mRNA_Ecto-sp13_S_contig1971.6361.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1971.6361.1
Unique NamemRNA_Ecto-sp13_S_contig1971.6361.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1971.6361.1 vs. uniprot
Match: D8LJM9_ECTSI (Brix domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJM9_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 4.040e-64
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKGEGDTKKTRARLQELGPRFTLKMRWLQEGTFDTQFGEYEWIHKRKEMDSTRRTFHL 285
            LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKGEGDTKKTRARLQELGPRFTLKMRWLQEGTFDTQ+GEYEWIHKRKEMDSTRRTFHL
Sbjct:  213 LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKGEGDTKKTRARLQELGPRFTLKMRWLQEGTFDTQYGEYEWIHKRKEMDSTRRTFHL 307
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BLAST of mRNA_Ecto-sp13_S_contig1971.6361.1 vs. uniprot
Match: A0A7S1CY89_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CY89_CYCTE)

HSP 1 Score: 165 bits (418), Expect = 1.470e-50
Identity = 79/99 (79.80%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    1 LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKGEGDT----KKTRARLQELGPRFTLKMRWLQEGTFDTQFGEYEWIHKRKEMDSTRRTFHL 285
            +GS FPH  +F GRQVVTFHNQRDYIFVR HRYIF EGK   D     KKTRARLQELGPRFTLK+RWLQEGTFDTQFGEYEW HKRKEMD+TRR FHL
Sbjct:   63 MGSLFPHNAQFEGRQVVTFHNQRDYIFVRHHRYIFYEGKQVLDEAKGLKKTRARLQELGPRFTLKLRWLQEGTFDTQFGEYEWFHKRKEMDTTRRRFHL 161
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BLAST of mRNA_Ecto-sp13_S_contig1971.6361.1 vs. uniprot
Match: A0A7S2PK49_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PK49_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.550e-49
Identity = 74/98 (75.51%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKG---EGDTKKTRARLQELGPRFTLKMRWLQEGTFDTQFGEYEWIHKRKEMDSTRRTFHL 285
            LGS FPH  +F GRQV TFHNQRD+IFVR HRY+F EG     E   KKT+A+LQELGPRFT+KMRWLQEGTFDTQFGEYEW+HKRKEMD+TRR FHL
Sbjct:    5 LGSLFPHNAQFQGRQVATFHNQRDFIFVRHHRYVFKEGNQVNKETGKKKTKAKLQELGPRFTMKMRWLQEGTFDTQFGEYEWMHKRKEMDTTRRKFHL 102
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BLAST of mRNA_Ecto-sp13_S_contig1971.6361.1 vs. uniprot
Match: K0RZU9_THAOC (Brix domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RZU9_THAOC)

HSP 1 Score: 164 bits (415), Expect = 7.470e-48
Identity = 77/98 (78.57%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKG---EGDTKKTRARLQELGPRFTLKMRWLQEGTFDTQFGEYEWIHKRKEMDSTRRTFHL 285
            LGS FPH  +F GRQV TFHNQRD+IFVR HRYIF EGK    E   KKT+ARLQELGPRFT+KMRWLQEGTFDTQFGEYEW HKRKEMD+TRR FHL
Sbjct:  249 LGSLFPHNAQFQGRQVATFHNQRDFIFVRHHRYIFEEGKDTSKETKEKKTKARLQELGPRFTIKMRWLQEGTFDTQFGEYEWFHKRKEMDTTRRKFHL 346
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BLAST of mRNA_Ecto-sp13_S_contig1971.6361.1 vs. uniprot
Match: A0A7S1B3B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3B9_9STRA)

HSP 1 Score: 160 bits (405), Expect = 8.770e-47
Identity = 78/97 (80.41%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 LGSFFPHE-PEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKG---EGDTKKTRARLQELGPRFTLKMRWLQEGTFDTQFGEYEWIHKRKEMDSTRRTF 279
            LGS FPH+ P+F GRQV TFHNQRD+IFVR HRYIFAEGK    E   KKTRARLQELGPRFTLKMRWLQEG FDT+FGEYEWIHKRKEMD+TRR F
Sbjct:  210 LGSLFPHDAPQFEGRQVATFHNQRDFIFVRHHRYIFAEGKEDNPETGKKKTRARLQELGPRFTLKMRWLQEGVFDTKFGEYEWIHKRKEMDTTRRRF 306
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BLAST of mRNA_Ecto-sp13_S_contig1971.6361.1 vs. uniprot
Match: A0A6U3UYI3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UYI3_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.740e-46
Identity = 76/98 (77.55%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKGEG-DTKK--TRARLQELGPRFTLKMRWLQEGTFDTQFGEYEWIHKRKEMDSTRRTFHL 285
            LGS FPH  +F GRQV TFHNQRD+IFVR HRY+F EGK    +TKK  T+ARLQELGPRFTLKM+WLQEGTFDTQFGEYEW HKRKEMD+TRR FHL
Sbjct:  251 LGSLFPHNAQFKGRQVATFHNQRDFIFVRHHRYVFEEGKETNKETKKPKTKARLQELGPRFTLKMKWLQEGTFDTQFGEYEWFHKRKEMDTTRRKFHL 348
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BLAST of mRNA_Ecto-sp13_S_contig1971.6361.1 vs. uniprot
Match: A0A1E7FDN1_9STRA (Brix-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDN1_9STRA)

HSP 1 Score: 154 bits (388), Expect = 7.290e-46
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:    1 LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGK----------GEGDTKKT-----RARLQELGPRFTLKMRWLQEGTFDTQFGEYEWIHKRKEMDSTRRTFHL 285
            LGS FPH+ EF GRQVVTFHNQRDY+FVR HRY+F E K          GE +   T     +ARLQELGPRFTLK+RW+Q GTFDTQFGEYEWIHKRKEMD+TRR FHL
Sbjct:   62 LGSLFPHDAEFQGRQVVTFHNQRDYVFVRHHRYVFEEKKESMIKKAQKPGEPEKPLTIKDRVKARLQELGPRFTLKLRWIQSGTFDTQFGEYEWIHKRKEMDTTRRRFHL 171
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BLAST of mRNA_Ecto-sp13_S_contig1971.6361.1 vs. uniprot
Match: A0A4D9CX49_9STRA (Brix domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX49_9STRA)

HSP 1 Score: 157 bits (396), Expect = 3.400e-45
Identity = 77/115 (66.96%), Postives = 85/115 (73.91%), Query Frame = 1 
Query:    1 LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKGE--------------GDTKKT------RARLQELGPRFTLKMRWLQEGTFDTQFGEYEWIHKRKEMDSTRRTFHL 285
            LGSFFPH PEF GRQVVTFHNQRD++FVR HRY+F E K +              GD  K       RARLQELGPRFTLK+RWLQEGTFDT+FGEYEW+HKRKEMD+TRR FHL
Sbjct:  214 LGSFFPHAPEFRGRQVVTFHNQRDFLFVRHHRYVFDEKKAKSVPEINNPKKRKSAGDGSKAIAAGGIRARLQELGPRFTLKLRWLQEGTFDTKFGEYEWLHKRKEMDTTRRRFHL 328
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BLAST of mRNA_Ecto-sp13_S_contig1971.6361.1 vs. uniprot
Match: B7FZV9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZV9_PHATC)

HSP 1 Score: 154 bits (389), Expect = 1.480e-44
Identity = 72/95 (75.79%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKGEGDTKKTRARLQELGPRFTLKMRWLQEGTFDTQFGEYEWIHKRKEMDSTRRTFHL 285
            LGS FPH+ +F GRQVVTFHNQRDYIFVR HRYIF E +G+         LQELGPRFTLK+RW+QEGTFDTQFGEYEWIHKRKEMD+TRR FHL
Sbjct:  202 LGSVFPHDAQFQGRQVVTFHNQRDYIFVRHHRYIFRELEGKAKD------LQELGPRFTLKLRWIQEGTFDTQFGEYEWIHKRKEMDTTRRKFHL 290
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BLAST of mRNA_Ecto-sp13_S_contig1971.6361.1 vs. uniprot
Match: B8BQI2_THAPS (Brix domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQI2_THAPS)

HSP 1 Score: 151 bits (381), Expect = 2.970e-43
Identity = 72/95 (75.79%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    1 LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKGEGDTKKTRARLQELGPRFTLKMRWLQEGTFDTQFGEYEWIHKRKEMDSTRRTFHL 285
            LGS FPH  +F GRQV TFHNQRD+IFVR HRY        G  KKT+ARLQELGPRFT+KMRWLQEGTFDTQFGEYEW HKRKEMD+TRR FHL
Sbjct:  206 LGSLFPHNAQFQGRQVATFHNQRDFIFVRHHRYEMICCLETGK-KKTKARLQELGPRFTMKMRWLQEGTFDTQFGEYEWFHKRKEMDTTRRKFHL 299
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1971.6361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJM9_ECTSI4.040e-6498.95Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S1CY89_CYCTE1.470e-5079.80Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2PK49_9STRA1.550e-4975.51Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0RZU9_THAOC7.470e-4878.57Brix domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S1B3B9_9STRA8.770e-4780.41Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A6U3UYI3_9STRA1.740e-4677.55Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1E7FDN1_9STRA7.290e-4668.18Brix-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A4D9CX49_9STRA3.400e-4566.96Brix domain-containing protein n=2 Tax=Monodopsida... [more]
B7FZV9_PHATC1.480e-4475.79Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B8BQI2_THAPS2.970e-4375.79Brix domain-containing protein n=1 Tax=Thalassiosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1971contigEcto-sp13_S_contig1971:13418..15138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score204.1
Seed ortholog evalue2.8e-50
Seed eggNOG ortholog2880.D8LJM9
Preferred nameRPF1
Model size288
KEGG koko:K14846
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000054,GO:0000055,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065003,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons3
EggNOG free text desc.rRNA primary transcript binding
EggNOG OGsCOG2136@1,KOG2780@2759
Cds size288
COG Functional cat.AJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462995.336473-CDS-Ecto-sp13_S_contig1971:13417..135491681462995.336473-CDS-Ecto-sp13_S_contig1971:13417..13549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1971 13418..13549 -
1681462995.347301-CDS-Ecto-sp13_S_contig1971:14432..145671681462995.347301-CDS-Ecto-sp13_S_contig1971:14432..14567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1971 14433..14567 -
1681462995.3577907-CDS-Ecto-sp13_S_contig1971:15117..151381681462995.3577907-CDS-Ecto-sp13_S_contig1971:15117..15138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1971 15118..15138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1971.6361.1prot_Ecto-sp13_S_contig1971.6361.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1971 13418..15138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1971.6361.1

>prot_Ecto-sp13_S_contig1971.6361.1 ID=prot_Ecto-sp13_S_contig1971.6361.1|Name=mRNA_Ecto-sp13_S_contig1971.6361.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
LGSFFPHEPEFNGRQVVTFHNQRDYIFVRFHRYIFAEGKGEGDTKKTRAR
LQELGPRFTLKMRWLQEGTFDTQFGEYEWIHKRKEMDSTRRTFHL*
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mRNA from alignment at Ecto-sp13_S_contig1971:13418..15138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1971.6361.1 ID=mRNA_Ecto-sp13_S_contig1971.6361.1|Name=mRNA_Ecto-sp13_S_contig1971.6361.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1721bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1971:13418..15138- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGGATCGTTTTTTCCGCACGTGAGTGTGTTGTCGTTGTTGCTGCTGCT
GTTGTTTTTGTTGTTTTTGGCTGTTGTTCGTTTTCTTGTTGTTGACGGTG
AGAGCCTTGAACCTTCACCAACGCGCTTGCGTCATTAACGCTTACAACTG
ATCTTAGTTGGGCAAATGGTCGTACCACACATGGTCTCAGTTGGGAGATC
CTATCGCACCCAACCAAGGCGGAGGGCACGATTGATCGCGCTGGTTTAAG
AGCTTGAAGACACGACCATGTGTGCATGGCCTGCGTGGGTTTGGTATTTG
TTACCGTTTCTCTGGTTGCGCGCGCTGCCCAGGATTCAACTGGCGACCGG
TGGTCAGCTTCAAAACAGACCCAAGGGGCAGATTGATCCAATTGGGAATC
GGTTTCCCTTCAGCGCCGCTTGGCGGTGCTGTAATCAATCGCACCGCTTG
CTGCCAATCTCGTGTGATTTTCTTTTTCTTTTGAAGACAAAACAGTTTCA
TTTCCATCCACAGAGCAGAGTCCAGGATGAATTGGCAAATCCAAAATTCG
TTTTGTTCTGTTTTTTCGCAGGAACCTGAGTTCAACGGGCGTCAGGTGGT
GACGTTCCACAACCAGCGCGACTACATCTTTGTGCGGTTTCACCGCTACA
TTTTCGCCGAGGGGAAGGGGGAAGGGGACACGAAGAAGACGAGGGCGAGA
CTGCAGGTGTGTGTATGTGTGTTTTTATTAGCATCGACCGCGCTTAGCGG
CTGACCAGTGACAAGACGCTAGTCTTAGTGCGGTTGAAAGTGTGTGTGTT
TGTGTATGCCTTCTATTATGATTAGCATCGACCGCGCTTACCGACTGACC
ATTGAAAAGACGTCAGTCTCAGTGCGGTTGGAACAAAAAATGCCTCTCAA
GGCTTCCATGATCTGAGACTCCGTGAGGGGGCGTCGTGGAAGAGGCCGTA
CTACTTTCCGAATTAAAGACAGATACCGTAACAACAGAAGAAAAAAACTG
CACATGTTTACCATGGCTGCTACTAGGTGTGTGTTCGTCCCATCTCTTCT
GGCGCTAGTCTGCACCCCATTCGGTTTATATATCTCACGTATCAGCCGGG
GTCACACAAGAGGAAGATAGGTTGTAATTTTTTTTGGAAGGTTCATTGTT
GTGTGTGTCGCGCGCGAGGAGAGGCAGAGTCGGGAGCAGTGTGCGTGCGC
GTCTCATCCCGAACGTGTTCCACACAAGTTGTTGAAATTCTGCTCGTAAG
AGACATCCGGTCTTCGTTTTGTTATGTTCTCCCTTTCACACAAGTGGTTG
CGAATCCCAGGAGTACCGCCGTCACTAGGACAGCTCAGAAGACCCCCGTT
TAAAGATCGCCAGGGAAGCAGAGCAGAAAACGCTGTGCCAAAGGGTGGTA
TCCCCCAGCCACCCTATTTTTTGTGTGAAGTAATCTACCTGCGTGTAATA
ACGCATGCTTCGAAGTATGAGATGGACTCATTTTCCCCGCGCTTCCTCCA
TCACCGCACCAGGAGCGCGTGGATTGACGCACACTTCAGAGTATGATACT
ACCTCTCTCTCCCATTGCTTTTGTCCATCGCCGAACCAGGAGCTGGGACC
GCGATTCACTCTCAAGATGCGCTGGTTGCAAGAAGGCACGTTCGACACGC
AGTTCGGCGAGTACGAGTGGATCCACAAGCGGAAGGAGATGGACTCCACG
CGAAGAACATTCCACCTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1971:13418..15138-

>mRNA_Ecto-sp13_S_contig1971.6361.1 ID=mRNA_Ecto-sp13_S_contig1971.6361.1|Name=mRNA_Ecto-sp13_S_contig1971.6361.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1971:13418..15138- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGGATCGTTTTTTCCGCACGAACCTGAGTTCAACGGGCGTCAGGTGGT
GACGTTCCACAACCAGCGCGACTACATCTTTGTGCGGTTTCACCGCTACA
TTTTCGCCGAGGGGAAGGGGGAAGGGGACACGAAGAAGACGAGGGCGAGA
CTGCAGGAGCTGGGACCGCGATTCACTCTCAAGATGCGCTGGTTGCAAGA
AGGCACGTTCGACACGCAGTTCGGCGAGTACGAGTGGATCCACAAGCGGA
AGGAGATGGACTCCACGCGAAGAACATTCCACCTGTAG
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