mRNA_Ecto-sp13_S_contig19168.6119.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19168.6119.1
Unique NamemRNA_Ecto-sp13_S_contig19168.6119.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19168.6119.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.070e-45
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:    1 RRWCMTGTPYISRFSDVNGQLAFLGAEGAFRGGSDLGDKAPRRETQGETVAFLRRVLLRHSQGMKLGGHSILGLPTITHKV 243
            RRWCMTGTPYISRFSDVNGQLAFLGAEGAFRGGSDLGDKAPRRETQGETVAFLRRVLLRHSQGMKLGGHSILGLPTIT+KV
Sbjct:  829 RRWCMTGTPYISRFSDVNGQLAFLGAEGAFRGGSDLGDKAPRRETQGETVAFLRRVLLRHSQGMKLGGHSILGLPTITNKV 909
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BLAST of mRNA_Ecto-sp13_S_contig19168.6119.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.470e-37
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 RRWCMTGTPYISRFSDVNGQLAFLGAEGAFRGGSDLGDKAPRRETQGETVAFLRRVLLRHSQGMKLGGHSILGLPTITHKV 243
            RRWCMTGTPYISRFSD NGQL+F+GA GAFRG SDLGDK P RETQ ETVAFLRRVL RHSQGMKLGG SILGLP+ITHKV
Sbjct:  860 RRWCMTGTPYISRFSDANGQLSFVGAGGAFRG-SDLGDKGPNRETQVETVAFLRRVLFRHSQGMKLGGKSILGLPSITHKV 939
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BLAST of mRNA_Ecto-sp13_S_contig19168.6119.1 vs. uniprot
Match: D7G0T2_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T2_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 4.560e-37
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 RRWCMTGTPYISRFSDVNGQLAFLGAEGAFRGGSDLGDKAPRRETQGETVAFLRRVLLRHSQGMKLGGHSILGLPTITHKV 243
            RRWCMTGTPYISRFSD NGQL+F+GA  AFRG SDLGDK P RETQ ETVAFLRRVLLRHSQGMKLGG SILGLP+ITHKV
Sbjct:  799 RRWCMTGTPYISRFSDANGQLSFVGAGSAFRG-SDLGDKGPNRETQVETVAFLRRVLLRHSQGMKLGGKSILGLPSITHKV 878
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BLAST of mRNA_Ecto-sp13_S_contig19168.6119.1 vs. uniprot
Match: D7G0T8_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T8_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.200e-29
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:    1 RRWCMTGTPYISRFSDVNGQLAFLGAEGAFRGGSDLGDKAPRRETQGETVAFLRRVLLRHSQGMKLGGHSILGLPTITHKV 243
            RRWCMTGTP+ S+FSD+N QL+F+G  G+FR   DLGDK P  +TQ E  AFLRRV+LRHSQGMKLG +S+LGLPTITHKV
Sbjct:  774 RRWCMTGTPFTSKFSDLNRQLSFVGVAGSFRD-RDLGDKRPNTDTQVEVTAFLRRVVLRHSQGMKLGANSLLGLPTITHKV 853
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19168.6119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0S9_ECTSI1.070e-4598.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW09_9PHAE2.470e-3786.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T2_ECTSI4.560e-3786.42Helicase ATP-binding domain-containing protein n=1... [more]
D7G0T8_ECTSI1.200e-2970.37Helicase ATP-binding domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19168contigEcto-sp13_S_contig19168:2457..2723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score155.2
Seed ortholog evalue1.3e-35
Seed eggNOG ortholog2880.D7G0S9
Model size267
KEGG koko:K01259,ko:K15505,ko:K15711
KEGG ReactionR00135
KEGG Pathwayko00330,map00330
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27,3.4.11.5
Cds size255
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.2273548-CDS-Ecto-sp13_S_contig19168:2456..27111681462976.2273548-CDS-Ecto-sp13_S_contig19168:2456..2711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19168 2457..2711 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.2400591-UTR-Ecto-sp13_S_contig19168:2711..27231681462976.2400591-UTR-Ecto-sp13_S_contig19168:2711..2723Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19168 2712..2723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19168.6119.1prot_Ecto-sp13_S_contig19168.6119.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19168 2457..2711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19168.6119.1

>prot_Ecto-sp13_S_contig19168.6119.1 ID=prot_Ecto-sp13_S_contig19168.6119.1|Name=mRNA_Ecto-sp13_S_contig19168.6119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MTGTPYISRFSDVNGQLAFLGAEGAFRGGSDLGDKAPRRETQGETVAFLR
RVLLRHSQGMKLGGHSILGLPTITHKVGCTSRFV*
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mRNA from alignment at Ecto-sp13_S_contig19168:2457..2723-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19168.6119.1 ID=mRNA_Ecto-sp13_S_contig19168.6119.1|Name=mRNA_Ecto-sp13_S_contig19168.6119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19168:2457..2723- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGGTGGTGCATGACCGGCACCCCCTACATCTCCAGATTCTCCGACGT
GAACGGACAGCTCGCCTTTCTCGGCGCGGAGGGGGCCTTCAGGGGAGGTA
GCGACCTGGGCGACAAGGCGCCCCGCCGCGAGACCCAGGGGGAGACGGTG
GCGTTCCTGAGGAGGGTGCTCCTGAGACACTCGCAGGGCATGAAGCTCGG
GGGGCATAGCATCCTCGGCCTGCCGACCATAACTCACAAGGTGGGGTGCA
CTAGTCGTTTTGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19168:2457..2723-

>mRNA_Ecto-sp13_S_contig19168.6119.1 ID=mRNA_Ecto-sp13_S_contig19168.6119.1|Name=mRNA_Ecto-sp13_S_contig19168.6119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19168:2457..2723- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGGCACCCCCTACATCTCCAGATTCTCCGACGTGAACGGACAGCT
CGCCTTTCTCGGCGCGGAGGGGGCCTTCAGGGGAGGTAGCGACCTGGGCG
ACAAGGCGCCCCGCCGCGAGACCCAGGGGGAGACGGTGGCGTTCCTGAGG
AGGGTGCTCCTGAGACACTCGCAGGGCATGAAGCTCGGGGGGCATAGCAT
CCTCGGCCTGCCGACCATAACTCACAAGGTGGGGTGCACTAGTCGTTTTG
TTTGA
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