mRNA_Ecto-sp13_S_contig17454.5232.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17454.5232.1 vs. uniprot
Match: D8LSH8_ECTSI (DUF2451 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH8_ECTSI) HSP 1 Score: 339 bits (870), Expect = 2.200e-112 Identity = 232/297 (78.11%), Postives = 234/297 (78.79%), Query Frame = 1
Query: 1 MMIAPPSCFFLSSQLLPPSLPPSLPSLSRFVCLCLXXXXXXXXXTLHARLGLLPVSQRAAVDAYVAEIEQVTAQLRSFAYWAQAPGLVGGEGIAAAVEGQSWTRKKIRNDASPYVEEWITRCLLIRGAIYPPSQTPXXXXXXXXXXXXXXAGNGLPPDAVDAXXXXXX---AGIERSATNRRGXXXXXXXXXXXXXXXXAADGTVGSVIPTRARRLVWCRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQARSCCSAALALGLEDPAATQAAKAHVHAYVNAFYFGDEDLHKWIK 882
M+IAPPS FFLSS+LLPPSL XXXXXXX ARLGLLPVSQRAAVDAYVAEIEQVTAQLRSFAYWAQAPGLVGGEGIA AVEGQSWTRKKIRNDASPYVEEW TRCLLIRGAIYPPSQT XXXXXXXXXXXXXX XXXXXX AGIER ATN R XXXXAADGTVGSVIP RARRLVW RVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQA LALGLEDPAATQAAKAHVHAYVNAFYFGDEDLHKWIK
Sbjct: 1 MIIAPPSRFFLSSRLLPPSLXXXXXXXXXXXXXXXSPXXXXXXXXHRARLGLLPVSQRAAVDAYVAEIEQVTAQLRSFAYWAQAPGLVGGEGIATAVEGQSWTRKKIRNDASPYVEEWTTRCLLIRGAIYPPSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGIERPATNGRVRGGRGESAGSGGXXXXAADGTVGSVIPARARRLVWRRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQA-------LALGLEDPAATQAAKAHVHAYVNAFYFGDEDLHKWIK 290
BLAST of mRNA_Ecto-sp13_S_contig17454.5232.1 vs. uniprot
Match: A0A6H5KJN5_9PHAE (DUF2451 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN5_9PHAE) HSP 1 Score: 303 bits (777), Expect = 2.240e-94 Identity = 209/254 (82.28%), Postives = 209/254 (82.28%), Query Frame = 1
Query: 142 ARLGLLPVSQRAAVDAYVAEIEQVTAQLRSFAYWAQAPGLVGGEGIAAAVEGQSWTRKKIRNDASPYVEEWITRCLLIRGAIYPPSQTPXXXXXXXXXXXXXXAGNGLPPDAVDAXXXXXXAGIERSATNRRGXXXXXXXXXXXXXXXX-------AADGTVGSVIPTRARRLVWCRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQARSCCSAALALGLEDPAATQAAKAHVHAYVNAFYFGDEDLHKWIK 882
A LGLLPVSQRAAVDAYVAEIEQVTAQLRSFAYWAQAPGLVGGEGIAAAVEGQSWTRKKIRNDASPYVEEWITRCLLIRGAIYPPSQTP XXXXXXXXXXXX XXXXXX XXXXXXXXXXXXXXXX ADGTVGSVIP RARRLVW RVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQA LALGLEDPAAT AAKAHVHAYVNAFYFGDEDLHKWIK
Sbjct: 391 AGLGLLPVSQRAAVDAYVAEIEQVTAQLRSFAYWAQAPGLVGGEGIAAAVEGQSWTRKKIRNDASPYVEEWITRCLLIRGAIYPPSQTPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTADGTVGSVIPARARRLVWRRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQA-------LALGLEDPAATHAAKAHVHAYVNAFYFGDEDLHKWIK 637
BLAST of mRNA_Ecto-sp13_S_contig17454.5232.1 vs. uniprot
Match: W7TPS4_9STRA (Vacuolar protein sorting-associated protein 54 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPS4_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 4.160e-12 Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1
Query: 595 DGTVGSVIPTRARRLVWCRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQARSCCSAALALGLEDPAATQAAK--AHVHAYVNAFYFGDEDLHKWIK 882
DG IP+ A+ L+W V ++ +LL GFSR+ +CSTEGR+LMSMDLQA + +GL++ + A+ A+V Y+ AFY+G D+ W++
Sbjct: 1317 DGLDNMYIPSEAKVLIWTEVAQCIMGTLLEGFSRIDKCSTEGRSLMSMDLQA-------IQVGLDEILRVRPARGRAYVENYIKAFYYGQVDVMSWVE 1407
BLAST of mRNA_Ecto-sp13_S_contig17454.5232.1 vs. uniprot
Match: A0A7S1UKD0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKD0_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 4.520e-10 Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 1
Query: 607 GSVIPTRARRLVWCRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQARSCCSAALALGLEDPAATQAAKAHVHAYVNAFYFGDEDLHKWIK 882
G VI + L W A + +L+ GFSRV+ CSTEGRALMSMD+QA +AL +PA ++ AYV AFY+G+ D+ WI+
Sbjct: 235 GGVIAPPRKSLFWTEFCQACMETLVEGFSRVKNCSTEGRALMSMDVQALHQGLSAL-----EPARAARSRVWADAYVKAFYYGEADVVGWIE 321
BLAST of mRNA_Ecto-sp13_S_contig17454.5232.1 vs. uniprot
Match: A0A836CNI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI9_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 6.580e-10 Identity = 86/247 (34.82%), Postives = 114/247 (46.15%), Query Frame = 1
Query: 154 LLPVSQRAAVDAYVAEIEQVTAQLRSFAYWAQAPGLVGGEGIAAAVEGQSWTRKKIRNDASPYVEEWITRCLLIRGAIYP----PSQTPXXXXXXXXXXXXXXAGNGLPPDAVDAXXXXXXAGIERSATNRRGXXXXXXXXXXXXXXXXAADGTVGSVIPTRARRLVWCRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQARSCCSAALALGLEDPAATQAAKAHVHAYVNAFYFGDEDLHKWIK 882
LLP +RA A+VA + QLR F Y L + + AAVE W +R ++S YV+ R + + P P PXXXXXXXXXXXXXX P A I+RS +R + T P RR C A+L +L+ G++R RRC+TEGRALM MDLQ S A+ L AA + A+V ++NAFY D DL +W++
Sbjct: 1561 LLPPHERARAAAHVAATARAALQLRRFVYRCAGALLAAQDRLVAAVEATPWALTALRTESSDYVKACAARAERVYALLAPDGPLPRAPPXXXXXXXXXXXXXXXXXXALPLPAAARPVLYRECIQRSRQHRLKYTARAFARTQQLHRTAPLNVTR---TPRCCRRRRCC--AQAILDALVEGYARGRRCTTEGRALMCMDLQELSAELDAIR-PLRGAAAPARSHAYVFGWINAFYLED-DLMRWVE 1800
BLAST of mRNA_Ecto-sp13_S_contig17454.5232.1 vs. uniprot
Match: F0YK23_AURAN (DUF2451 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK23_AURAN) HSP 1 Score: 64.3 bits (155), Expect = 1.790e-9 Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = 1
Query: 637 LVWCRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQARSCCSAALALGLEDPAATQAAKAHVHAYVNAFYFGDEDLHKWI 879
L+W V A + + GF+RV RCSTEGRALMSMDLQ +L PA A+ +Y+ A+YF + DL W+
Sbjct: 3 LIWTHAVQAAFEAFVEGFARVGRCSTEGRALMSMDLQVLQ-----FSLDKMHPARPLRGAAYADSYIKAWYFDNRDLRAWV 78
BLAST of mRNA_Ecto-sp13_S_contig17454.5232.1 vs. uniprot
Match: A0A7S4JFC0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JFC0_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 3.450e-9 Identity = 43/109 (39.45%), Postives = 56/109 (51.38%), Query Frame = 1
Query: 607 GSVIPTRARRLVWCRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQARSCCSAALALGLEDPAATQAAKAHVHA------------------YVNAFYFGDEDLHKWI 879
G+ +PT + +W +V+ LS+L GFS VR CSTEGRALMSMDL AAL+ GLE A H+ Y+ AFYF ++D+ KWI
Sbjct: 905 GAELPTTTMKSLWGDIVELCFLSILEGFSMVRACSTEGRALMSMDL-------AALSSGLEAHAVMDRLPGTFHSECFPSSSTPDRGMLYVDMYIKAFYFPEKDVMKWI 1006
BLAST of mRNA_Ecto-sp13_S_contig17454.5232.1 vs. uniprot
Match: A0A7S4VAI2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VAI2_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 7.530e-8 Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 1
Query: 616 IPTRARRLVWCRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQARSCCSAALAL------GLED-----PAATQAAKAHVHAYVNAFYFGDEDLHKWI 879
+P + W V+ LSLL GFSR+ CSTEGRALMSMDL S + A ++ +E PA Q K +V YV +Y+ +ED+ WI
Sbjct: 515 LPAFVMSMAWDYVISGSFLSLLEGFSRILTCSTEGRALMSMDLVTFSSGTNAFSVMDRIQGSMESVDTPPPAMPQRGKLYVDTYVKVYYYPEEDIMNWI 613
BLAST of mRNA_Ecto-sp13_S_contig17454.5232.1 vs. uniprot
Match: A0A7S4VS02_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VS02_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 9.090e-8 Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 1
Query: 616 IPTRARRLVWCRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQARSCCSAALAL------GLED-----PAATQAAKAHVHAYVNAFYFGDEDLHKWI 879
+P + W V+ LSLL GFSR+ CSTEGRALMSMDL S + A ++ +E PA Q K +V YV +Y+ +ED+ WI
Sbjct: 1259 LPAFVMSMAWDYVISGSFLSLLEGFSRILTCSTEGRALMSMDLVTFSSGTNAFSVMDRIQGSMESVDTPPPAMPQRGKLYVDTYVKVYYYPEEDIMNWI 1357
BLAST of mRNA_Ecto-sp13_S_contig17454.5232.1 vs. uniprot
Match: A0A3L6VAI2_9STRA (DUF2451 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VAI2_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.420e-7 Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 1
Query: 607 GSVIPTRARRLVWCRVVDALLLSLLRGFSRVRRCSTEGRALMSMDLQARSCCSAALALGLEDPAATQA----AKAHVHAYVNAFYFGDEDLHKWI 879
GS +P R +W VV A++ +L+ G++ V++CS EGRALMSMDL A L GL+ T + +A+VH Y+ A+YF + +L +I
Sbjct: 7 GSAVPVAVRDELWAVVVRAVMEALVDGYANVKKCSAEGRALMSMDLMA-------LQNGLDLINHTVSEHRWGRAYVHNYIKAYYFQEPELLAFI 94 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17454.5232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17454.5232.1 >prot_Ecto-sp13_S_contig17454.5232.1 ID=prot_Ecto-sp13_S_contig17454.5232.1|Name=mRNA_Ecto-sp13_S_contig17454.5232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=297bp MMIAPPSCFFLSSQLLPPSLPPSLPSLSRFVCLCLPSCLPPSLPTLHARLback to top mRNA from alignment at Ecto-sp13_S_contig17454:1694..3555+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17454.5232.1 ID=mRNA_Ecto-sp13_S_contig17454.5232.1|Name=mRNA_Ecto-sp13_S_contig17454.5232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1862bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17454:1694..3555+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17454:1694..3555+ >mRNA_Ecto-sp13_S_contig17454.5232.1 ID=mRNA_Ecto-sp13_S_contig17454.5232.1|Name=mRNA_Ecto-sp13_S_contig17454.5232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17454:1694..3555+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |