mRNA_Ecto-sp13_S_contig19766.6394.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19766.6394.1
Unique NamemRNA_Ecto-sp13_S_contig19766.6394.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19766.6394.1 vs. uniprot
Match: D8LCI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI5_ECTSI)

HSP 1 Score: 601 bits (1549), Expect = 1.370e-207
Identity = 423/557 (75.94%), Postives = 434/557 (77.92%), Query Frame = 1 
Query:    1 SFTCRGPLRSSSRNSERRRIQVVLPYGVGSGAAGGXXXXXXXXXXXXXXXXAGAAGTMMSLLDPPNPTALEARLNEDRRMKRGRDLRRERHAFLSRLTQEREERVLLEAWAASTIQALFRGFLARPRPPRPRPRKELTPAESNRRLVADLQAILARAGLPTIPGLGPDGRKASDGTAWGQGRGGATSGHGGGGMAGAGERGLKRSRSRRQRAFEDEMSTHITRVVRGFLERRRFGRRWAVWHRKRRWSSASRIQNCWRAYRKRMGWRELESEATRQQFRRVAVVVQVMDRAAAKIQARWRGVACRMGLARKATDDALWKRRMVSAVTIQVAARRRAAIVRYGSKLTLGAARREREARAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXSATSEGGEAARDRAEPARGGETGRREAAAAVVGMAAVAGSEGGRDKEQRTTAAATRNAGGKGRGA-EASTSKIQLLKLQQEDQQQKHEGPAHGSETGLSNQKAGLSPTGVGSADGSGXXXXTGLCGGLSSDVRKRVSQEAS---LQFVQESIQAAVVSARKHSVEGTGSQ 1659
            S T R  + SSSRNSERRRIQVVLPYGVGSGAAGGXXXXXXXXXXXX    AGA GTMMSLLDPPNPTALEARLNE+RR+KRGRDLRRERHAFLSRLTQEREERVLLEAWAASTIQALFRGFLARPRPPRPRPRKELTPAESNRRLVADLQAILARAGLPTIPGLGPDGRK S+GTAWGQGR                          RQRAFEDEMST ITRVVRGFLERRRFGRRWAVW RKRR SSASRIQNCWRAYRKRMGWRELESE              VMDRAAAKIQARWRGVACRMGLARKATDDAL KRRMVSAVTIQ AARRRAAIVRYGSKLTLGAARREREAR+AA XXXXXXXXXXXXXXXXXXXXXXXXX +ATSEGGE+AR RA+PARG ETG REAAA+                              KGRGA    TSKI+LL+LQQEDQQQKH GPAHGSETGLSN K GLSPTGVGSADG  XXXX                       LQFVQESIQAAVVSARKHSVEGTGSQ
Sbjct:  102 SNTTRPVVVSSSRNSERRRIQVVLPYGVGSGAAGGXXXXXXXXXXXXASGRAGATGTMMSLLDPPNPTALEARLNENRRLKRGRDLRRERHAFLSRLTQEREERVLLEAWAASTIQALFRGFLARPRPPRPRPRKELTPAESNRRLVADLQAILARAGLPTIPGLGPDGRKTSEGTAWGQGRXXXXXXXXXXXXXXXXXXXXXXXXXXRQRAFEDEMSTRITRVVRGFLERRRFGRRWAVWDRKRRRSSASRIQNCWRAYRKRMGWRELESE--------------VMDRAAAKIQARWRGVACRMGLARKATDDALGKRRMVSAVTIQAAARRRAAIVRYGSKLTLGAARREREARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXVAATSEGGESARGRAQPARGVETGDREAAASXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXKGRGAARPPTSKIKLLELQQEDQQQKHGGPAHGSETGLSNLKVGLSPTGVGSADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQFVQESIQAAVVSARKHSVEGTGSQ 643
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BLAST of mRNA_Ecto-sp13_S_contig19766.6394.1 vs. uniprot
Match: A0A6H5J9Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z3_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 4.260e-113
Identity = 191/217 (88.02%), Postives = 195/217 (89.86%), Query Frame = 1 
Query:  172 MMSLLDPPNPTALEARLNEDRRMKRGRDLRRERHAFLSRLTQEREERVLLEAWAASTIQALFRGFLARPRPPRPRPRKELTPAESNRRLVADLQAILARAGLPTIPGLGPDGRKASDGTAWGQGRGGATSGHGGGGMAGAGERGLKRSRSRRQRAFEDEMSTHITRVVRGFLERRRFGRRWAVWHRKRRWSSASRIQNCWRAYRKRMGWRELESEAT 822
            MMSLLDPPNPTALEARLNEDRR KRGR+LR ERHAFLSRLT+EREERVLLEAWAASTIQALFRGFL RPRP RPRPRKELTPAESNRRLVADLQAILARAGLPTIPGLGPDGRKAS+GTAWGQGRG ATS              LKRSRSRRQRAFEDEMST IT VVRGFLERRRFGRRWAVW RKRRWSSASRIQNCWRAYRKRMGWRELESEA+
Sbjct:    1 MMSLLDPPNPTALEARLNEDRRAKRGRNLRLERHAFLSRLTREREERVLLEAWAASTIQALFRGFLTRPRPKRPRPRKELTPAESNRRLVADLQAILARAGLPTIPGLGPDGRKASEGTAWGQGRG-ATSXXXXXXXXXXXXXXLKRSRSRRQRAFEDEMSTRITSVVRGFLERRRFGRRWAVWDRKRRWSSASRIQNCWRAYRKRMGWRELESEAS 216
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19766.6394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCI5_ECTSI1.370e-20775.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9Z3_9PHAE4.260e-11388.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19766contigEcto-sp13_S_contig19766:810..3029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score615.5
Seed ortholog evalue2.4e-173
Seed eggNOG ortholog2880.D8LCI5
Model size1662
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.IQ calmodulin-binding motif
EggNOG OGs2DA72@1,2S5F6@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005160.1
Cds size1662
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.0943005-CDS-Ecto-sp13_S_contig19766:809..16291681462998.0943005-CDS-Ecto-sp13_S_contig19766:809..1629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19766 810..1629 +
1681462998.1067472-CDS-Ecto-sp13_S_contig19766:1881..20801681462998.1067472-CDS-Ecto-sp13_S_contig19766:1881..2080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19766 1882..2080 +
1681462998.1175222-CDS-Ecto-sp13_S_contig19766:2386..30291681462998.1175222-CDS-Ecto-sp13_S_contig19766:2386..3029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19766 2387..3029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19766.6394.1prot_Ecto-sp13_S_contig19766.6394.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19766 810..3029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19766.6394.1

>prot_Ecto-sp13_S_contig19766.6394.1 ID=prot_Ecto-sp13_S_contig19766.6394.1|Name=mRNA_Ecto-sp13_S_contig19766.6394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=554bp
SFTCRGPLRSSSRNSERRRIQVVLPYGVGSGAAGGTAGIGGGYRGGRGSG
RAGAAGTMMSLLDPPNPTALEARLNEDRRMKRGRDLRRERHAFLSRLTQE
REERVLLEAWAASTIQALFRGFLARPRPPRPRPRKELTPAESNRRLVADL
QAILARAGLPTIPGLGPDGRKASDGTAWGQGRGGATSGHGGGGMAGAGER
GLKRSRSRRQRAFEDEMSTHITRVVRGFLERRRFGRRWAVWHRKRRWSSA
SRIQNCWRAYRKRMGWRELESEATRQQFRRVAVVVQVMDRAAAKIQARWR
GVACRMGLARKATDDALWKRRMVSAVTIQVAARRRAAIVRYGSKLTLGAA
RREREARAAAEAARPRRRWNRGGGTGGTTGAAAGTAASATSEGGEAARDR
AEPARGGETGRREAAAAVVGMAAVAGSEGGRDKEQRTTAAATRNAGGKGR
GAEASTSKIQLLKLQQEDQQQKHEGPAHGSETGLSNQKAGLSPTGVGSAD
GSGGGGGTGLCGGLSSDVRKRVSQEASLQFVQESIQAAVVSARKHSVEGT
GSQ*
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mRNA from alignment at Ecto-sp13_S_contig19766:810..3029+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19766.6394.1 ID=mRNA_Ecto-sp13_S_contig19766.6394.1|Name=mRNA_Ecto-sp13_S_contig19766.6394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2220bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19766:810..3029+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTTTACATGTCGGGGACCTCTTCGTTCCAGCTCGAGAAACAGCGAACG
CCGCCGGATACAGGTCGTCCTCCCATACGGCGTCGGCTCGGGGGCAGCCG
GAGGGACGGCAGGAATCGGCGGGGGGTACAGGGGCGGCAGAGGGAGCGGC
CGTGCGGGAGCGGCGGGCACCATGATGAGCCTTCTCGACCCCCCGAACCC
CACCGCGCTCGAGGCTCGGCTGAACGAGGACCGTCGGATGAAGCGCGGCC
GCGACCTCCGGCGAGAGCGCCACGCCTTCCTCTCGCGGCTCACACAGGAG
CGAGAGGAGCGGGTCCTTCTAGAGGCCTGGGCGGCATCGACGATCCAGGC
ACTTTTCCGGGGGTTCCTGGCCCGGCCCCGCCCGCCGCGGCCCCGCCCGC
GGAAAGAGCTCACGCCGGCGGAGTCAAACCGCAGGCTCGTCGCCGACCTG
CAGGCGATCCTCGCCCGCGCCGGCCTGCCGACCATCCCCGGGCTCGGGCC
CGACGGGAGAAAGGCATCGGATGGTACCGCTTGGGGACAGGGGCGAGGGG
GGGCAACAAGCGGCCACGGCGGCGGCGGAATGGCGGGAGCAGGGGAAAGG
GGCCTAAAGCGCTCGAGGTCGCGGAGGCAGCGGGCTTTCGAGGACGAGAT
GAGCACGCATATCACCAGGGTGGTACGGGGCTTCCTCGAGCGGAGGCGCT
TCGGGAGGCGGTGGGCGGTGTGGCACAGGAAGCGGCGTTGGTCGAGCGCG
TCTCGCATACAGAACTGCTGGAGGGCGTACCGCAAGCGCATGGGCTGGCG
CGAGCTCGAGTCCGAGGCAAGTTGTCCCTTTTGTAGGGCGAACCGTACGC
AGCCAGAGAGCTACCGTACCGCCGGTGATCCAACCCGATGCTGTTGTTCA
CGTGCGTTTCTTTTATTAAACTTTGGTCCTCCACCTCAAGAATATCTGAC
GTGTATAGGGAACACTGTTTGCCCTACGCGCATCACAGCATATTTCAAGG
TTTTAGGCTGGGTGCAGTCTTTGTACGTAGGTTTCAAGACCTTGTCATAC
CACTGGCCGGCGAGCCGAGAAGCAAGGCAACAATTTCGTCGTGTGGCGGT
GGTGGTTCAGGTGATGGACCGTGCGGCGGCCAAGATACAGGCGCGCTGGC
GCGGCGTGGCCTGCCGCATGGGTCTCGCCCGCAAGGCCACCGACGACGCC
CTCTGGAAGAGGAGAATGGTATCGGCAGTCACCATCCAGGTGGCGGCGAG
GAGGCGTGCCGCGATCGTGAGGTGCGGTGCTTGCCAGAACTTCTCCCTAC
ACCGTTGGATAGGTCATTGATCATTCGCAGTCAAACATCTCACCGTTTGA
CTCCTGTTTGTGTACCGTAGTGCCTCTCTCGACCCTCTTTTCAATGGTGC
GGCGAAAGGAACGTCGGGATATCATTGGCGGTAACCCACAGACCAACATT
GCGCAGCGAAGGGGCAGCCTACGAAAGGGGTTGATCTCAAGCGAGCGCAC
AAACAAAATGTCCATCCCTCCCCCGCCCGTATTGGCCGGTTTTTCCCCGA
TGGGAACGCGTGGCGCATGCCCGACAGGTACGGTTCGAAGCTAACACTTG
GCGCCGCCAGGCGAGAACGGGAGGCGAGGGCGGCGGCTGAGGCAGCAAGG
CCTCGCCGGCGGTGGAACCGGGGGGGGGGGACGGGGGGCACCACGGGTGC
TGCTGCCGGCACCGCAGCGTCGGCGACATCGGAGGGCGGCGAAGCAGCAA
GAGATCGCGCGGAGCCTGCGAGAGGCGGTGAGACAGGACGCCGGGAAGCT
GCTGCTGCTGTGGTCGGGATGGCCGCGGTGGCTGGTAGCGAGGGTGGCCG
AGACAAAGAACAACGGACAACGGCGGCGGCGACAAGGAATGCGGGCGGAA
AAGGGAGAGGGGCTGAAGCATCGACATCGAAGATCCAGCTGTTAAAACTG
CAGCAGGAGGACCAGCAGCAGAAGCATGAGGGGCCCGCTCACGGGTCGGA
GACTGGCCTGTCCAACCAGAAAGCCGGGCTGTCACCTACTGGGGTTGGAT
CAGCAGATGGCAGCGGCGGCGGCGGCGGGACCGGGTTGTGCGGCGGACTG
TCCTCCGACGTGAGAAAAAGAGTGTCGCAAGAGGCGAGCCTACAGTTCGT
CCAGGAAAGCATTCAAGCCGCGGTCGTCAGTGCGCGGAAGCACTCGGTAG
AGGGAACAGGCAGCCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19766:810..3029+

>mRNA_Ecto-sp13_S_contig19766.6394.1 ID=mRNA_Ecto-sp13_S_contig19766.6394.1|Name=mRNA_Ecto-sp13_S_contig19766.6394.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19766:810..3029+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTTTACATGTCGGGGACCTCTTCGTTCCAGCTCGAGAAACAGCGAACG
CCGCCGGATACAGGTCGTCCTCCCATACGGCGTCGGCTCGGGGGCAGCCG
GAGGGACGGCAGGAATCGGCGGGGGGTACAGGGGCGGCAGAGGGAGCGGC
CGTGCGGGAGCGGCGGGCACCATGATGAGCCTTCTCGACCCCCCGAACCC
CACCGCGCTCGAGGCTCGGCTGAACGAGGACCGTCGGATGAAGCGCGGCC
GCGACCTCCGGCGAGAGCGCCACGCCTTCCTCTCGCGGCTCACACAGGAG
CGAGAGGAGCGGGTCCTTCTAGAGGCCTGGGCGGCATCGACGATCCAGGC
ACTTTTCCGGGGGTTCCTGGCCCGGCCCCGCCCGCCGCGGCCCCGCCCGC
GGAAAGAGCTCACGCCGGCGGAGTCAAACCGCAGGCTCGTCGCCGACCTG
CAGGCGATCCTCGCCCGCGCCGGCCTGCCGACCATCCCCGGGCTCGGGCC
CGACGGGAGAAAGGCATCGGATGGTACCGCTTGGGGACAGGGGCGAGGGG
GGGCAACAAGCGGCCACGGCGGCGGCGGAATGGCGGGAGCAGGGGAAAGG
GGCCTAAAGCGCTCGAGGTCGCGGAGGCAGCGGGCTTTCGAGGACGAGAT
GAGCACGCATATCACCAGGGTGGTACGGGGCTTCCTCGAGCGGAGGCGCT
TCGGGAGGCGGTGGGCGGTGTGGCACAGGAAGCGGCGTTGGTCGAGCGCG
TCTCGCATACAGAACTGCTGGAGGGCGTACCGCAAGCGCATGGGCTGGCG
CGAGCTCGAGTCCGAGGCAACAAGGCAACAATTTCGTCGTGTGGCGGTGG
TGGTTCAGGTGATGGACCGTGCGGCGGCCAAGATACAGGCGCGCTGGCGC
GGCGTGGCCTGCCGCATGGGTCTCGCCCGCAAGGCCACCGACGACGCCCT
CTGGAAGAGGAGAATGGTATCGGCAGTCACCATCCAGGTGGCGGCGAGGA
GGCGTGCCGCGATCGTGAGGTACGGTTCGAAGCTAACACTTGGCGCCGCC
AGGCGAGAACGGGAGGCGAGGGCGGCGGCTGAGGCAGCAAGGCCTCGCCG
GCGGTGGAACCGGGGGGGGGGGACGGGGGGCACCACGGGTGCTGCTGCCG
GCACCGCAGCGTCGGCGACATCGGAGGGCGGCGAAGCAGCAAGAGATCGC
GCGGAGCCTGCGAGAGGCGGTGAGACAGGACGCCGGGAAGCTGCTGCTGC
TGTGGTCGGGATGGCCGCGGTGGCTGGTAGCGAGGGTGGCCGAGACAAAG
AACAACGGACAACGGCGGCGGCGACAAGGAATGCGGGCGGAAAAGGGAGA
GGGGCTGAAGCATCGACATCGAAGATCCAGCTGTTAAAACTGCAGCAGGA
GGACCAGCAGCAGAAGCATGAGGGGCCCGCTCACGGGTCGGAGACTGGCC
TGTCCAACCAGAAAGCCGGGCTGTCACCTACTGGGGTTGGATCAGCAGAT
GGCAGCGGCGGCGGCGGCGGGACCGGGTTGTGCGGCGGACTGTCCTCCGA
CGTGAGAAAAAGAGTGTCGCAAGAGGCGAGCCTACAGTTCGTCCAGGAAA
GCATTCAAGCCGCGGTCGTCAGTGCGCGGAAGCACTCGGTAGAGGGAACA
GGCAGCCAGTAG
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