mRNA_Ecto-sp13_S_contig17405.5210.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17405.5210.1
Unique NamemRNA_Ecto-sp13_S_contig17405.5210.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17405.5210.1 vs. uniprot
Match: D8LII6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LII6_ECTSI)

HSP 1 Score: 551 bits (1420), Expect = 1.830e-179
Identity = 282/304 (92.76%), Postives = 295/304 (97.04%), Query Frame = 1 
Query:    4 RDSALPGRDCGDPTTREVGFFLRQFKQTGKVPEALRSLIVFQPKSWARIRKVLLAPPAERIALPDDSGRILPPDSAVVKEAIGSGEGGLRVEVSLKYRRLLVQKLAKSSLITAQEHESFRNSYVEYLQSQRHQDEAESSGLEAAATGVVGQLVLLESKLNDRGSVKIDDGNDGSSAVEERLALLLQEFLPRALVVEVCMEDEGEAGGHNPDSRPDRAWFSRATQLLRQILDQWKRQRFPAASQEGDSPGLGASPEAVAEAILNSVHCCVAAVGASLVIPTSGKPGSAERQQHLNRNVGAEGIVR 915
            RDSALPGRDCGDPTTREVGFFLRQFKQT KVPEALRSLIVFQPKSWARIRKVLLAPPAERIA+PDDSGRILPPDSAVVKEAIGSGEGGLRVEVSLKYRRLLVQKLAKSSLITAQEHESFRNSYVEYLQSQRHQDEAESSG+EAAATGV GQL+LLESKLN+R S KIDDG+DGSSAVEERLALLLQEFLPRALVVE+CMEDEGEA GHNP+SRP RAWFSRATQLLRQIL+QWKRQRFPAA +EGDSPGLGASPEAVAEAILNSVHCCVAAVGASLVIPTSGKPG ++RQQ L+RNVGAEG+VR
Sbjct:  651 RDSALPGRDCGDPTTREVGFFLRQFKQTDKVPEALRSLIVFQPKSWARIRKVLLAPPAERIAMPDDSGRILPPDSAVVKEAIGSGEGGLRVEVSLKYRRLLVQKLAKSSLITAQEHESFRNSYVEYLQSQRHQDEAESSGMEAAATGVAGQLLLLESKLNERCSAKIDDGHDGSSAVEERLALLLQEFLPRALVVELCMEDEGEAEGHNPESRPGRAWFSRATQLLRQILEQWKRQRFPAADREGDSPGLGASPEAVAEAILNSVHCCVAAVGASLVIPTSGKPGLSKRQQDLDRNVGAEGVVR 954
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BLAST of mRNA_Ecto-sp13_S_contig17405.5210.1 vs. uniprot
Match: A0A6H5K6S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S2_9PHAE)

HSP 1 Score: 481 bits (1238), Expect = 3.550e-153
Identity = 259/323 (80.19%), Postives = 270/323 (83.59%), Query Frame = 1 
Query:    4 RDSALPGRDCGDPTTRE-------------------VGFFLRQFKQTGKVPEALRSLIVFQPKSWARIRKVLLAPPAERIALPDDSGRILPPDSAVVKEAIGSGEGGLRVEVSLKYRRLLVQKLAKSSLITAQEHESFRNSYVEYLQSQRHQDEAESSGLEAAATGVVGQLVLLESKLNDRGSVKIDDGNDGSSAVEERLALLLQEFLPRALVVEVCMEDEGEAGGHNPDSRPDRAWFSRATQLLRQILDQWKRQRFPAASQEGDSPGLGASPEAVAEAILNSVHCCVAAVGASLVIPTSGKPGSAERQQHLNRNVGAEGIVR 915
            RDSALPGRDCGDPTTRE                   VGFFLRQFKQTGKVPEALRSLIVFQPKSWARIRKVLLAPPAERIA+PDD+GRILP DSAVVKEAIGSGEGGLRVEVSLKYRRLLVQKLAKSSLITAQEHESF                  S GLEA ATGV GQL+LLESKLN+R S K DD NDGSS VEERLALLLQEFLPRALVVE+CMEDEGEA GHNP+SR DRAWFSRATQ+LRQILDQWKRQRFPAA +EGD PGLGASPEAVAEAILNSVHCCVAAVGASLVIPTSGK G A+RQQ L+RNVGAEG+VR
Sbjct:  711 RDSALPGRDCGDPTTREARTSPPLQIDYVPTLGRHEVGFFLRQFKQTGKVPEALRSLIVFQPKSWARIRKVLLAPPAERIAMPDDNGRILPLDSAVVKEAIGSGEGGLRVEVSLKYRRLLVQKLAKSSLITAQEHESF------------------SPGLEAEATGVAGQLMLLESKLNERASAKSDDVNDGSSGVEERLALLLQEFLPRALVVELCMEDEGEARGHNPESRSDRAWFSRATQILRQILDQWKRQRFPAAGREGDLPGLGASPEAVAEAILNSVHCCVAAVGASLVIPTSGKSGLAKRQQDLDRNVGAEGVVR 1015
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17405.5210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LII6_ECTSI1.830e-17992.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6S2_9PHAE3.550e-15380.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17405contigEcto-sp13_S_contig17405:143..2759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size917
Hectar predicted targeting categoryother localisation
Exons6
Cds size915
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17405.5210.1prot_Ecto-sp13_S_contig17405.5210.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17405 143..2759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462908.183039-CDS-Ecto-sp13_S_contig17405:142..1961681462908.183039-CDS-Ecto-sp13_S_contig17405:142..196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17405 143..196 +
1681462908.1934676-CDS-Ecto-sp13_S_contig17405:645..7871681462908.1934676-CDS-Ecto-sp13_S_contig17405:645..787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17405 646..787 +
1681462908.2021089-CDS-Ecto-sp13_S_contig17405:1005..11711681462908.2021089-CDS-Ecto-sp13_S_contig17405:1005..1171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17405 1006..1171 +
1681462908.2121227-CDS-Ecto-sp13_S_contig17405:1491..15451681462908.2121227-CDS-Ecto-sp13_S_contig17405:1491..1545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17405 1492..1545 +
1681462908.2212539-CDS-Ecto-sp13_S_contig17405:1823..19681681462908.2212539-CDS-Ecto-sp13_S_contig17405:1823..1968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17405 1824..1968 +
1681462908.2309616-CDS-Ecto-sp13_S_contig17405:2405..27591681462908.2309616-CDS-Ecto-sp13_S_contig17405:2405..2759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17405 2406..2759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17405.5210.1

>prot_Ecto-sp13_S_contig17405.5210.1 ID=prot_Ecto-sp13_S_contig17405.5210.1|Name=mRNA_Ecto-sp13_S_contig17405.5210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp
KRDSALPGRDCGDPTTREVGFFLRQFKQTGKVPEALRSLIVFQPKSWARI
RKVLLAPPAERIALPDDSGRILPPDSAVVKEAIGSGEGGLRVEVSLKYRR
LLVQKLAKSSLITAQEHESFRNSYVEYLQSQRHQDEAESSGLEAAATGVV
GQLVLLESKLNDRGSVKIDDGNDGSSAVEERLALLLQEFLPRALVVEVCM
EDEGEAGGHNPDSRPDRAWFSRATQLLRQILDQWKRQRFPAASQEGDSPG
LGASPEAVAEAILNSVHCCVAAVGASLVIPTSGKPGSAERQQHLNRNVGA
EGIVR
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mRNA from alignment at Ecto-sp13_S_contig17405:143..2759+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17405.5210.1 ID=mRNA_Ecto-sp13_S_contig17405.5210.1|Name=mRNA_Ecto-sp13_S_contig17405.5210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17405:143..2759+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAGGGATTCGGCCCTTCCGGGGAGAGACTGCGGGGATCCCACCACACG
AGAGGCGAGAACATCCTTGCCTTTGCCAATCGATTACGTGTCTACTTTGG
GGTGAATGTTCTTCATGCTCAGAAGAAGCTCAGCAGGCGCGTCGTCGATT
TTTGATGTTGCCGGGAGAGCCAAATAAGACCTTGTGCAGGAAAGTCGGCC
GTAAGTTTTAGCCGTTCCAAGACCTCTTCATCGGGCATGAACTAGAGACT
AGCTGGAGATGAGGGTACAACGTTATTTCGTCGAGATGTCAGCAAGGATA
CTTGAGGGCGGGTAGGCATTTCCCCGCGTCTTGCTCGAAATGTGCTCCCG
CAAGCACTGTCCTAGACCGACGTCTATAGACGCCATGAGGTAACAAAACG
CGCTGTAGATCTAGAGATGCTTGACGGGCAAAGGGTCTTCATACATGTGG
CTCCGGGCCGCCGCTGACCGCCGCCGCCGCTCCCGTCATACACGTGTTTT
CAGGTCGGCTTTTTCCTGCGGCAATTCAAGCAAACCGGGAAAGTACCGGA
GGCGTTGAGATCCCTCATAGTTTTCCAGCCGAAATCCTGGGCCAGAATAC
GCAAGGTCTTGCTTGCCCCGCCGGCAGAGCGCATCGCTTTGCCAGGTCAG
TGAGGACGTATGGGTGCAGGAAAAGAGAGAAAAACGAAGGGATACTGCCA
AAGCCATTAGAACTTATCGACTCGTTTGGCACCGTAACCACTCTCTCGGC
CATGTGTGTGTGTTGATTATTTGTGGTGCCATCTGTACCGGTAGGTCTAC
CAGCGAGATATTTGCTGCCCTTAGGCTGAACCGGCTTTCGCTACGTACAT
TTATTTCCGGCAGATGACAGCGGCAGGATCCTGCCTCCGGACAGCGCCGT
GGTGAAGGAGGCCATAGGGAGCGGGGAGGGTGGCCTTCGCGTCGAGGTCT
CTCTGAAGTACCGCCGGTTGCTCGTGCAGAAGCTGGCAAAGAGTTCGCTC
ATCACTGCCCAAGAGCACGAATCCTTCAGGTCAACCTCGTTCTGCAACTC
GATCTGCCGCATAGGGTTACATTTAGTATCTTAATGCAGGGACCACAAGA
AACGAATATGGTCCGGTCGTATGAATTGGGCGTGGCAATTGTGAACCTCG
AATGAGCCACAGAGGTACCTCCCAAGAGCCTGACTTATTAAGAGTGCGAA
GGTGAGGCGCATCAATGGTTATTCGCTATATGAGCGGGCGCTGCTGTATT
GGGAAGACCAGCAGAACGACAATTGGAATTACCCTCCTGGGAAGTTTTTA
GACTGAAGTGCTCTTGATCGTTTTCCCTTGTTTCACGATCATCTTGCAGA
AACTCGTACGTTGAGTACCTGCAAAGCCAGCGACATCAAGATGAAGCGGA
GAGGTGGGTCCGCTTGACTGTCCGCTCTACGGACGACCTACGTCATTTTC
GTCTGCCCTGTAGCAGCCACAAGCGGTAGCGCTGTGCATCACCGGGCAGC
CGTCGAAGGCCCACGTGTCTTTGAGTGCTTTCTAGCAGCGTCTCCGGGTG
GTGGTGTCGCGTTGCTTCACATCCGTTTCAGTCTCCATGTGAAATCCTCA
AATATTTCCCATCGAACTCATCCGTTGGGTTGCGCCATTGCTGTTTCTGC
CAATCCATGTGTCGAATTCCATCATGAAAAGCTCCGGATTGGAAGCGGCC
GCTACCGGGGTCGTTGGGCAGCTAGTGCTGCTTGAGTCGAAGCTCAACGA
TCGTGGTTCGGTAAAGATCGATGACGGGAACGATGGATCCAGTGCGGTTG
AGGAGCGTCTAGCTTTGTTGCTTCAGGTGCGTTGTGTTTACCGCGAACCA
CTCCCCCCGTCCGGAAGTGTGAGACATGTGTGGTCCCGCTTAAGATTTTG
CCTGGATTGCCTGAATAGCGGGGGAGACGGTACGCCAAGGTGATCTCTTG
TACAGCATGTTCTTTTGACGTTTCTGCGCAAACCCGTGCGGTACGAAAGA
CCCAGGTGCGAATATGCTCAGTTCGAGCGATACATATGCTTGCTTTTTCA
AGTGAATATCTTGAAGACACTACTTTGTGGCCACCTGTGTTGGCCAGCGC
CTCTGTCCTTGGGCGAGCTCACTTTCTCCGTAGTACTCTCTCGTGCTCTC
AAGCGTTATGGCCTAGTCTTTCTTGACAGCACGGCCACCAGCGAGAACAC
CGAAACCCGCCCTTCATGTTTCCCCCCTTGCCCCACGACCCCTCTCGTGG
TACGCCTCGGCAGGAGTTTCTTCCTCGCGCGTTGGTCGTAGAGGTGTGTA
TGGAAGACGAAGGCGAAGCGGGAGGGCACAACCCTGATTCGAGACCTGAC
CGCGCTTGGTTTTCGAGAGCGACGCAACTCCTCCGGCAGATTCTCGACCA
ATGGAAACGACAACGTTTCCCAGCTGCCAGCCAGGAGGGCGATTCGCCGG
GTCTCGGCGCGTCACCGGAGGCGGTGGCAGAGGCAATCCTGAACAGCGTC
CATTGTTGCGTTGCCGCCGTTGGCGCATCGCTGGTAATCCCCACGAGCGG
CAAGCCAGGCTCAGCTGAGCGACAGCAACATCTAAACAGAAACGTTGGGG
CCGAAGGTATTGTCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17405:143..2759+

>mRNA_Ecto-sp13_S_contig17405.5210.1 ID=mRNA_Ecto-sp13_S_contig17405.5210.1|Name=mRNA_Ecto-sp13_S_contig17405.5210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17405:143..2759+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAGGGATTCGGCCCTTCCGGGGAGAGACTGCGGGGATCCCACCACACG
AGAGGTCGGCTTTTTCCTGCGGCAATTCAAGCAAACCGGGAAAGTACCGG
AGGCGTTGAGATCCCTCATAGTTTTCCAGCCGAAATCCTGGGCCAGAATA
CGCAAGGTCTTGCTTGCCCCGCCGGCAGAGCGCATCGCTTTGCCAGATGA
CAGCGGCAGGATCCTGCCTCCGGACAGCGCCGTGGTGAAGGAGGCCATAG
GGAGCGGGGAGGGTGGCCTTCGCGTCGAGGTCTCTCTGAAGTACCGCCGG
TTGCTCGTGCAGAAGCTGGCAAAGAGTTCGCTCATCACTGCCCAAGAGCA
CGAATCCTTCAGAAACTCGTACGTTGAGTACCTGCAAAGCCAGCGACATC
AAGATGAAGCGGAGAGCTCCGGATTGGAAGCGGCCGCTACCGGGGTCGTT
GGGCAGCTAGTGCTGCTTGAGTCGAAGCTCAACGATCGTGGTTCGGTAAA
GATCGATGACGGGAACGATGGATCCAGTGCGGTTGAGGAGCGTCTAGCTT
TGTTGCTTCAGGAGTTTCTTCCTCGCGCGTTGGTCGTAGAGGTGTGTATG
GAAGACGAAGGCGAAGCGGGAGGGCACAACCCTGATTCGAGACCTGACCG
CGCTTGGTTTTCGAGAGCGACGCAACTCCTCCGGCAGATTCTCGACCAAT
GGAAACGACAACGTTTCCCAGCTGCCAGCCAGGAGGGCGATTCGCCGGGT
CTCGGCGCGTCACCGGAGGCGGTGGCAGAGGCAATCCTGAACAGCGTCCA
TTGTTGCGTTGCCGCCGTTGGCGCATCGCTGGTAATCCCCACGAGCGGCA
AGCCAGGCTCAGCTGAGCGACAGCAACATCTAAACAGAAACGTTGGGGCC
GAAGGTATTGTCCGG
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