mRNA_Ecto-sp13_S_contig19784.6403.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19784.6403.1
Unique NamemRNA_Ecto-sp13_S_contig19784.6403.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19784.6403.1 vs. uniprot
Match: D7FXP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP0_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 6.130e-47
Identity = 73/79 (92.41%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:    1 MVVIVETGDGGWDTQEEPRDMLVGRVFGGLPNGRLGRHSVKAARSPVDPGTEPSTPCSSFSDLGNINTWETHRTPQTEG 237
            MVVIVETGDGGWDTQEEPRDMLVGRVFGGLPNGRLGRHSVKAARSPVDPGTEPSTPCSSF DLGN N WET R PQ EG
Sbjct:    1 MVVIVETGDGGWDTQEEPRDMLVGRVFGGLPNGRLGRHSVKAARSPVDPGTEPSTPCSSFPDLGNTNKWETPRVPQREG 79
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BLAST of mRNA_Ecto-sp13_S_contig19784.6403.1 vs. uniprot
Match: A0A6H5KH43_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH43_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.750e-24
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:   64 LVGRVFGGLPNGRLGRHSVKAARSPVDPGTEPSTPCSSFSDLGNINTWETHR 219
            LVGRVFGGLPNGRLGRHSVKAARSPVDPGTEP+TPCSSF DLGN+NTWET R
Sbjct:   12 LVGRVFGGLPNGRLGRHSVKAARSPVDPGTEPATPCSSFQDLGNMNTWETPR 63
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BLAST of mRNA_Ecto-sp13_S_contig19784.6403.1 vs. uniprot
Match: D7G3B3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B3_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.550e-17
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 MVVIVETGDGGWDTQE--EPRDMLVGRVFGGLPNGRLGRHSVKAARSP------VDPGTEPSTPCSSFSDLGNINTWETHRTPQTEG 237
            MV++ ++GD  WDT+   +PRDML GRVFGGLPNGRLGR S+KA  S       VDP TEPSTP SS +DL + NT+     P++EG
Sbjct:    1 MVIVEDSGD--WDTERKTDPRDMLFGRVFGGLPNGRLGRRSIKAGGSAGNSVLRVDPVTEPSTPSSSSADLTSFNTF-----PRSEG 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19784.6403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXP0_ECTSI6.130e-4792.41Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KH43_9PHAE1.750e-2492.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G3B3_ECTSI1.550e-1755.17Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19784contigEcto-sp13_S_contig19784:1352..3002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size237
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.6566436-CDS-Ecto-sp13_S_contig19784:1351..15261681462998.6566436-CDS-Ecto-sp13_S_contig19784:1351..1526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19784 1352..1526 -
1681462998.6732879-CDS-Ecto-sp13_S_contig19784:2940..30021681462998.6732879-CDS-Ecto-sp13_S_contig19784:2940..3002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19784 2941..3002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19784.6403.1prot_Ecto-sp13_S_contig19784.6403.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19784 1352..3002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19784.6403.1

>prot_Ecto-sp13_S_contig19784.6403.1 ID=prot_Ecto-sp13_S_contig19784.6403.1|Name=mRNA_Ecto-sp13_S_contig19784.6403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MVVIVETGDGGWDTQEEPRDMLVGRVFGGLPNGRLGRHSVKAARSPVDPG
TEPSTPCSSFSDLGNINTWETHRTPQTEG
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mRNA from alignment at Ecto-sp13_S_contig19784:1352..3002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19784.6403.1 ID=mRNA_Ecto-sp13_S_contig19784.6403.1|Name=mRNA_Ecto-sp13_S_contig19784.6403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19784:1352..3002- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGTCATCGTCGAAACTGGTGACGGAGGGTGGGATACCCAGGAGGA
GCCGAGGGACATGTGAGTGTTGAGATTCTCTCTTGTTGTAGGCTTCGCTT
TTAGTTTTGGTAGAGCGAAAGAAATATTGATCAGGCGCTAGGATGCTCCT
GCTGGTTCACTTCGCTTTCGGCGATGTTCTCCCCCCTGTGTAGGTAGTGT
CTAACTGCTGTTCGTGCATCCACGCCTGCCTGCCTCTCCTTCAGATAGAT
GTGAGATCAGATGCCCAATAGGACACGATGTCCGTGTGACCCATCTTCAT
GCCAAATACCGGGCGCAACAAGAAAGCTTCTTCTACCTGACAAGATGCTC
TCGGCAATCCAAGTAGAGCAGACCTTGGCGTAGGGCTGTGTACTATACAC
ACAAACAATTGACCCTACTCTCTAGATGTAACCGCGGGGTGGTGGGAATA
TGTACCATTTGGCGTGATCCGTTTAGCCCTGGGCTTTGCATCTCGTGAAG
AGAGAGATGTGAGATATTTGTATGTGCCGGAAGATGTTCATGGGTCGATT
ATTTAGTGTATCATATGTTGCACACAATTCCGACGGGAGGGTCTGTGATG
TTGTATTATACAACACGTGACAGGCTGTAGGAATACATGAGTCTCCTGGA
TCCGCTACATGCCACCAAATAAATGTGGATGGATGTACTCCAATACAACA
AACAAGTGCCCTAGCTCGCACTCTCTTGGTAAACACGCCTAAAACACAAC
AATACCTACCCGCGGGCGCACGCCAAAAGCAGACAAGCCCCGGGCCAGCA
CCAACTCGGGCAAAGGCGTGCAGTTCATGTTGCTTCTCGCGCCCCGGGGT
AAAAGCTTCGCTATTTTTCCACATTCTTGGGCTAAATAAAACCTAGAGGC
GTGGACTACCGGGAGGGGCAAACATGCCGTTCGTAGACAGGCCACACATA
CAGAGGTCGCATTGGAAACAGGGTTGATGGCGGGTCAACTGGTTCATATC
GTAGTGGTGTTGGAAACTTTGCTGTGAAGCTTCAGTGGCACCGGCCGTTC
TGTAGCAATCGAGGAGTACGGTGGTGTTTCTTCAAGATGAGAAGCACCAC
TTGCCTTGGATGGATATTTCGATTGCTGACAAAACAGGTTTCCCTGCCCA
TCCCCCCGCTTTGATCGAACCCCGTCTTAGCCAGCCGTTGGGGAGGCTTT
CAAACGCACCGAAGTTGCGACCGTCCCCCGCCCCCCGCCAACCTAACACA
GGCTTGTGGGTCGTGTGTTCGGAGGCCTACCCAACGGCCGACCAGGCCGG
CGCTCAATTTTAGCGGGGGTATTGTTGGGAAATGTGTTCTATGCTAAGTA
AGGGTTTCGTAACAATGGAAGAATGCGATGATGTTTCTTCCACGTGGGAA
GCACCGCTTGCCTTGGATGGATATCTTGATTGCTGACACCGATGTTGCAA
CCCCCCCCCCCCACCAACTTCAACAGGCTTGTGGGAAGGGTCTTCGGGGG
CCTCCCGAACGGCCGGCTTGGACGGCATTCGGTGAAGGCGGCGAGATCGC
CGGTTGACCCCGGAACGGAACCATCGACTCCATGTTCTTCTTTCTCGGAC
CTCGGGAACATAAACACGTGGGAGACTCATCGTACACCCCAGACAGAAGG
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19784:1352..3002-

>mRNA_Ecto-sp13_S_contig19784.6403.1 ID=mRNA_Ecto-sp13_S_contig19784.6403.1|Name=mRNA_Ecto-sp13_S_contig19784.6403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19784:1352..3002- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGTCATCGTCGAAACTGGTGACGGAGGGTGGGATACCCAGGAGGA
GCCGAGGGACATGCTTGTGGGAAGGGTCTTCGGGGGCCTCCCGAACGGCC
GGCTTGGACGGCATTCGGTGAAGGCGGCGAGATCGCCGGTTGACCCCGGA
ACGGAACCATCGACTCCATGTTCTTCTTTCTCGGACCTCGGGAACATAAA
CACGTGGGAGACTCATCGTACACCCCAGACAGAAGGT
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