mRNA_Ecto-sp13_S_contig19169.6120.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19169.6120.1
Unique NamemRNA_Ecto-sp13_S_contig19169.6120.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19169.6120.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 6.420e-98
Identity = 169/172 (98.26%), Postives = 169/172 (98.26%), Query Frame = 1 
Query:   28 GRPVVPPVFQQAMDAGAAAGXXXXXXXXEGWIARGATAEQLSLWGVQPPPGLARQYATRHGERGGGMNMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLLLRHVRAPGSTGSG 543
            GRP V PVFQQ MDAGAAAGXXXXXXXXEGWIARGATAEQLSLWGVQPPPGLARQYATRHGERGGGMNMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLLLRHVRAPGSTGSG
Sbjct:   95 GRPGVHPVFQQTMDAGAAAGXXXXXXXXEGWIARGATAEQLSLWGVQPPPGLARQYATRHGERGGGMNMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLLLRHVRAPGSTGSG 266
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19169.6120.1 vs. uniprot
Match: A0A6H5L6M1_9PHAE (UBA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M1_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 4.870e-97
Identity = 159/175 (90.86%), Postives = 162/175 (92.57%), Query Frame = 1 
Query:   19 RAGGRPVVPPVFQQAMDAGAAAGXXXXXXXXEGWIARGATAEQLSLWGVQPPPGLARQYATRHGERGGGMNMMTMNDFMESDAALNQMLRSVTPQGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLLLRHVRAPGSTGSG 543
            RAGGRP VPPVFQQAMDAGA           EGWIARGATAEQLS+WGVQPPPGLARQYATRHGERGGGMNMMTMNDFMESD+ALNQMLRS+TPQGAGGAGAPPLVRVVRGTGG DTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLLLRHVRAPGSTGSG
Sbjct: 2141 RAGGRPGVPPVFQQAMDAGAXXXIGLGGGGGEGWIARGATAEQLSMWGVQPPPGLARQYATRHGERGGGMNMMTMNDFMESDSALNQMLRSLTPQGAGGAGAPPLVRVVRGTGGGDTGWTEMIAHDLHAAAPGPSHNTTRLFPDGPSAATQAHAAPVVHPLLLRHVRAPGSTGSG 2315
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19169.6120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3W3_ECTSI6.420e-9898.26HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L6M1_9PHAE4.870e-9790.86UBA domain-containing protein (Fragment) n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19169contigEcto-sp13_S_contig19169:39..2532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score319.3
Seed ortholog evalue1.3e-84
Seed eggNOG ortholog2880.D7G3W3
Preferred nameUPL1
Model size599
KEGG koko:K10592
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Exons4
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
Ec32 ortholog descriptionDomain of unknown function DUF4414
Ec32 orthologEc-00_007160.3
EC2.3.2.26
Cds size597
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.2742312-CDS-Ecto-sp13_S_contig19169:38..2661681462976.2742312-CDS-Ecto-sp13_S_contig19169:38..266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19169 39..266 +
1681462976.3427455-CDS-Ecto-sp13_S_contig19169:1026..11791681462976.3427455-CDS-Ecto-sp13_S_contig19169:1026..1179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19169 1027..1179 +
1681462976.3525958-CDS-Ecto-sp13_S_contig19169:1828..18841681462976.3525958-CDS-Ecto-sp13_S_contig19169:1828..1884Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19169 1829..1884 +
1681462976.3647943-CDS-Ecto-sp13_S_contig19169:2372..25321681462976.3647943-CDS-Ecto-sp13_S_contig19169:2372..2532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19169 2373..2532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19169.6120.1prot_Ecto-sp13_S_contig19169.6120.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19169 39..2532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19169.6120.1

>prot_Ecto-sp13_S_contig19169.6120.1 ID=prot_Ecto-sp13_S_contig19169.6120.1|Name=mRNA_Ecto-sp13_S_contig19169.6120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
AAAAAGRAGGRPVVPPVFQQAMDAGAAAGIGLGGGGGEGWIARGATAEQL
SLWGVQPPPGLARQYATRHGERGGGMNMMTMNDFMESDAALNQMLRSVTP
QGAGGAGAPPLVRVVRGTGGADTGWTEMIAHDLHAAAPGPSHNTTRLFPD
GPSAATQAHAAPVVHPLLLRHVRAPGSTGSGSRSSGRGGRGSRGGGGNG
back to top

mRNA from alignment at Ecto-sp13_S_contig19169:39..2532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19169.6120.1 ID=mRNA_Ecto-sp13_S_contig19169.6120.1|Name=mRNA_Ecto-sp13_S_contig19169.6120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2494bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19169:39..2532+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCTGCCGCGGCCGGCCGCGCCGGGGGGCGCCCCGTGGTCCCGCCGGT
GTTCCAGCAAGCCATGGACGCCGGCGCTGCGGCTGGCATCGGGTTGGGAG
GGGGCGGCGGGGAAGGGTGGATTGCTCGAGGGGCTACGGCGGAGCAGCTG
TCTCTGTGGGGGGTGCAGCCGCCGCCGGGCCTGGCGAGACAGTACGCGAC
GCGGCACGGGGAGCGTGGGGGAGGAATGGTGGGTCTTTTTTTTTTTTTTG
GCGAGCGTTTGCCGGTTTCGTAATTTTGTTTCAAGGGGAGCGCGGAGAGG
GGACGGTAGGTTTGTTTGTGTTGTGTTGTATTATTTTGGTCGAGCTTTGG
GAGGTTGTTTGTGTGTTGCCTGCAACGCGACCGCGCTAACCGGCTGACCA
ATGAAAATGTTGTCGAGTCTCAGGGCGTGTGCGTGGCCTGTGCGTGCTTT
GTTTGTTTGGCTGTTCGCGTGGGTTTCCGAAATCTCATTACATGTTCTTG
GTCGTGGTTTGATCATTTGGTTCTGTTTCCACCAGTTGAACACAGCTTAA
GGAAATTGGTTGTTGCTGTTGTTGGGTCACCGTCGCTATCGCTATCGCTG
TAGCTGCCACTGTTGTTGTTGTTATTGCTGCTGTGTCTGTGCTGCGTGTC
GTCGTCGGCATTGGTTCATCCTTTGTTTTCTTCGCTGTTGTTGTCTCTGC
TCTTGGTTGTGTAGGATATCCCACACACACACACACACACACACTTGTCT
TTGTTGCGGAGAGTAGCATAGACTCCCCCATGACGCTCGGTCACAGGGTC
CCAGATCGTTACCTATATAATCACGTCGTGTTTCCCACCGCACTGACTTA
GACTCGGCATCTTTTCATTGGTCAGCCGGTTAGCGCGGTCGATGCTTGTC
ATAAACACACACACATACACACACGTACCCTTGTTCTTTGCTTGTACCCC
CGCCGCCGCCGCCGCCGCCCCCGCCTCTTCTACAGCAGAACATGATGACC
ATGAACGACTTCATGGAGAGCGACGCCGCTCTGAACCAGATGCTTCGCTC
CGTCACTCCCCAAGGCGCGGGCGGCGCCGGCGCCCCTCCCCTCGTCCGCG
TTGTTCGCGGGACCGGTGGGGCGGACACGGGCTGGACGGAGGTAGGTCGA
GTATACAACAGTAGTTGTTGGTTGTTGTTGTTGTTGTTGTTGTCTCCGCA
TCAACAACCGCCCCGATCTCTCTACCCAGTACCTCCATCTATGTAAGGCC
CGATCTCTCTACCCAGTACCTTCCTCTACATACAGGAGTCCAAAGTAGCG
AGGTTGCTGATGAAATCGCGGTTAGAAAATATTTTTGGCGCAACAACTTG
CGTAGTCTTCTCCCAAATTTTTGTTCAAGAGAGCTGAGGCGCGGGTTCCG
ATGAAACACTGTGATTTTCATCGGTCACTGTACGTAACGGGACCTCTACT
GTATGGGTGGACAGGAGGCGTGTTTAAAAATGGTGGTAGGTACTGGCGAC
GGGCCCACGACGTGATGTAGCGCGCTCGGATGTATGTTTGGGAGGAGGCC
GTTGTGGTTGGGAAGAGAGGGGCAGGCTGATGTTGTTCGCACGGGGTTTG
GAGGAGGCCGTAGGGGTTGGGCGGGTGGGAAGAGGGGCAGTTAATGTCGT
CGCAACAGAGTTTGCTTATGCTTTCGGCGGGGATGTTGATCCACTTCACC
CCTCTCACTCGTTCGTCGTGCATGCCCGGCCACCGTTTTACCTCTGCTCA
TCTCTCTCTCTGTGTGTCTCTCGGCCTCGGTCCAAAGCAGATGATCGCAC
ACGACCTCCATGCGGCTGCGCCAGGGCCTTCCCACAACACCACCAGGTGG
GAAGCCTGTGTCAATAGCGGGCCTGGCTTTGCGTGAACGGCTGCGGAGAT
GTTTTCTTGGTAGCGTGCCTTGACCGCCGCCCTTCGTGCCCTCTCTGCCC
TCGTTCGTTCGTTCGTTCGACTTGGACTTTACGCAATGGTAAAACAATTC
TGGAAGTAGCCACTACCCCCCAACCGTCCCACACACGCAAGACTGGCATC
TTTTCCGTGACTAGCCCATTGGGTGGCGCGGTGGATACCATTTTAAAACG
GCACAGAGAGAGAGAGGCAGCGAGAGAGAAAGAGAGATGAACTTGATGGC
ATTTCATTGGCCAGCCGGTTAGCACAGTCCGATATTTTCTATAGAGCGGA
TGGTACAAGTATGGTCTTTCCGTGATCGTGTTCCAGTATATACTTCTAAC
GTAGCCAACCCCCACGTTGCCCTCACCCTGAACCCCGCCGCCGCCCTTGC
TCCTCCCCCGAAACATCATTGTTATTATCGGCAGACTTTTCCCGGACGGC
CCGTCGGCGGCCACCCAGGCGCATGCCGCCCCCGTCGTGCACCCGCTCCT
CCTGAGGCACGTCAGGGCGCCGGGCAGCACGGGCAGCGGCAGTAGGAGCA
GCGGCCGCGGGGGCCGCGGCAGCCGGGGGGGCGGTGGTAACGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19169:39..2532+

>mRNA_Ecto-sp13_S_contig19169.6120.1 ID=mRNA_Ecto-sp13_S_contig19169.6120.1|Name=mRNA_Ecto-sp13_S_contig19169.6120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19169:39..2532+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCTGCCGCGGCCGGCCGCGCCGGGGGGCGCCCCGTGGTCCCGCCGGT
GTTCCAGCAAGCCATGGACGCCGGCGCTGCGGCTGGCATCGGGTTGGGAG
GGGGCGGCGGGGAAGGGTGGATTGCTCGAGGGGCTACGGCGGAGCAGCTG
TCTCTGTGGGGGGTGCAGCCGCCGCCGGGCCTGGCGAGACAGTACGCGAC
GCGGCACGGGGAGCGTGGGGGAGGAATGAACATGATGACCATGAACGACT
TCATGGAGAGCGACGCCGCTCTGAACCAGATGCTTCGCTCCGTCACTCCC
CAAGGCGCGGGCGGCGCCGGCGCCCCTCCCCTCGTCCGCGTTGTTCGCGG
GACCGGTGGGGCGGACACGGGCTGGACGGAGATGATCGCACACGACCTCC
ATGCGGCTGCGCCAGGGCCTTCCCACAACACCACCAGACTTTTCCCGGAC
GGCCCGTCGGCGGCCACCCAGGCGCATGCCGCCCCCGTCGTGCACCCGCT
CCTCCTGAGGCACGTCAGGGCGCCGGGCAGCACGGGCAGCGGCAGTAGGA
GCAGCGGCCGCGGGGGCCGCGGCAGCCGGGGGGGCGGTGGTAACGGC
back to top