mRNA_Ecto-sp13_S_contig19469.6256.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19469.6256.1
Unique NamemRNA_Ecto-sp13_S_contig19469.6256.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19469.6256.1 vs. uniprot
Match: D8LNL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL6_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 1.470e-78
Identity = 125/134 (93.28%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 WTEQEEKLLNKLIMDRMERGEDMSETMLTGDEEVDVPWAEVARIIKSRNRIACRKKWDYLQMQRRQKWQYVRDKSGSAASVNLAFVKAIIDTGAADESELNWSSLPYPRANLKWKNLRERELQAPNANLQFREV 402
            WTEQEEKLLNKL+MDRME GEDMSE MLTG+EEVDVPWAEVARIIKSRNRIACRKKWDYLQMQRRQKWQYVRD  GSAAS+NLAFVKAII TGAADESELNWSSLPYPRANLKWKNLRERELQAPNANLQFRE 
Sbjct:  126 WTEQEEKLLNKLMMDRMECGEDMSEVMLTGNEEVDVPWAEVARIIKSRNRIACRKKWDYLQMQRRQKWQYVRDTRGSAASINLAFVKAIIGTGAADESELNWSSLPYPRANLKWKNLRERELQAPNANLQFREA 259
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BLAST of mRNA_Ecto-sp13_S_contig19469.6256.1 vs. uniprot
Match: A0A6H5K2Z7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z7_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 2.000e-78
Identity = 127/134 (94.78%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 WTEQEEKLLNKLIMDRMERGEDMSETMLTGDEEVDVPWAEVARIIKSRNRIACRKKWDYLQMQRRQKWQYVRDKSGSAASVNLAFVKAIIDTGAADESELNWSSLPYPRANLKWKNLRERELQAPNANLQFREV 402
            WTEQEEKLLNKLIMDRME  EDMSE MLTGDE+VDVPWAEVARIIKSRNRIACRKKWDYLQMQRRQK QYVRD SGSAASVNLAFVKAIIDTGAADESELNWSSLPYPRANLKWKNLRERELQAPNANLQFRE 
Sbjct:  219 WTEQEEKLLNKLIMDRMECSEDMSEVMLTGDEDVDVPWAEVARIIKSRNRIACRKKWDYLQMQRRQKRQYVRDTSGSAASVNLAFVKAIIDTGAADESELNWSSLPYPRANLKWKNLRERELQAPNANLQFREA 352
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19469.6256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNL6_ECTSI1.470e-7893.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2Z7_9PHAE2.000e-7894.78MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19469contigEcto-sp13_S_contig19469:525..3214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score252.3
Seed ortholog evalue1.3e-64
Seed eggNOG ortholog2880.D8LNL6
Model size417
KEGG koko:K15225
KEGG Pathwayko04918,map04918
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0051@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-08_006660.1
Cds size417
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.4353054-CDS-Ecto-sp13_S_contig19469:524..5881681462987.4353054-CDS-Ecto-sp13_S_contig19469:524..588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19469 525..588 +
1681462987.4517114-CDS-Ecto-sp13_S_contig19469:1406..15251681462987.4517114-CDS-Ecto-sp13_S_contig19469:1406..1525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19469 1407..1525 +
1681462987.4607322-CDS-Ecto-sp13_S_contig19469:2980..32141681462987.4607322-CDS-Ecto-sp13_S_contig19469:2980..3214Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19469 2981..3214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19469.6256.1prot_Ecto-sp13_S_contig19469.6256.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19469 525..3214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19469.6256.1

>prot_Ecto-sp13_S_contig19469.6256.1 ID=prot_Ecto-sp13_S_contig19469.6256.1|Name=mRNA_Ecto-sp13_S_contig19469.6256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
WTEQEEKLLNKLIMDRMERGEDMSETMLTGDEEVDVPWAEVARIIKSRNR
IACRKKWDYLQMQRRQKWQYVRDKSGSAASVNLAFVKAIIDTGAADESEL
NWSSLPYPRANLKWKNLRERELQAPNANLQFREVRLNY*
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mRNA from alignment at Ecto-sp13_S_contig19469:525..3214+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19469.6256.1 ID=mRNA_Ecto-sp13_S_contig19469.6256.1|Name=mRNA_Ecto-sp13_S_contig19469.6256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19469:525..3214+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGACTGAGCAAGAGGAGAAGCTCCTTAACAAGCTCATCATGGACCGGAT
GGAGCGCGGTGAAGGTGAGCGAGATGAACAGCTACAGCGCACCAAAACAT
GTTTGTGGTTGTTGTTCATTGTACCGTTCGGTGTTGAGCGTTGTCTTTTT
TTTTGCAAGGCCCCTGCGTAAGCTTTGAAGAGGTGGCCGACATGTGTAGT
TCACTCGCGTTTATTTAACGTGGCGGTCTCGATCGCAAGATTGTACGTTT
TCTCTTGTATTTCTGCACAAGTTCAATAGAGCAATACAGCGACAAAGAGC
GTTTTGGAGAGAATACTGGTAGACCATGGGATAGACCATTGGAGCAGCGA
GGAAATAGGCACTACCGTATACGACACAAGATAACACCCTCCCTGGACGG
ATTTTCAATGCTTGATTTGTCAACATCAGAAAGAGTGGGGGTACCGAAAA
TGGCGGCGTTGAAACTGTCTCGTCGAGAGCTTCCCGGCAATTTATCGTTT
CATTTATGCATCCTCGTCATCGTGGCGTAATGAAGCTTTGAATCTCGGTC
GAGGGTGTGTGTTATCTTGTATCGTATACGGTACTGGAGCACCCAGGTCA
CCACACCAACGCGAACTCCGACCCATGATGTCCGATGTCTGTAGGACCTT
TCAACGACAAGAGCAACACACTAACTTTGCTGAGGAACGTAGTCGAATGG
AAACCAAAATATCAAGGCAGCATAACAAAACGTGGCACCTGTCGCTGCCG
TGGGGGAAATCTAAATGACACTTTTAAGCTATGATGAGCATGTAACAAAA
ATATCGTGTGATGTTTAATGGTCCGTGCATTGACTGCTTTCACCAACTAA
CGCGGATGGCACCAACCGGACGTCGACGGCAGACATGTCGGAAACGATGC
TGACAGGAGATGAGGAAGTCGACGTCCCGTGGGCAGAAGTGGCTAGGATA
ATCAAGTCCAGAAACCGCATTGCCTGTCGGAAAAAGTGGGACTACCTACA
GGTACGGCAGCTGTGTAGCCATTGTAGCCGCGAAATCACGAGCTAAATGC
GTTGTGTGTGAATCCGAAGATTCTTGATATCGATGTGTTTATGTGCGTAA
CAACCGAGGATATTGACATTATACATTTGTCGAACGCCGCGGCTGATCAT
GACGGCACCTGCGAACACAGAATGTCAGGTGTGCTGCAGAACAACGATTG
GCTTGACTCACAACTTACAAACCGGCTTTTCCTGTGATTGCGTCTACAGT
CTACAGCAGTTGATGTGTTGGCACAGTATAGCCTGGGAGTACTGTAAGTG
ACACACCAGAAACTACCTTCAAAGGAAAATATGGGGGTGGTATTGTAATG
TACTGCTGTATGAATACAGAACGGGCCCGTGGATAAGAAAAATCAAATTC
GGGTGAGAAAGACCAGCCGAAGTCGTCCGATTTCTCAAAACGAATTTCTT
ACTCCTTTTGGGGCTGTCGCATGTTGCTGAATCTATCATTTTCTCATTTC
TGGCGAAGAAAACAACAACAGCCCACCAAGCCTTCATGAGCATGAAACCG
ACAGCTCGGTGTGGCCAACGTTGGGGGTGGGGGTTGTGGCAATACAGCCG
TACAGCAGCAGTGCATAGCGCAGCCCGCGGCGGCGCTAGGGCCCGGGTGG
CGCCGCGACAATAAGAGCTGCATGACCTGAGCGAGGTAGGGGGTGGGAAC
ATGGCAGCAGCAGCAGCAGTGGGACATTTCCTATTGGACATGCTCCCCTT
GCTACTCCCTTGTTTCTCTTTCTTGTGTCTTGGGGGTATCGCATGACAAT
GTCTCTTACTGAAGCGTTTCTTATGTTGTGGCCGAGATTGAGCTGTGTTT
CTTAGCCCTTTTTTCTTATTTTTCGTTAACATTCGAGCTTTTTTTTTCTC
GACAGAGTTTTTCTTAATTGCGGCTTCGTTCTGTGCATGCATTCTGCAAG
GAAATGATCCGGCCACGACAAGAAGTGATGTGATGTTGGCCTTGGTTTCC
ATTGCACGTTTTGGCCAAGCGCAAGTGTGTGTACTATCGATGTTTGTGCC
ACGAGGACGTCGTTTGAGCCTGAGTATGATGCCACAAACACGTGCCACCA
CACACAAGAGCTTTGCTGCATCGTCAAATTGGCGACCCTTTTCATGCCAC
TGGTGCCGATGCCGGGCAGGTTTGGTCTGTTTGGTTCCGCTGGTGTTTCT
GTTGCTGTCGCCTTCACCAAATTTGATATGATGACGGGACGAGAATTGAC
AAAACTCGTAGCTCCACTCAACACGAGCTCGATAGTCTAGGGTAAGCTAC
CGATTGTGGTTGCGGCCGAAATTGAAGGCATCGGTTTTCTTTGTGAGCTC
TTTTGCTTGATATCCACCGTCATAGCTGTGCTTCACAGAATGCTATCAAC
ACATGGTATCAGGTGCCTGACTGCTTCGGTGGTCGGGTATATGTATGCTA
TGACAGATGCAGCGCAGGCAGAAATGGCAGTATGTGCGAGACAAGAGCGG
CAGCGCAGCTAGCGTCAACCTGGCGTTTGTCAAAGCAATCATAGATACCG
GGGCTGCCGACGAGAGCGAGTTGAATTGGAGCAGCTTGCCGTACCCGCGA
GCTAACCTCAAGTGGAAGAACCTGCGAGAGCGGGAGCTGCAGGCTCCAAA
CGCCAACTTGCAGTTCCGAGAGGTACGTCTCAATTATTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19469:525..3214+

>mRNA_Ecto-sp13_S_contig19469.6256.1 ID=mRNA_Ecto-sp13_S_contig19469.6256.1|Name=mRNA_Ecto-sp13_S_contig19469.6256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19469:525..3214+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGACTGAGCAAGAGGAGAAGCTCCTTAACAAGCTCATCATGGACCGGAT
GGAGCGCGGTGAAGACATGTCGGAAACGATGCTGACAGGAGATGAGGAAG
TCGACGTCCCGTGGGCAGAAGTGGCTAGGATAATCAAGTCCAGAAACCGC
ATTGCCTGTCGGAAAAAGTGGGACTACCTACAGATGCAGCGCAGGCAGAA
ATGGCAGTATGTGCGAGACAAGAGCGGCAGCGCAGCTAGCGTCAACCTGG
CGTTTGTCAAAGCAATCATAGATACCGGGGCTGCCGACGAGAGCGAGTTG
AATTGGAGCAGCTTGCCGTACCCGCGAGCTAACCTCAAGTGGAAGAACCT
GCGAGAGCGGGAGCTGCAGGCTCCAAACGCCAACTTGCAGTTCCGAGAGG
TACGTCTCAATTATTAG
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