mRNA_Ecto-sp13_S_contig1741.5213.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1741.5213.1
Unique NamemRNA_Ecto-sp13_S_contig1741.5213.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1741.5213.1 vs. uniprot
Match: D7FT70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT70_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 4.180e-63
Identity = 118/128 (92.19%), Postives = 119/128 (92.97%), Query Frame = 1 
Query:    1 MALAKGQSLASLQKEKAAAPGSTTAPATSAAADAPGSASRVINLAGDDGIPPPAAAAVPQGQAAVAGRAAGVSPAMAGASGG-AAPHLVATRPRGGKGLNYLQQRAEPIALPPRRLPGAVAGRRSRWP 381
            MALAKGQSLASLQKEKAAAPGSTTAPAT+AAADAPGS   VINLAGDDGIPP AAAAVPQGQA VAGRAAGVSPAMAGASGG AAP  VATRPRGGKGLNYLQQRAEPIALPPRRLPG VAGRRSRWP
Sbjct:    1 MALAKGQSLASLQKEKAAAPGSTTAPATNAAADAPGS---VINLAGDDGIPPAAAAAVPQGQATVAGRAAGVSPAMAGASGGGAAPPPVATRPRGGKGLNYLQQRAEPIALPPRRLPGVVAGRRSRWP 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1741.5213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT70_ECTSI4.180e-6392.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1741contigEcto-sp13_S_contig1741:9381..13133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size387
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003390.1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.4550376-CDS-Ecto-sp13_S_contig1741:9380..95001681462908.4550376-CDS-Ecto-sp13_S_contig1741:9380..9500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1741 9381..9500 +
1681462908.466589-CDS-Ecto-sp13_S_contig1741:10154..103551681462908.466589-CDS-Ecto-sp13_S_contig1741:10154..10355Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1741 10155..10355 +
1681462908.47739-CDS-Ecto-sp13_S_contig1741:13067..131331681462908.47739-CDS-Ecto-sp13_S_contig1741:13067..13133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1741 13068..13133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1741.5213.1prot_Ecto-sp13_S_contig1741.5213.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1741 9381..13133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1741.5213.1

>prot_Ecto-sp13_S_contig1741.5213.1 ID=prot_Ecto-sp13_S_contig1741.5213.1|Name=mRNA_Ecto-sp13_S_contig1741.5213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
MALAKGQSLASLQKEKAAAPGSTTAPATSAAADAPGSASRVINLAGDDGI
PPPAAAAVPQGQAAVAGRAAGVSPAMAGASGGAAPHLVATRPRGGKGLNY
LQQRAEPIALPPRRLPGAVAGRRSRWPR*
back to top

mRNA from alignment at Ecto-sp13_S_contig1741:9381..13133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1741.5213.1 ID=mRNA_Ecto-sp13_S_contig1741.5213.1|Name=mRNA_Ecto-sp13_S_contig1741.5213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1741:9381..13133+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTTGCCAAGGGCCAGTCACTCGCATCGCTGCAGAAAGAGAAGGC
GGCGGCGCCAGGCAGCACAACGGCGCCCGCAACAAGCGCAGCGGCTGACG
CGCCCGGTTCGGCAAGTCGAGTAGGAGAGCGTGCATGCTCTGCATACTTT
GAGAGCACGTGTGGTAGAACGAAGGGAGAGGGAGGGTGACCTGGCGGGCA
TTTCTTGGCGCCTTAGACATGATGCACCCGAAGTTTATTGATCGAAGCTG
CATGGAGCAGTGCGTGGCTCACCCCTGCCGGTACAGAAGGATCTTCTGTG
TTTGACCATGGGGGGTGGGATTCTGCGCCGGGTGGCTCCTCGCCCGACAT
TTCCACACTGCCGTGCTCCAACTGGCCAGGAACATTTGTTCGGTTATTTC
CGAAGCCATCCCTCTCTGTCCAGCCTGCTCGTGTTACCTTTCTGTGGTCA
TTCGCTTTCGAAAGAGAAGCAAACGAGGAATTTGCGAGGGAAGCGCCACC
TGAGCAGGCATTCGCCTCAACAATACCAGCGGTGATCATGTTGATTTATC
CTTTCGTGCCTGTCGATGGCAGCGGAACGGGGCAGCGTGGGGGGGGTGGG
GGGGATTTGGTCAGGCAATACCCTTGATCCGCACGCAGGAACATGGCTGT
GCACGATGGCTGTTGTTTGAGTGACGTCGACGGGGGCACGAGATATCGTA
TTTGACCCCACCCACCCAACCACCCACCCACCCACCCACCACCTATCCAC
CGCCCCCTGGTTGGCGACGAACAGGTGATCAACCTAGCCGGCGACGATGG
GATACCTCCGCCCGCTGCGGCGGCGGTACCCCAGGGGCAGGCAGCAGTGG
CCGGTCGAGCTGCTGGTGTCTCCCCAGCGATGGCGGGCGCAAGCGGAGGC
GCCGCCCCTCACCTTGTAGCTACGCGCCCTCGGGGGGGGAAAGGGCTGAA
CTACCTCCAGCAGCGCGCGGAGCCGGTGCGTTGTAGTTTTCGCCCCATTT
TTTCGGCAGCATTCTACATCAGCCGTGCTTCGCCTCTCTCTCTCTTGTCT
CTTAGTCCCTCTATCTGTTTGTCTGTTTGTCTGTGTCTCTGTCTGTGTCT
CTGTCTGTCTCAGTCCGTCTCTCTCTCTCTCTCTCTTCCTGCTCCACGAC
GCTGTCGTCGAACATGTTGGCTTGTGTCACCGCATGTGATACCTCGTGGC
GTGCCAACCGCCGCTTGATGTTTGGGTTGACGCTCATACTTGTGGGTCGG
TGCGACTTTTTTGTTTTGCTCGCGATTCTCATGTCCCTGGTCAGGCAAGA
GTTGCGCAGCCGGCCGTGGCCGCGAGTATGCCGCAACAGGCGCAACCACA
ACAGGCCGCTCTTCAAGTGGCACAGCAGCAGCAGCAGCAACAGCAGCAGC
AGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TTGCAAGCAGCGCCAGCCCAACACGCTGCGGGTGCTGTTTCACAGCAAGG
GGTTCAGCAGCCCAATGTCCATCAGCAGACTCTGCAACAGCAGCAGACAC
TGCAACAGCAGGCACAGCAGGCACAGCAGGCACTGCAACAGCAGCGGGCA
ATGCAGCAGCAGACTCTGCAGCAGCAGCAGACTCTGCAGCAGCAGCAGAC
TCTGAAGCAGCAGCAGCAGCAACAGCAGCAGGTTTTGCAGCAACAGCAGA
GAAGTCACCAGCTTGCCTTACAAGCCATGCACCAGCAGCGCCACCACCAA
GCCCAGGCTTTGTCCCAGCAGCAGGCGGTAGCGCAAGCACAGGTCCATGC
GCTAGCACGCCAGCATTCTCAGCAGCAGCACATTCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGGGAGTCGGGGTTGCCCAAGCCGCCGTC
GTAGAACCAGTAGCCCGGGCGACTCAAAGCCCAGGCGGAGCAGCAGTGTT
AGGCGTCCGTCAAGCAGGAGTGGTGACACCAGCAGGGCAAACGGCTCCCA
GTCAGTACGTTCGAGCTTCGGAAGGGGCGGTGGCTTGGGCGGCGGCGCAG
CACGTGCCGCAAGCAGCAGCCCAGCAGCAAGCTGCAGCTGCAGCTGCTGC
CGCCACTGCTGCTGCCGCCGCCGCCGTATCCGCACCCGCTGCTTCTGTTG
CTTCTTCAACCGCTGCTACAGCTCAGGGACAAGCAGCAAGGGGTCAAGTT
TCTGCTGCGACCCCCCAGGCATCGCCGGCCTTCGCCCACACTTTAGCCGG
GCAGCATGCCCAAGCTCAGGCACAGCAGCAGCAGCAGCAGTTTACTCAGG
CCCAAGCTGCTGCGACTCAGCAACAACAGGCTGCGACCGCTCAGCAGCAA
CAGCAGGTTGCCGCACATGCCGCACATTTGGCCCACCAGCAGAAGCTGCA
GCTGCAGCTTCAGCAGCAACAGCAGCAACAGCAGCAGCTACAACAACAGC
AGCACCTACAACAACAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACTGCAGCAGCAGCAGTCATACACCGC
CCAAGCTCAGCAGGTGCAAGCGGCAAAAGCCGAGGAAGAGCGAAAGAGGA
CGCTTGCGGCAGCGGCGCAGGCCCAACTCGACGCCACGAAGCGACAAGTC
GCCCTGCAGGAGCAGTCCCAACACTCTCAGCGGAATCAGCCAGTCCATCA
GCAGAACAAGAAGGAGGCGGTGGCAACCCCGCAAGCTCAACAGCAGCAGC
AGCAGCAGCCGCAGCAAGAACAGCAGCAACAGCAATGGAGAGGTAGAGTG
CGCACGGGCCTTATTGCGGCGTTTGCTAGGAGAAAAGTATTTGCGTTGGC
ATCGGCGGTGGGGGGGGGGGGGGGGGGGGCGGAGTCCCCCAGCCACCCTT
TTTGATCTCACAAAAAACCAACCGAAGGGCTCGATGTCGTAGCCTAGAAC
GCGCCTAAGCCAACGGAAACCCGATCAAAAGGTGTTCGGTCCTGGCTCTG
CAGTAGCCAAGCAAGGGTCTTAGGCCTTGCAAAAACGTCTGCCTGAAACG
AACGGCAACCTCCCCCCGCTACGCACACTCCCCTTGCCGCGCCTGTGCTG
CTCAGAAAGAAACGGTGTAGGCATTTTTTAGCCCCAGAGTGAAACCTCGG
CAACTCGTCACATATGTTTGTCAGAACCATACGTGTCGTGTATGGTCGTG
TATTTGTTGCTCTGGCGTCTGACACGGGTTCCCCAAGACGATAGCGGCGG
GACTCCGCGCACAACGATCCGCCACGACCGATGATGCCCCACCGCTCATC
GTCTTCTCTACCGCTGTGCCGCTACCGCGACCGTCATCGTGGCGAACACG
TGACAGGACCTTCTGGTGTCGGATGGTGCTTGATTCCGCACATGTATGAG
CACCCGCACGCCTTCGATAATGGTGGTCGTGGTTTGTTGGTTCTCTACCG
GCCGTGTACATACCCACCACCCACCGTTTGTTGGTCCTCTACCAGCCGTG
TACGCACCCAACACGCATCGAGAAAAAACCCGTGGGTGTCCGCGTCCCCC
GCCGGCGCGGTAGATAGCGTAGCCGCCGCGCTGTCGCCGCTGGTTTTGGT
GAACACCCAACTATACATGCCACCCAAATATACTACACATGTAAACCTAC
CCTTGTGTTTCCGTTCCCCGCCCTGCCGGCCCGGCAGATAGCGTTGCCTC
CGCGACGGCTGCCGGGGGCGGTAGCGGGGCGGCGAAGTCGATGGCCGCGA
TGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1741:9381..13133+

>mRNA_Ecto-sp13_S_contig1741.5213.1 ID=mRNA_Ecto-sp13_S_contig1741.5213.1|Name=mRNA_Ecto-sp13_S_contig1741.5213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1741:9381..13133+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTTGCCAAGGGCCAGTCACTCGCATCGCTGCAGAAAGAGAAGGC
GGCGGCGCCAGGCAGCACAACGGCGCCCGCAACAAGCGCAGCGGCTGACG
CGCCCGGTTCGGCAAGTCGAGTGATCAACCTAGCCGGCGACGATGGGATA
CCTCCGCCCGCTGCGGCGGCGGTACCCCAGGGGCAGGCAGCAGTGGCCGG
TCGAGCTGCTGGTGTCTCCCCAGCGATGGCGGGCGCAAGCGGAGGCGCCG
CCCCTCACCTTGTAGCTACGCGCCCTCGGGGGGGGAAAGGGCTGAACTAC
CTCCAGCAGCGCGCGGAGCCGATAGCGTTGCCTCCGCGACGGCTGCCGGG
GGCGGTAGCGGGGCGGCGAAGTCGATGGCCGCGATGA
back to top