contig19854:2..671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19854 3..671 +
1681463001.420841-CDS-Ecto-sp13_S_contig19854:788..8811681463001.420841-CDS-Ecto-sp13_S_contig19854:788..881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19854 789..881 +
1681463001.4361243-CDS-Ecto-sp13_S_contig19854:1212..13501681463001.4361243-CDS-Ecto-sp13_S_contig19854:1212..1350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19854 1213..1350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19854.6442.1prot_Ecto-sp13_S_contig19854.6442.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19854 3..1350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19854.6442.1

>prot_Ecto-sp13_S_contig19854.6442.1 ID=prot_Ecto-sp13_S_contig19854.6442.1|Name=mRNA_Ecto-sp13_S_contig19854.6442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp
SSREATRRLLGGDGGGKLVYDYVSMVSQDVATVYGLVQGGAFLDWQDSHR
RRTPLHRAVYFGHSQILKILLAAGANPNVADNHAVTPLHMVAVKGCEAEA
AELLCAGADMHARTNDSYTPLHLAVVYNRIGVTRLLLDASASSLEVHDLC
LGITPLAWASKLSFTTMLRVLLNAGADVNSRSPAGSTPLHWACRFNNADI
VESLLLAGADPDSLDNHGADAGSLALSRARKDRTWRRRGWLVVVLARRQA
MAMALGSTGGDSTRVGSGTGWTPERGAVEILLWLAAMEVGVFRNVMRYV*
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mRNA from alignment at Ecto-sp13_S_contig19854:3..1350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19854.6442.1 ID=mRNA_Ecto-sp13_S_contig19854.6442.1|Name=mRNA_Ecto-sp13_S_contig19854.6442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19854:3..1350+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTCACGGGAAGCCACCCGTCGGCTCCTAGGCGGTGACGGAGGAGGCAA
GCTGGTCTACGATTACGTCAGCATGGTCAGCCAGGACGTGGCTACCGTGT
ACGGTCTGGTCCAAGGCGGGGCGTTCCTGGATTGGCAGGATAGCCACAGG
AGACGCACTCCTTTGCACCGGGCGGTGTACTTTGGGCACTCCCAGATTCT
CAAGATCCTACTCGCTGCTGGCGCTAATCCAAACGTCGCCGACAACCATG
CCGTTACCCCGTTGCATATGGTTGCCGTGAAGGGATGCGAGGCTGAGGCT
GCCGAACTGCTCTGTGCCGGAGCCGATATGCACGCACGCACGAATGACAG
CTATACGCCGCTACATCTGGCCGTCGTCTACAACAGGATTGGTGTCACGA
GGCTACTCCTAGACGCTTCGGCATCCTCCCTCGAAGTCCACGACTTATGC
CTTGGCATTACGCCGCTTGCATGGGCGTCCAAGCTCTCCTTCACTACTAT
GCTACGCGTCCTGCTAAACGCGGGAGCCGACGTTAACTCTAGGTCCCCCG
CGGGCTCGACCCCCCTCCACTGGGCTTGCCGCTTCAACAACGCTGACATC
GTCGAGAGCTTGCTGTTAGCGGGAGCCGATCCCGACTCTTTGGATAACCA
CGGCGCCGACGCGGGCTCCGTGGCTGGCCTTGGCGACCCCCCCCGCCGCG
CGGGACACCAGAGCCCTCCCATTCCTCCAGGAGCGGTGAATCAAACCGGC
TGGCTAAAGAATAAAACGTTGGCGACCCGCATTCAGCTGGCTCTGTCGAG
AGCGAGGAAGGATCGCACTTGGCGTCGTCGGGGCTGGTTGGTCGTCGTGC
TGGCTAGGAGGCAGGCGATGGCGATGGCCGTTGTGCCCGACACTACTTCC
AGAGCTTGCGTGAGTGGTATAAGGAGCGTTTCTAGGATGACCATACCAAG
TGTTCCGGCGATGACAGACAGTGGACGGAAAGATGGTCGTTGAGGATCTC
ACTGGTGCCGGCCAGAAACGGATCCGGGTGGGCTACGAAACCTCCAGCAC
CGACGGCGAAGGAGCGGAAACCTGCCGTCAAGAAACCCCCCGCCTGAACT
TCAATCAAACACATATCTTCCGTGGGGAGGCGGCGTCTTCTTTCCACCAG
ATCTACAACGGCGCTGGCACCAATTTCACCTCACTGCTGTCCGTGCAATC
TTCGGCCCAGCTCGGTTCGACTGGTGGCGATAGCACCCGCGTCGGCAGTG
GCACTGGCTGGACGCCTGAACGGGGGGCTGTAGAGATTTTGCTCTGGCTG
GCTGCTATGGAAGTGGGTGTTTTTCGTAATGTCATGCGCTATGTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19854:3..1350+

>mRNA_Ecto-sp13_S_contig19854.6442.1 ID=mRNA_Ecto-sp13_S_contig19854.6442.1|Name=mRNA_Ecto-sp13_S_contig19854.6442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19854:3..1350+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTCACGGGAAGCCACCCGTCGGCTCCTAGGCGGTGACGGAGGAGGCAA
GCTGGTCTACGATTACGTCAGCATGGTCAGCCAGGACGTGGCTACCGTGT
ACGGTCTGGTCCAAGGCGGGGCGTTCCTGGATTGGCAGGATAGCCACAGG
AGACGCACTCCTTTGCACCGGGCGGTGTACTTTGGGCACTCCCAGATTCT
CAAGATCCTACTCGCTGCTGGCGCTAATCCAAACGTCGCCGACAACCATG
CCGTTACCCCGTTGCATATGGTTGCCGTGAAGGGATGCGAGGCTGAGGCT
GCCGAACTGCTCTGTGCCGGAGCCGATATGCACGCACGCACGAATGACAG
CTATACGCCGCTACATCTGGCCGTCGTCTACAACAGGATTGGTGTCACGA
GGCTACTCCTAGACGCTTCGGCATCCTCCCTCGAAGTCCACGACTTATGC
CTTGGCATTACGCCGCTTGCATGGGCGTCCAAGCTCTCCTTCACTACTAT
GCTACGCGTCCTGCTAAACGCGGGAGCCGACGTTAACTCTAGGTCCCCCG
CGGGCTCGACCCCCCTCCACTGGGCTTGCCGCTTCAACAACGCTGACATC
GTCGAGAGCTTGCTGTTAGCGGGAGCCGATCCCGACTCTTTGGATAACCA
CGGCGCCGACGCGGGCTCCCTGGCTCTGTCGAGAGCGAGGAAGGATCGCA
CTTGGCGTCGTCGGGGCTGGTTGGTCGTCGTGCTGGCTAGGAGGCAGGCG
ATGGCGATGGCCCTCGGTTCGACTGGTGGCGATAGCACCCGCGTCGGCAG
TGGCACTGGCTGGACGCCTGAACGGGGGGCTGTAGAGATTTTGCTCTGGC
TGGCTGCTATGGAAGTGGGTGTTTTTCGTAATGTCATGCGCTATGTTTAA
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