|
|
Homology
BLAST of mRNA_Ecto-sp13_S_contig1944.6245.1 vs. uniprot
Match: D8LBP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP2_ECTSI) HSP 1 Score: 712 bits (1839), Expect = 1.030e-248 Identity = 455/559 (81.40%), Postives = 469/559 (83.90%), Query Frame = 1
Query: 772 MACMLYLRKKSRKKKAMTTTTHVKDSATGQTGRVAALGETGKMEAPCTAAIAPSKVECSFTPVPPPQSATTAPAPFGSVGETPQPVATMSAGDKAPPARTTGPPSPFSAGMERELDMFVRSRPKDKSSTSSAVVLEAQRRARRRALSMQKRNTAEEERKTGALESAKKPLTVADIEQLKASRRAALARAASQIQKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAVLAYDEAQADERERRVRNETYARIRREERRRELALQRQEDERVEMMRMYEAGERYKGTSPVATMIPAPVPAVHSARSFFSITDSASIAETVVGDHGPGVASSASRRRKSWRRVDPDHIEEVQDAFEGAYSNSEGAQDVRKAELDALKSTHHQPQANQQGSDPAKRTTTTTSPSGGALLELDLASSPTNARRASGSSCAPLLPDEDSSENVTVRRGLRKPPLLSPTRPSFLSRYARSASASATTCVAASAYGSRNRKQGALGRRRISTTPVWKRPAVPLSKPYVPVPQKDTDGRIS 2448
M CMLYLRKK+RKKK MT TTHVKDSATGQTGRVAALGE+GK EAPC AA+APSKVECSFTPVPPPQSAT APAPFGSVGETP+P TMSAGD+APP+RTTGPPSPFSAGMERELD+FV SRPKDKS SSAVVLEAQRRARRRALSMQKR TAEEERK GALESAKKP TVADIE+LKASRRAALARAASQIQKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VAAVLAYDEAQADERERRVRNETYARIRREERRRELALQRQEDERVEMMRMYEAGERYKGTSPVAT++PAPVPAVHSARSFFSITDSASIAETVVGD+GPGVASSASRRRK+WRRVDPDHIEEVQDA EGA SNS GAQDVRKAELDALKSTHHQPQANQQGS PA+ T LPD+DS E VTV R LRKPPLLSPTRPSF SRYARSASASATT VAASAYGSRNRKQGALGRRRISTTPVWKRPAVPLSKPYVPVPQKDT GRIS
Sbjct: 1 MECMLYLRKKARKKKVMTATTHVKDSATGQTGRVAALGESGKEEAPCAAALAPSKVECSFTPVPPPQSATMAPAPFGSVGETPKPAVTMSAGDRAPPSRTTGPPSPFSAGMERELDVFVMSRPKDKSGMSSAVVLEAQRRARRRALSMQKRKTAEEERKAGALESAKKPPTVADIERLKASRRAALARAASQIQKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSIVAAEKKQRERQLGLVRQAEAEAKRERVAAVLAYDEAQADERERRVRNETYARIRREERRRELALQRQEDERVEMMRMYEAGERYKGTSPVATVLPAPVPAVHSARSFFSITDSASIAETVVGDNGPGVASSASRRRKTWRRVDPDHIEEVQDALEGACSNSGGAQDVRKAELDALKSTHHQPQANQQGSTPAQHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDDSGEMVTVSRRLRKPPLLSPTRPSFSSRYARSASASATTGVAASAYGSRNRKQGALGRRRISTTPVWKRPAVPLSKPYVPVPQKDTGGRIS 559
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2451 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_003250.1 |
| Cds size | 2223 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462986.565072-UTR-Ecto-sp13_S_contig1944:1981..2209 | 1681462986.565072-UTR-Ecto-sp13_S_contig1944:1981..2209 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1944 1982..2209 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462986.5748818-CDS-Ecto-sp13_S_contig1944:2209..2296 | 1681462986.5748818-CDS-Ecto-sp13_S_contig1944:2209..2296 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1944 2210..2296 + |
| 1681462986.5848222-CDS-Ecto-sp13_S_contig1944:3124..3745 | 1681462986.5848222-CDS-Ecto-sp13_S_contig1944:3124..3745 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1944 3125..3745 + |
| 1681462986.5954635-CDS-Ecto-sp13_S_contig1944:3948..4275 | 1681462986.5954635-CDS-Ecto-sp13_S_contig1944:3948..4275 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1944 3949..4275 + |
| 1681462986.605557-CDS-Ecto-sp13_S_contig1944:4577..5132 | 1681462986.605557-CDS-Ecto-sp13_S_contig1944:4577..5132 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1944 4578..5132 + |
| 1681462986.6137033-CDS-Ecto-sp13_S_contig1944:5484..6117 | 1681462986.6137033-CDS-Ecto-sp13_S_contig1944:5484..6117 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1944 5485..6117 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1944.6245.1 >prot_Ecto-sp13_S_contig1944.6245.1 ID=prot_Ecto-sp13_S_contig1944.6245.1|Name=mRNA_Ecto-sp13_S_contig1944.6245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=741bp
MQPTQRALGPPSPPPSSSSSPPNAPRRQPHTPLPPGDDDGALELGSLNLI DRARALCAAADDVQKATIEASRRIAAIHGNPDRPPRQKKKNAPVKEPPDV CARLPSDIPPPRGEGWRRLGPVSVVCGSNRISAPPQTNRRALTREVEVCI DGGFYSVVPADLDPGGGFCVSLDRDFAGETNMACMLYLRKKSRKKKAMTT TTHVKDSATGQTGRVAALGETGKMEAPCTAAIAPSKVECSFTPVPPPQSA TTAPAPFGSVGETPQPVATMSAGDKAPPARTTGPPSPFSAGMERELDMFV RSRPKDKSSTSSAVVLEAQRRARRRALSMQKRNTAEEERKTGALESAKKP LTVADIEQLKASRRAALARAASQIQKAKSQKQEAEARSEGERQKKEAEAA RKAHALRSAAAARGSIAAAEKKQRERQLELVRQAEAEAKRERVAAVLAYD EAQADERERRVRNETYARIRREERRRELALQRQEDERVEMMRMYEAGERY KGTSPVATMIPAPVPAVHSARSFFSITDSASIAETVVGDHGPGVASSASR RRKSWRRVDPDHIEEVQDAFEGAYSNSEGAQDVRKAELDALKSTHHQPQA NQQGSDPAKRTTTTTSPSGGALLELDLASSPTNARRASGSSCAPLLPDED SSENVTVRRGLRKPPLLSPTRPSFLSRYARSASASATTCVAASAYGSRNR KQGALGRRRISTTPVWKRPAVPLSKPYVPVPQKDTDGRIS* back to topmRNA from alignment at Ecto-sp13_S_contig1944:1982..6117+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1944.6245.1 ID=mRNA_Ecto-sp13_S_contig1944.6245.1|Name=mRNA_Ecto-sp13_S_contig1944.6245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4136bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1944:1982..6117+ (Ectocarpus species13 EcNAP12_S_4_19m) AACCTATCCAACGAGGGGCATCATAGCCATTACTTGTTGTCTAGACTGCT
CTAGATGCAGAACGAGGAGGCATCGCTCTGCGCTTGAATCACGGCGGCAA
CTCTCTCCGAGACTTGCAGCAGAGTCTAGACTGCACAACATTGGCGCCGG
TGCGCTACGGATGCAACAACCCGCATCCTCAGGGTCTTTTCCGTTAATCG
GCGATGCGGTCCAAATTTGGAGGTGGAAATGCAGCCAACGCAGCGAGCAC
TGGGACCGCCTTCACCTCCTCCGTCGTCCTCCTCGTCTCCTCCCAATGCC
CCGCGGAGACAGCCGGTGGGTACATGCGTTGAGTCCCCTACAACTACTGT
AGATCAAGACTTACAATCATTCGTGCCGCTGTATTCGAGGGGGATGGGGG
GATCGTGCATCATAGGTTGGACTCTGCTGTTTCTCACGCCTTATTCAAAA
TGTCATTGACACATGAGCGTTTGATCAGCGTATTCAGCGGCAATTGTAGC
GGTAGATAAACAGTAGACCGCAGTTTTCTAGCGCTAATATTGAAGGGCCC
GTTATCGGATTGATTATCATTGCCATACGTCTGACCTAAATGTACAAAGA
CTACATAGTCTACGCTTCTCGGGGCGTTTGCCTTCTACTCTAGTACAAAA
AAGCAAGAGCAATACGTGACGACACCCATTGATCGATGTACTTGTTGACA
TTGAGTCCATTGGTAGTGTTGTTGTTGTTGTTGTTGTTGTCGTCGTCGTC
GCGCTTCTCATCCAACGACACACCACATCCTGGTACATGCTTTGTCCAGT
ACCTCCTCTTCCACTTGGTTATTGGTGTGGGACCGCGATATTCGCAATTT
CGGTACATGTAGCTTGTCAGAATGAAAGGGCATCGGGGGAACGGGAATGA
GTACATGTAAGACGATAACTAATCGGCGTCTCATCGCGTTAGCTTATCGA
TGATGAAGTGCACTCTCATCGTGCCGGCACCTACTGCGTGAGACGTCCAC
CGTATCTATCTGGAGGTTTGTTACGTCTCCCCAGGACCACCACATTGCCG
TTGCCTCGCCACGTGGTGTCACCCTACTAGACTGCTCTTGTTCATCTTGC
GACGCCCTCCACTTCACCTCCACCCAATGCTTTTCCTCGACAGCATACCC
CCCTGCCTCCGGGCGATGACGATGGAGCGCTGGAGCTAGGTAGTCTAAAT
CTCATAGACAGGGCTCGCGCTCTGTGCGCGGCCGCGGACGACGTACAAAA
AGCCACGATCGAGGCCAGCCGCCGCATAGCCGCCATTCACGGAAACCCAG
ACCGACCTCCAAGGCAAAAAAAAAAAAACGCTCCGGTCAAAGAGCCGCCA
GACGTCTGCGCACGACTGCCTTCGGACATCCCACCGCCGCGAGGAGAAGG
GTGGCGGCGCCTGGGGCCCGTGTCCGTGGTCTGTGGGTCAAACCGAATAT
CCGCACCACCTCAGACTAATCGCCGGGCCCTGACGCGAGAGGTTGAGGTG
TGTATCGATGGCGGCTTCTACAGCGTTGTTCCGGCCGACCTAGACCCGGG
GGGGGGCTTTTGCGTGTCCCTCGATCGCGATTTCGCCGGCGAGACAAACA
TGGCGTGCATGTTGTACCTTCGAAAGAAGTCGCGAAAGAAAAAGGCCATG
ACTACTACTACGCATGTGAAGGATAGCGCTACTGGACAGACCGGCAGAGT
CGCTGCACTAGGTGAAACTGGAAAAATGGAAGCGCCGTGTACTGCGGCGA
TAGCACCGAGTAAGGTACGTGTGGATCGAAATGAAGATGACGAGACGCCG
AAATAATTCGGTAGCAATTCCTTTCACGACGTGGATAGCTGTCATCATCA
TCACTCTCTCCGTGTAGTCCTACGCAAAAACGAAGCCCATCGGACACAAA
CCGGTGTGTATGTTGACACACGCTGCACTCACATCACTATTCGGTTATCT
CTCTCTCGGCGCCACAGGTAGAATGTTCGTTCACTCCCGTGCCTCCTCCG
CAGAGCGCGACAACGGCTCCGGCTCCGTTCGGGTCCGTTGGAGAAACGCC
ACAGCCAGTCGCGACGATGTCGGCTGGAGATAAGGCGCCACCAGCGAGAA
CAACAGGGCCACCGAGCCCGTTTTCCGCCGGCATGGAGCGAGAGCTGGAC
ATGTTTGTCAGGTCGCGACCCAAGGACAAAAGCAGCACGAGTTCTGCCGT
CGTGCTCGAAGCGCAGAGACGCGCCCGGCGCAGAGCCCTGTCGATGCAAA
AGAGAAATACCGCCGAGGAGGAACGAAAAACGGGAGCCCTAGAGGTATAA
ACGAGTTACGCCACCCAAGTGCCGTGGCCTTGCGCTCTTTGCCCGTAGTG
GAACAACACCGTCACACAAGCTTTGCGATTGCGGCTACTTGATTGGGAGA
ACCGCAGAAACGTAACCCAGATCCACAGGGAGACAGGTTCCTCGCAATCA
CTTGTCGTTTGACCAGCATGTATGTGTGCACAACGACTGTATTTGTGAGG
TGAAACTGAGTTGTAGAGGACCGCTGCTCTTACACAACGTCATTCCACCG
TCGTTCTTGAATTGCGCTCCTGGTGGCTTCCCTTGTGGCATCCAAGTCGG
CGAAGAAACCCCTAACCGTGGCCGACATCGAACAGCTTAAGGCGTCCCGC
CGCGCGGCGCTGGCCAGAGCAGCCTCCCAGATACAAAAGGCGAAGAGCCA
GAAACAGGAGGCCGAGGCAAGGTCCGAAGGAGAGAGACAGAAGAAGGAGG
CCGAAGCGGCACGAAAGGCACATGCCTTGAGGTCAGCCGCTGCAGCCCGG
GGCAGCATAGCGGCCGCCGAAAAGAAACAGCGGGAGCGACAGCTGGAGCT
AGTGCGGCAGGCTGAAGCCGAGGCCAAGCGGGAGAGAGTCGCGGCAGTCC
TCGCGTACGACGAGGCCCAAGCCGACGAGCGAGAGAGGCGCGTGCGAAAC
GAAACGTACGCGAGGATACGCCGGGAAGAGCGGCGGCGAGAGTTGGCCCT
ACAGCGGCAGGAAGACGAGAGGGTCGAGATGATGCGGATGTACGAGGCCG
GGGAGAGATACAAAGGCACCAGTCCTGTGGCCACGATGATCCCCGCTCCT
GTCCCCGCAGTGCACTCCGCTCGGTCGTTTTTTAGCATCACGGACTCGGC
GGTGAGTGAGTGCTTTGAGGCCTCGAAGCAGCCGTGGCGTTGTGAAAACA
ATCGCAGGACGCTGAACGTCTCCAGAGTATCTTTTTGTGAGAATCTGGCA
TCACGGTCCTCACATGCTATGTGCGTACAAAGTTGCCGCTACGGTATTCC
GTGCATCCTTCAAACGCTCGCATGCTCAACGTCTGACGTTTAGGCTTTCT
GGCGGTACACCAGTTACTATTTTCAAGTAAAATAGCATGATTTACGGACG
CGCGTCCTCTGTGTGTCTGTATCTTTCAACGAGTGTATTGCCTCGACTGT
ACATATCCCCGCCGTGCTTGACAAAAGTCCCTTGAACGAACCCCTACCAG
CAGTCAATTGCTGAGACCGTTGTTGGAGACCACGGCCCAGGGGTCGCATC
TTCCGCGTCTAGACGAAGAAAAAGCTGGCGGCGAGTAGACCCCGACCACA
TCGAAGAAGTCCAAGACGCGTTCGAGGGTGCATATAGCAACAGCGAAGGT
GCCCAGGACGTGCGAAAGGCCGAGCTCGACGCCTTGAAATCAACCCATCA
CCAGCCGCAAGCGAACCAACAGGGGTCCGACCCCGCCAAGCGCACCACTA
CCACCACCTCTCCGAGCGGCGGTGCTTTGTTGGAGCTAGACCTAGCGTCA
TCGCCGACAAACGCAAGACGTGCCTCCGGGTCCTCCTGTGCCCCACTGCT
ACCAGACGAAGACAGCAGTGAAAATGTCACCGTCAGGCGTGGGCTAAGAA
AGCCTCCCCTCTTGTCGCCGACCCGACCATCGTTCTTGTCGAGATATGCG
AGAAGCGCAAGCGCGTCGGCCACTACCTGCGTGGCGGCATCTGCTTACGG
CAGCAGAAATAGAAAACAAGGAGCTCTGGGAAGGAGAAGGATAAGCACAA
CGCCTGTGTGGAAGCGGCCGGCGGTGCCGCTGAGCAAGCCGTACGTTCCC
GTGCCGCAGAAGGACACCGACGGCCGTATTTCTTGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1944:1982..6117+ >mRNA_Ecto-sp13_S_contig1944.6245.1 ID=mRNA_Ecto-sp13_S_contig1944.6245.1|Name=mRNA_Ecto-sp13_S_contig1944.6245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2223bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1944:1982..6117+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGCAGCCAACGCAGCGAGCACTGGGACCGCCTTCACCTCCTCCGTCGTC CTCCTCGTCTCCTCCCAATGCCCCGCGGAGACAGCCGCATACCCCCCTGC CTCCGGGCGATGACGATGGAGCGCTGGAGCTAGGTAGTCTAAATCTCATA GACAGGGCTCGCGCTCTGTGCGCGGCCGCGGACGACGTACAAAAAGCCAC GATCGAGGCCAGCCGCCGCATAGCCGCCATTCACGGAAACCCAGACCGAC CTCCAAGGCAAAAAAAAAAAAACGCTCCGGTCAAAGAGCCGCCAGACGTC TGCGCACGACTGCCTTCGGACATCCCACCGCCGCGAGGAGAAGGGTGGCG GCGCCTGGGGCCCGTGTCCGTGGTCTGTGGGTCAAACCGAATATCCGCAC CACCTCAGACTAATCGCCGGGCCCTGACGCGAGAGGTTGAGGTGTGTATC GATGGCGGCTTCTACAGCGTTGTTCCGGCCGACCTAGACCCGGGGGGGGG CTTTTGCGTGTCCCTCGATCGCGATTTCGCCGGCGAGACAAACATGGCGT GCATGTTGTACCTTCGAAAGAAGTCGCGAAAGAAAAAGGCCATGACTACT ACTACGCATGTGAAGGATAGCGCTACTGGACAGACCGGCAGAGTCGCTGC ACTAGGTGAAACTGGAAAAATGGAAGCGCCGTGTACTGCGGCGATAGCAC CGAGTAAGGTAGAATGTTCGTTCACTCCCGTGCCTCCTCCGCAGAGCGCG ACAACGGCTCCGGCTCCGTTCGGGTCCGTTGGAGAAACGCCACAGCCAGT CGCGACGATGTCGGCTGGAGATAAGGCGCCACCAGCGAGAACAACAGGGC CACCGAGCCCGTTTTCCGCCGGCATGGAGCGAGAGCTGGACATGTTTGTC AGGTCGCGACCCAAGGACAAAAGCAGCACGAGTTCTGCCGTCGTGCTCGA AGCGCAGAGACGCGCCCGGCGCAGAGCCCTGTCGATGCAAAAGAGAAATA CCGCCGAGGAGGAACGAAAAACGGGAGCCCTAGAGTCGGCGAAGAAACCC CTAACCGTGGCCGACATCGAACAGCTTAAGGCGTCCCGCCGCGCGGCGCT GGCCAGAGCAGCCTCCCAGATACAAAAGGCGAAGAGCCAGAAACAGGAGG CCGAGGCAAGGTCCGAAGGAGAGAGACAGAAGAAGGAGGCCGAAGCGGCA CGAAAGGCACATGCCTTGAGGTCAGCCGCTGCAGCCCGGGGCAGCATAGC GGCCGCCGAAAAGAAACAGCGGGAGCGACAGCTGGAGCTAGTGCGGCAGG CTGAAGCCGAGGCCAAGCGGGAGAGAGTCGCGGCAGTCCTCGCGTACGAC GAGGCCCAAGCCGACGAGCGAGAGAGGCGCGTGCGAAACGAAACGTACGC GAGGATACGCCGGGAAGAGCGGCGGCGAGAGTTGGCCCTACAGCGGCAGG AAGACGAGAGGGTCGAGATGATGCGGATGTACGAGGCCGGGGAGAGATAC AAAGGCACCAGTCCTGTGGCCACGATGATCCCCGCTCCTGTCCCCGCAGT GCACTCCGCTCGGTCGTTTTTTAGCATCACGGACTCGGCGTCAATTGCTG AGACCGTTGTTGGAGACCACGGCCCAGGGGTCGCATCTTCCGCGTCTAGA CGAAGAAAAAGCTGGCGGCGAGTAGACCCCGACCACATCGAAGAAGTCCA AGACGCGTTCGAGGGTGCATATAGCAACAGCGAAGGTGCCCAGGACGTGC GAAAGGCCGAGCTCGACGCCTTGAAATCAACCCATCACCAGCCGCAAGCG AACCAACAGGGGTCCGACCCCGCCAAGCGCACCACTACCACCACCTCTCC GAGCGGCGGTGCTTTGTTGGAGCTAGACCTAGCGTCATCGCCGACAAACG CAAGACGTGCCTCCGGGTCCTCCTGTGCCCCACTGCTACCAGACGAAGAC AGCAGTGAAAATGTCACCGTCAGGCGTGGGCTAAGAAAGCCTCCCCTCTT GTCGCCGACCCGACCATCGTTCTTGTCGAGATATGCGAGAAGCGCAAGCG CGTCGGCCACTACCTGCGTGGCGGCATCTGCTTACGGCAGCAGAAATAGA AAACAAGGAGCTCTGGGAAGGAGAAGGATAAGCACAACGCCTGTGTGGAA GCGGCCGGCGGTGCCGCTGAGCAAGCCGTACGTTCCCGTGCCGCAGAAGG ACACCGACGGCCGTATTTCTTGA back to top
|