mRNA_Ecto-sp13_S_contig194.6222.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig194.6222.1
Unique NamemRNA_Ecto-sp13_S_contig194.6222.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig194.6222.1 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 1.140e-116
Identity = 278/376 (73.94%), Postives = 280/376 (74.47%), Query Frame = 3 
Query:  168 MVEIMDRGREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQNPEGPGPAGTTGXXXXXXXXXXXXXXXXXXXXDGGGVAHVDTEGGAVPLEGAGAGXXXXXXXXGSWESPLKREFDGPVNGALPNGSYRDSATAALSGGDPRVAAVSIASSPSSLXXXXXXXXXXXXXXGGASMRLQSLADLATQELQTMGDVDETDTAGTHGHRGDHXXXXXXXXXXXXXXXXXXXXXXAGFSPKRHISPRLSGGGXXXXXXXXXXXXXXXXXXXXXFSA---------PLPPARAAPGHHXHLRERGVPRSRHERAEXXXXXXXXXXXXXRADGGRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELE 1268
            MVEIMDRGREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQ PEGPGPAGTTGXXXXXXXXXXXXXXXXXX             GGAVP EGA   XXXXXXXX S ES LKREF G VNGALPN SYRDSA AAL GGDPR AAVSIASSPSS               G ASMRLQSLADLATQELQTMGDVDETDT G HGHR                         AGFSPKRH+SPRLSGGG XXXXXXXXXXXXXXXX     SA         PLPPARAAP   X LRERGVPRSRHER  XXXXXXXXX    RA+GGRG RHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELE
Sbjct:    1 MVEIMDRGREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQKPEGPGPAGTTGXXXXXXXXXXXXXXXXXX-------------GGAVPPEGAXXXXXXXXXXXXSGESALKREFGGTVNGALPNASYRDSAAAALPGGDPREAAVSIASSPSSFSLSTSPRPRSASSGGVASMRLQSLADLATQELQTMGDVDETDTPGIHGHRRHQQHQRSLSNGNSQSSSARTPPLPAGFSPKRHLSPRLSGGGGXXXXXXXXXXXXXXXXVSALSSAAXXXXXCSAPLPPARAAPXXXXXLRERGVPRSRHERXXXXXXXXXXXHAAARAEGGRGMRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELE 363
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BLAST of mRNA_Ecto-sp13_S_contig194.6222.1 vs. uniprot
Match: D8LD77_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 1.570e-107
Identity = 308/375 (82.13%), Postives = 310/375 (82.67%), Query Frame = 3 
Query:  168 MVEIMDRGREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQNPEGPGPAGTTGXXXXXXXXXXXXXXXXXXXXDGGG-VAHVDTEGGAVPLEGAGAGXXXXXXXXGSWESPLKREFDGPVNGALPNGSYRDSATAALSGGDPRVAAVSIASSPSSLXXXXXXXXXXXXXX----GGASMRLQSLADLATQELQTMGDVDETDTAGTHGHRGDHXXXXXXXXXXXXXXXXXXXXXXAGFSPKRHISPRLSGGGXXXXXXXXXXXXXXXXXXXXXFSAPLPPARAAPGHHXHLRERGVPRSRHERAEXXXXXXXXXXXXXRADGGRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELEVTL 1277
            MVEIMD  REVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQNPEGPGPAGTTGXXXXXXXXXXXXXXXXXXXX     VAHV TEGG VP EGAG  XXXXXXXX S ES LKREF G +NGALPN SYRDSA AALSGGDPR A VS ASSPS  XXXXXXXXXXXXXX    GGASMRLQSLADLATQELQTM DVDETDTAG HG     XXXXXXXXXXXXXXXX      AGFSPKRH+SPRLSGG XXXXXXXXXXXXXXXXXXXXX                 LRERGVPRSRHERAEXXXXXXXXXXXXX     RGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELEV L
Sbjct:    1 MVEIMDSRREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQNPEGPGPAGTTGXXXXXXXXXXXXXXXXXXXXXXXXXVAHVGTEGGTVPSEGAGXXXXXXXXXXXSGESALKREFGGMLNGALPNTSYRDSAAAALSGGDPRAATVSTASSPSXXXXXXXXXXXXXXXXXXIGGGASMRLQSLADLATQELQTMCDVDETDTAGAHGXXXXXXXXXXXXXXXXXXXXXRTPPAPAGFSPKRHLSPRLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----LRERGVPRSRHERAEXXXXXXXXXXXXXXXXXXRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELEVCL 371
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig194.6222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K330_9PHAE1.140e-11673.94CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LD77_ECTSI1.570e-10782.13CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig194contigEcto-sp13_S_contig194:23721..27664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score342.4
Seed ortholog evalue2.7e-91
Seed eggNOG ortholog2880.D8LD77
Model size1316
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.CCT motif
EggNOG OGs2E1UC@1,2S94C@2759
Ec32 ortholog descriptionCCT domain protein
Ec32 orthologEc-05_001470.1
Cds size1149
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig194.6222.1prot_Ecto-sp13_S_contig194.6222.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig194 23888..27664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462984.747317-UTR-Ecto-sp13_S_contig194:23720..238871681462984.747317-UTR-Ecto-sp13_S_contig194:23720..23887Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig194 23721..23887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462984.7611675-CDS-Ecto-sp13_S_contig194:23887..239491681462984.7611675-CDS-Ecto-sp13_S_contig194:23887..23949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 23888..23949 +
1681462984.7719376-CDS-Ecto-sp13_S_contig194:24373..244551681462984.7719376-CDS-Ecto-sp13_S_contig194:24373..24455Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 24374..24455 +
1681462984.7824035-CDS-Ecto-sp13_S_contig194:25369..255791681462984.7824035-CDS-Ecto-sp13_S_contig194:25369..25579Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 25370..25579 +
1681462984.7923365-CDS-Ecto-sp13_S_contig194:26055..262681681462984.7923365-CDS-Ecto-sp13_S_contig194:26055..26268Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 26056..26268 +
1681462984.8023424-CDS-Ecto-sp13_S_contig194:26704..271661681462984.8023424-CDS-Ecto-sp13_S_contig194:26704..27166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 26705..27166 +
1681462984.8122306-CDS-Ecto-sp13_S_contig194:27544..276641681462984.8122306-CDS-Ecto-sp13_S_contig194:27544..27664Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig194 27545..27664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig194.6222.1

>prot_Ecto-sp13_S_contig194.6222.1 ID=prot_Ecto-sp13_S_contig194.6222.1|Name=mRNA_Ecto-sp13_S_contig194.6222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=383bp
MVEIMDRGREVEWSPDMELEGDDAEKAAALLLAVAPRNRSFDATQNPEGP
GPAGTTGGGGGGGGGSGPVNAPPAPPPDGGGVAHVDTEGGAVPLEGAGAG
AAGGAAGGGSWESPLKREFDGPVNGALPNGSYRDSATAALSGGDPRVAAV
SIASSPSSLSLSTSPRPRSASSGGGASMRLQSLADLATQELQTMGDVDET
DTAGTHGHRGDHHHHRSLSNGNSQSSSARTPPPPAGFSPKRHISPRLSGG
GGGGRGGRGVSALSSAAAAVASFSAPLPPARAAPGHHHHLRERGVPRSRH
ERAEEEEEEEEEMRAAARADGGRGRRHRPRSVSMPEGMELQARAWSGGYS
SGRRKSGRIDSIKEELEVTLCLHLAFAAAAAAA
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mRNA from alignment at Ecto-sp13_S_contig194:23721..27664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig194.6222.1 ID=mRNA_Ecto-sp13_S_contig194.6222.1|Name=mRNA_Ecto-sp13_S_contig194.6222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3944bp|location=Sequence derived from alignment at Ecto-sp13_S_contig194:23721..27664+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCTGACTTGGTTCAGGGGTGGGGTTGGTTCCCTCGGCGGAAGAGGCG
TTGCCGACTGTGCGGCGTTGCGTGGAGGGGGATCGATTGTGGTTGTGTTG
GCGAGGGCTATTGGCGACGCAGGGAGGGATCGGTTAGCGTTGGCGAGGGC
TCTCGACGACGCGGAGCATGGTTGAGATCATGGACAGGGGGAGGGAGGTC
GAGTGGAGTCCCGACATGGAGCTGGAGGGGTGAGAAGGAGCGAGGGAGAG
AGTCGAGGGGATGAGGGATGGAAAGTTGGATATTGGTCGCTAAAAGTCTG
GTGGACAACAGAGACAGGGAAGGAGAGGAGAGAAACAGAGACAAGCAGAA
AAGGACATGGACGAGGAGCCTTGGCCGAACAAATGAGAGGCAGAGCACAG
GAAGAGTGTCTCCCGCGACCAGACCAGGCATCTATCCAGCTGTCTCTGTT
TTGTCACCTCCCATATTTCGTTACATGCAAACATGTGCGCGGACTCTAGT
CTTCGTCTGCACGCCACCCTCCTCCTCCTCCTCCTCCTCGACATTTCGCG
AGGCACTAGCTCGGTAGTCCTTACGGCACTCTTGCGGCCGGTCAACACGT
CCGTTTACGTGTGTCTGATTTTTAACGAATGTTGGCTGGTGCTGCCGCGA
CAGGGATGACGCGGAGAAGGCTGCCGCCCTCTTGCTGGCGGTGGCGCCCC
GAAACCGCTCCTTCGACGCGACACAGAACCCCGAGGTATGTATGTCTACA
GCAGTACCCGTCGCCCCCTGCAGCACCGGGATACACTGGGGGACCCTCTA
AAGTGCCGGGGTGCGTCCCGAGAATTTAACGTCACGTTACTGGCACCGGC
ACTATTCAGAATACAAAACGACTGGGTATTCCAGCGTGTGCGAGCCGAAA
ACACCGGCACTATAGAGGGCCCCCCACTGCATATCCATCACCCCCTGTCG
TACCAATACGGCAGTCGTGTGTTTACGACAGAGGACATCCGTGGTGAGAG
AGAGAAGTTGTTTGCGTGGGGACGGGTGGAGGACGGCAGAAGTGGTCCCT
TCCAAGCAGCGCAATGATTGCCATCGCTCTTAGGGGAGTAACCTTTTGCA
GCACCATTCTTCAAGCCGTTGACCAATATCCTCCCCCCCCCTATGCTCCG
GCGAGAAGTGATATCGGTAGGATAGATCCTATGGAAGACATGTTTGAGCC
ACCTTTGGCGCGAAGTAGGAAGAAACGATTAGCCATCGGTGATCGGTCCT
GTGGGAACAATGCTCCGTTCTCTCTCGAGGATGCGCGGTCAAGGGTCTCA
CCGCTAAGGCATGCAAAACGTAAGAGTACGCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCGCCCGCCCCCCCCCCCCCCCCCCGCGCGTGT
CGGTCGGGGGGGCNNNNNNNNNNCGAAGAGGCGGGGGCAAGGGCCTCCCC
GCTAAGAGAAACAAAAAAAAAAAAAACCCCCCCCCCCCCCCCCCCCTTGC
TCGGGTGAGAACCCGGCTTGCTCGGTCCCGACGTTGTAGGGATGCGGAAT
CAGTGGTCTAATGACTAAACGGCATGCACGACTACTTTGAGTACACACAC
ACACCCACGCGCGTATTTTTCCTCCTCCGCGCCGCTGCACACCCTCCAGG
GGCCCGGACCCGCGGGCACGACCGGTGGCGGCGGCGGCGGCGGCGGCGGC
AGCGGCCCCGTGAACGCGCCGCCCGCGCCACCCCCTGACGGCGGAGGCGT
TGCTCACGTCGACACGGAAGGCGGAGCGGTTCCGTTGGAGGGAGCCGGTG
CCGGAGCCGCGGGGGGGGCTGCCGGAGGGGGCTCCTGGGAATCGCCCCTG
AAGCGCGAGGTACGTCGAGTCTGTTTTGTTTTTTTTGCATGTACTTGTTG
GTGAGAAGATGACTTGATGCCTGCTTGTGAGAGTTGTTGTTGTGGCTGTG
GTGGGTATAAACGCGTCTCATCCGGATGTGTGTCCATTGTTGTGTGTTAG
ACCCACGCTGCCGTGCGGTTGTTGGCGCAGAGGAGGGGTGCGGTATTGTA
TCTTTTGGTGGTTTTCCGCCTGCTCCCCTGTGCCCTGTAAGCCCCAACCC
CCGCCTGTCCATCATTTTTTCATTTGTGGAATTTAACCGCATCCTTAACC
TCGTCAAAAGTAGATGTATTGTGTGTTTCTTCGTCACAACGAAAACCGCA
CAGGATATTGCGCCAAGTCACATCCACGTGCTCCTGTCCCGCAGCGAGCG
ATATGTCGTCAACTTTTTTTGCTCACTTGCAATTTTTCACCACTGACTGC
TGTTGTGTTCGTTTACGGGCCTCTGTTTTTGTCAGTTCGACGGGCCGGTG
AACGGAGCGCTGCCGAACGGGTCGTATCGCGACTCCGCTACCGCCGCTCT
GTCCGGCGGGGACCCAAGGGTGGCGGCAGTATCGATCGCCTCGTCGCCGT
CGTCGTTATCGTTGTCAACATCCCCTCGCCCCCGAAGCGCCTCCAGCGGC
GGGGGGGCGAGCATGCGGCTGCAGTCGCTCGCGGACCTCGCGACTCAGGT
GTTTATTTTTTCAGTTGCATTTCTGCTGCTGCTGCTGCTGTTGGTTGTTG
TCCCCGGGATAGATGTGGTGGGCGTGGTTGGCATAAGCGGTATGCGTTGT
CCCGCTGCTGATGTGCGGAGAGTCTACTGGCGAATCTTGGATGGAAAAGA
GAGCACCTCGCTACAGGATCGATACACTCCACTCCAGCGGGTGGTGGCTA
TTCTCCAGGGTATACAGCAGTAGTGAGTGTTCATCCTTTTTTATGTTGTA
CCTCTACTGTCATGCCAAGCCTCACTGGCAAACCCTGTTTTTTTTTTTTT
TCTTTACTCTCGCGACACAGGTGTAAGTCTTTTTGCTGTTTTTCCCCGGA
GGGGCTGCTGCTGCTGCTGTACCACAACCGAAATGCCCTGCCGTTACACC
CTGCTCCCCCGCCTTCCCTCCATCCGCCCGCCAGGAACTCCAAACCATGG
GCGATGTCGACGAGACCGACACGGCGGGCACCCACGGCCACCGCGGCGAC
CACCACCACCACCGCAGCCTCAGCAACGGCAACAGCCAGTCATCGTCCGC
TCGAACCCCTCCCCCACCCGCGGGCTTTTCTCCGAAACGGCACATATCTC
CCCGCCTTTCTGGCGGCGGCGGCGGCGGCAGAGGCGGCAGAGGCGTTTCT
GCCCTGTCGTCTGCAGCGGCGGCTGTGGCATCGTTCTCGGCGCCGTTGCC
GCCGGCGCGCGCCGCCCCCGGTCACCACCACCACCTGCGGGAGAGAGGGG
TACCCCGCTCCCGCCACGAGCGGGCGGAGGAGGAGGAGGAAGAGGAGGAG
GAGATGCGCGCCGCCGCCCGGGCAGACGGCGGGCGGGGGAGGCGGCACCG
CCCCCGGTCGGTGTCGATGCCGGAGGGGATGGAGCTCCAGGCCAGGGTGA
GTTTTTTTGTTGGTTTTTTTGTCTCGCGCAAACAGTGTGGTGCAATCAAC
GTGCTTTAGTATTTTCAAGTGAATTTTGATGTGCTGAAGTTTGCATTAGG
ACGTTGATTGCACGGTAGCAGGCACAGGGGTGTCCTGAAGAGCAGGGAGG
GGAGCAGTTGGGGTTGTGGGGGTTGGGGATCCGTTTGTCGATCCGTCTGC
CTCTGCTGGATGGTTTTTTTGTTGGCTGAGGCTGTGGCTACCGCTGTTGA
GCCGCGGATTACTCTGTAGCTCGGTGCGAATCACATGTGGAAAAGTCCCC
CTCCTCACGCTCCACCATATCTCCTTATGCCTACTCTTTGCCGCTGCGGT
GTTTGTTCGTGGGACGACGGACAGGCGTGGTCAGGCGGCTACTCGTCCGG
CAGGAGGAAGAGTGGCCGGATCGACTCCATCAAGGAGGAGCTCGAGGTAA
CCCTTTGTCTTCACCTTGCATTTGCCGCCGCCGCTGCTGCTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig194:23721..27664+

>mRNA_Ecto-sp13_S_contig194.6222.1 ID=mRNA_Ecto-sp13_S_contig194.6222.1|Name=mRNA_Ecto-sp13_S_contig194.6222.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig194:23721..27664+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGAGATCATGGACAGGGGGAGGGAGGTCGAGTGGAGTCCCGACAT
GGAGCTGGAGGGGGATGACGCGGAGAAGGCTGCCGCCCTCTTGCTGGCGG
TGGCGCCCCGAAACCGCTCCTTCGACGCGACACAGAACCCCGAGGGGCCC
GGACCCGCGGGCACGACCGGTGGCGGCGGCGGCGGCGGCGGCGGCAGCGG
CCCCGTGAACGCGCCGCCCGCGCCACCCCCTGACGGCGGAGGCGTTGCTC
ACGTCGACACGGAAGGCGGAGCGGTTCCGTTGGAGGGAGCCGGTGCCGGA
GCCGCGGGGGGGGCTGCCGGAGGGGGCTCCTGGGAATCGCCCCTGAAGCG
CGAGTTCGACGGGCCGGTGAACGGAGCGCTGCCGAACGGGTCGTATCGCG
ACTCCGCTACCGCCGCTCTGTCCGGCGGGGACCCAAGGGTGGCGGCAGTA
TCGATCGCCTCGTCGCCGTCGTCGTTATCGTTGTCAACATCCCCTCGCCC
CCGAAGCGCCTCCAGCGGCGGGGGGGCGAGCATGCGGCTGCAGTCGCTCG
CGGACCTCGCGACTCAGGAACTCCAAACCATGGGCGATGTCGACGAGACC
GACACGGCGGGCACCCACGGCCACCGCGGCGACCACCACCACCACCGCAG
CCTCAGCAACGGCAACAGCCAGTCATCGTCCGCTCGAACCCCTCCCCCAC
CCGCGGGCTTTTCTCCGAAACGGCACATATCTCCCCGCCTTTCTGGCGGC
GGCGGCGGCGGCAGAGGCGGCAGAGGCGTTTCTGCCCTGTCGTCTGCAGC
GGCGGCTGTGGCATCGTTCTCGGCGCCGTTGCCGCCGGCGCGCGCCGCCC
CCGGTCACCACCACCACCTGCGGGAGAGAGGGGTACCCCGCTCCCGCCAC
GAGCGGGCGGAGGAGGAGGAGGAAGAGGAGGAGGAGATGCGCGCCGCCGC
CCGGGCAGACGGCGGGCGGGGGAGGCGGCACCGCCCCCGGTCGGTGTCGA
TGCCGGAGGGGATGGAGCTCCAGGCCAGGGCGTGGTCAGGCGGCTACTCG
TCCGGCAGGAGGAAGAGTGGCCGGATCGACTCCATCAAGGAGGAGCTCGA
GGTAACCCTTTGTCTTCACCTTGCATTTGCCGCCGCCGCTGCTGCTGCG
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