mRNA_Ecto-sp13_S_contig18459.5753.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18459.5753.1 vs. uniprot
Match: D7FZU0_ECTSI (Na+-bile acid cotransporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU0_ECTSI) HSP 1 Score: 246 bits (627), Expect = 6.800e-80 Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 1
Query: 49 KAPTGHGGRCRSVHSHGGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPGAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALVGAVLTLHAGG 477
KAP GHGGRCRSVHSHGGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLP AMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALVGAVLTLHAGG
Sbjct: 114 KAPAGHGGRCRSVHSHGGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALVGAVLTLHAGG 256
BLAST of mRNA_Ecto-sp13_S_contig18459.5753.1 vs. uniprot
Match: A0A6H5KM36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM36_9PHAE) HSP 1 Score: 210 bits (535), Expect = 3.180e-63 Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 1
Query: 97 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPGAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALVGAVLTLHAGG 477
GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLP AMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILL SGAALVGAVLTLHAGG
Sbjct: 251 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLRSGAALVGAVLTLHAGG 377
BLAST of mRNA_Ecto-sp13_S_contig18459.5753.1 vs. uniprot
Match: A0A835YU74_9STRA (Bile acid:sodium symporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU74_9STRA) HSP 1 Score: 130 bits (328), Expect = 5.970e-34 Identity = 80/127 (62.99%), Postives = 97/127 (76.38%), Query Frame = 1
Query: 97 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPGAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALVGAVLTLHAGG 477
GGTASNLV LIA D+ALSV +T ST+LA T LT+ LVG +V +SA L+ +TAQVVF P A+GLLL ++A+G TRRL+PYTPL CVALVA ICGSVVA N++ + SGA LV AV T+HAGG
Sbjct: 121 GGTASNLVALIAGADIALSVLLTAASTVLATAATPLLTRALVGGVVQVSARQLVVSTAQVVFAPVALGLLLASKAQGFTRRLSPYTPLACVALVACICGSVVAQNAAAVAASGARLVAAVATMHAGG 247
BLAST of mRNA_Ecto-sp13_S_contig18459.5753.1 vs. uniprot
Match: A0A7S0HP89_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HP89_9CRYP) HSP 1 Score: 110 bits (276), Expect = 2.920e-26 Identity = 69/127 (54.33%), Postives = 90/127 (70.87%), Query Frame = 1
Query: 97 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPGAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALVGAVLTLHAGG 477
GGTASNLVTLIA DVALSV MTTVST+ A ++T LT L G+LV + A L+ +T QVV P +GL +NT A G+ + ++ TPLLCV LV++ICGSV+A +S + +G L+GAV+ LH GG
Sbjct: 211 GGTASNLVTLIAKADVALSVLMTTVSTMAAPIMTPLLTSILAGSLVPVDASGLLISTLQVVLAPVGLGLAINTFAPGLCKMVSGVTPLLCVILVSLICGSVIAQTASSFIAAGLPLLGAVIGLHLGG 337
BLAST of mRNA_Ecto-sp13_S_contig18459.5753.1 vs. uniprot
Match: L1JAR9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAR9_GUITC) HSP 1 Score: 109 bits (272), Expect = 1.210e-25 Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 1
Query: 97 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPGAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALVGAVLTLHAGG 477
GGTASNLVTLIA DVALSV MTTVST+ A ++T LT L G+LV + A L+ +T QVV P +GL +NT A + + ++ TPLLCV LV++ICGSV+A +S + +G L+GAV+ LH GG
Sbjct: 103 GGTASNLVTLIAKADVALSVLMTTVSTMAAPIMTPLLTSILAGSLVPVDASGLLISTLQVVLAPVGLGLAINTFAPAVCKMVSGVTPLLCVVLVSLICGSVIAQTASSFIAAGLPLLGAVIGLHLGG 229
BLAST of mRNA_Ecto-sp13_S_contig18459.5753.1 vs. uniprot
Match: A0A1Z5JT56_FISSO (Bile acid:Na+ symporter, BASS family n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JT56_FISSO) HSP 1 Score: 102 bits (254), Expect = 1.220e-22 Identity = 69/136 (50.74%), Postives = 92/136 (67.65%), Query Frame = 1
Query: 70 GRCRSVHSHGGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPGAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGA--ALVGAVLTLHA 471
G C S GGTASNLV+LIA DVALSV +T +ST++A +T L KFLVGA + +S + L +ATA+VV +P G++LN + + R L+ +TP V LVA+ICG VVA N+++LLG AL+ AVL LHA
Sbjct: 197 GLCLVGASPGGTASNLVSLIAQADVALSVILTAISTMMAVFMTPLLVKFLVGANIQVSGMALCEATARVVLVPVLGGMVLNAKLPRVARFLSRFTPFASVLLVALICGGVVAQNAALLLGEAGPRALLPAVLLLHA 332
BLAST of mRNA_Ecto-sp13_S_contig18459.5753.1 vs. uniprot
Match: W7U603_9STRA (Sodium bile acid symporter family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U603_9STRA) HSP 1 Score: 101 bits (252), Expect = 2.050e-22 Identity = 69/132 (52.27%), Postives = 88/132 (66.67%), Query Frame = 1
Query: 97 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPGAMGLLLNTRA-----KGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALVGAVLTLHAGG 477
GGTASNLVTL+A DVALS+SMT VSTL A +T LT L+G+LV + L++ T QVV LP A+GL+ N+ +TR L TPL+ LVA ICG VVA N++ +L SG +L+GAVL LH+ G
Sbjct: 202 GGTASNLVTLLAEADVALSISMTAVSTLTAGAMTPLLTSLLLGSLVPVDTAALLRTTLQVVLLPVALGLVTNSYLLPSLPPSLTRGLTRSTPLVSGLLVAAICGKVVATNAAAVLQSGGSLLGAVLALHSFG 333
BLAST of mRNA_Ecto-sp13_S_contig18459.5753.1 vs. uniprot
Match: A0A061REZ3_9CHLO (Bile acid:Na+ symporter, BASS family n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061REZ3_9CHLO) HSP 1 Score: 101 bits (251), Expect = 2.740e-22 Identity = 67/127 (52.76%), Postives = 81/127 (63.78%), Query Frame = 1
Query: 97 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPGAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALVGAVLTLHAGG 477
GGTASN+VT +A DVALSV MTTVST+LAA++T LTK VG +V + A L K+T QVV LP G LN R P++P++ VA+VAMIC SVVAA + G LV V LHAGG
Sbjct: 194 GGTASNIVTFLARADVALSVGMTTVSTVLAALMTPLLTKLAVGTMVPVDAAALFKSTCQVVLLPVMAGAALNRFFPRQVARTRPFSPVVAVAIVAMICASVVAAQEGAIRRCGLQLVACVFGLHAGG 320
BLAST of mRNA_Ecto-sp13_S_contig18459.5753.1 vs. uniprot
Match: A0A7S1SKH7_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SKH7_9CHLO) HSP 1 Score: 101 bits (252), Expect = 4.620e-22 Identity = 63/127 (49.61%), Postives = 84/127 (66.14%), Query Frame = 1
Query: 97 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPGAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAALVGAVLTLHAGG 477
GGTASN+VT +A DVALSV +TTVSTLLAA +T LT+ VG LV ++ + L K+T QVV P A G LN G R P++P++ + VA+ICGSVVA + ++ SG L+G + LH+GG
Sbjct: 374 GGTASNIVTFLAKADVALSVGLTTVSTLLAAFMTPMLTQLAVGTLVPVNVLALFKSTCQVVLAPVAAGAALNHFFPGPVARSRPFSPIVAILTVALICGSVVAQQADVIRSSGLHLLGCICLLHSGG 500
BLAST of mRNA_Ecto-sp13_S_contig18459.5753.1 vs. uniprot
Match: B5Y441_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y441_PHATC) HSP 1 Score: 99.4 bits (246), Expect = 4.810e-22 Identity = 75/150 (50.00%), Postives = 98/150 (65.33%), Query Frame = 1
Query: 46 SKAPTGHG---GRCRSVHSHGGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPGAMGLLLNTRAKGITRRLAPYTPLLCVALVAMICGSVVAANSSILLGSGAA-----LVG-AVLTLH 468
S PTG G C S GGTASNLV+LIA DVALSV +TT ST+LA + T L K LVG+ V +S V L++ATA+VV LP +G++LN + + R L+ +TP V LV++ICG VVA N+S+LL S A+ ++G AVL LH
Sbjct: 87 SSGPTGPSLFLGLCLVGCSPGGTASNLVSLIAQADVALSVILTTCSTVLAVLATPLLVKLLVGSTVAVSGVALVQATARVVLLPVLLGMILNAKLPRLARFLSRFTPFASVLLVSLICGGVVAQNASMLLHSPASAANLSVIGVAVLMLH 236 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18459.5753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18459.5753.1 >prot_Ecto-sp13_S_contig18459.5753.1 ID=prot_Ecto-sp13_S_contig18459.5753.1|Name=mRNA_Ecto-sp13_S_contig18459.5753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp LHGNDAHPGRLRRRRSKAPTGHGGRCRSVHSHGGTASNLVTLIANGDVALback to top mRNA from alignment at Ecto-sp13_S_contig18459:579..3360- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18459.5753.1 ID=mRNA_Ecto-sp13_S_contig18459.5753.1|Name=mRNA_Ecto-sp13_S_contig18459.5753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2782bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18459:579..3360- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18459:579..3360- >mRNA_Ecto-sp13_S_contig18459.5753.1 ID=mRNA_Ecto-sp13_S_contig18459.5753.1|Name=mRNA_Ecto-sp13_S_contig18459.5753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18459:579..3360- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |